Wall clock time and date at job start Sun Mar 29 2020 22:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47190 * 2 1 4 4 C 1.50705 * 109.47295 * 239.99444 * 2 1 3 5 5 H 1.07997 * 119.99869 * 241.35866 * 4 2 1 6 6 C 1.37879 * 119.99443 * 61.36666 * 4 2 1 7 7 N 1.31514 * 119.99479 * 193.96091 * 6 4 2 8 8 Si 1.86798 * 120.00351 * 13.95462 * 6 4 2 9 9 H 1.48500 * 109.46757 * 84.56253 * 8 6 4 10 10 H 1.48500 * 109.47263 * 204.55848 * 8 6 4 11 11 H 1.48500 * 109.47369 * 324.56067 * 8 6 4 12 12 C 1.53000 * 109.47172 * 119.99729 * 2 1 3 13 13 N 1.46902 * 109.47095 * 300.00184 * 12 2 1 14 14 C 1.46901 * 110.99868 * 179.97438 * 13 12 2 15 15 H 1.09001 * 112.90858 * 336.25073 * 14 13 12 16 16 C 1.53781 * 113.61282 * 107.50543 * 14 13 12 17 17 C 1.53782 * 87.08212 * 139.98028 * 16 14 13 18 18 C 1.53776 * 87.08043 * 334.56632 * 17 16 14 19 19 H 1.09001 * 113.61627 * 270.88301 * 18 17 16 20 20 C 1.52998 * 113.61854 * 140.06623 * 18 17 16 21 21 C 1.52997 * 117.50540 * 149.60901 * 20 18 17 22 22 C 1.53006 * 117.49882 * 80.94450 * 20 18 17 23 23 H 1.08997 * 109.47125 * 309.31682 * 1 2 3 24 24 H 1.08999 * 109.46979 * 69.32147 * 1 2 3 25 25 H 1.09003 * 109.47213 * 189.31768 * 1 2 3 26 26 H 1.08994 * 109.47120 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.46758 * 299.99731 * 3 2 1 28 28 H 1.08997 * 109.47164 * 59.99266 * 3 2 1 29 29 H 0.96996 * 119.99765 * 179.97438 * 7 6 4 30 30 H 1.08994 * 109.47322 * 180.02562 * 12 2 1 31 31 H 1.09004 * 109.46906 * 59.99923 * 12 2 1 32 32 H 1.00896 * 110.99974 * 303.95513 * 13 12 2 33 33 H 1.09001 * 113.61403 * 25.42872 * 16 14 13 34 34 H 1.08999 * 113.61643 * 254.52953 * 16 14 13 35 35 H 1.09000 * 113.61460 * 220.01909 * 17 16 14 36 36 H 1.08995 * 113.68955 * 89.12623 * 17 16 14 37 37 H 1.09001 * 115.54592 * 295.28825 * 20 18 17 38 38 H 1.09002 * 117.49464 * 359.97438 * 21 20 18 39 39 H 1.08998 * 117.50023 * 145.02532 * 21 20 18 40 40 H 1.09001 * 117.50147 * 214.98409 * 22 20 18 41 41 H 1.09003 * 117.49549 * 0.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6351 -1.6012 -1.1314 6 6 1.7227 -0.2233 -2.4825 7 7 1.9164 -0.9724 -3.5459 8 14 1.0278 1.5007 -2.6684 9 1 2.1419 2.4817 -2.7082 10 1 0.2474 1.5866 -3.9288 11 1 0.1418 1.8042 -1.5159 12 6 2.0400 -0.7212 1.2493 13 7 1.5503 -0.0286 2.4487 14 6 2.0208 -0.6951 3.6703 15 1 2.2677 -1.7450 3.5127 16 6 3.1122 0.0888 4.4183 17 6 2.4082 -0.3274 5.7207 18 6 1.1189 -0.4510 4.8917 19 1 0.5465 0.4749 4.8338 20 6 0.2590 -1.6580 5.2720 21 6 -1.2552 -1.5311 5.0934 22 6 -0.6464 -1.5223 6.4979 23 1 -0.3633 0.6511 0.7950 24 1 -0.3633 0.3629 -0.9615 25 1 -0.3634 -1.0141 0.1664 26 1 3.1299 1.4425 0.0005 27 1 1.6767 1.9562 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.6982 -0.6298 -4.4268 30 1 3.1299 -0.7208 1.2495 31 1 1.6766 -1.7489 1.2493 32 1 1.8197 0.9436 2.4401 33 1 3.0849 1.1622 4.2309 34 1 4.1096 -0.3362 4.3061 35 1 2.3717 0.4640 6.4694 36 1 2.7601 -1.2765 6.1247 37 1 0.7081 -2.6331 5.0835 38 1 -1.6389 -0.5875 4.7055 39 1 -1.8024 -2.4229 4.7879 40 1 -0.7933 -2.4083 7.1156 41 1 -0.6297 -0.5729 7.0333 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459732137.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:14 Heat of formation + Delta-G solvation = 32.710669 kcal Electronic energy + Delta-G solvation = -17503.473989 eV Core-core repulsion = 14998.241656 eV Total energy + Delta-G solvation = -2505.232333 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.56162 -38.51946 -36.89615 -34.42827 -32.77638 -27.96552 -27.13508 -27.00985 -26.63102 -24.13657 -23.01327 -21.66187 -20.96509 -20.10284 -18.09654 -17.51567 -16.76779 -16.32035 -15.79405 -15.22395 -15.14029 -14.77577 -14.38706 -14.12609 -13.92124 -13.74399 -13.66049 -13.31332 -12.79546 -12.61780 -12.35594 -12.30769 -12.20006 -11.88749 -11.82206 -11.61855 -11.58413 -11.32346 -10.93609 -10.80021 -10.56483 -10.55118 -10.24475 -9.05574 -8.28835 -6.27804 1.35307 1.38983 1.49839 2.36297 2.96599 3.08169 3.37335 3.76757 3.85419 3.93719 4.07727 4.22633 4.24040 4.28890 4.41520 4.44442 4.56124 4.67520 4.72757 4.84519 4.86715 4.91176 4.93958 4.99244 5.04528 5.12135 5.12634 5.14753 5.16628 5.29550 5.32003 5.34991 5.42849 5.59195 5.64816 5.78580 5.88622 6.30963 6.37074 6.66280 6.80302 7.37474 8.88603 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.035703 B = 0.005804 C = 0.005521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.061640 B = 4822.931008 C = 5070.217062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.034 3.966 3 C -0.146 4.146 4 C -0.513 4.513 5 H 0.027 0.973 6 C 0.015 3.985 7 N -0.949 5.949 8 Si 0.943 3.057 9 H -0.282 1.282 10 H -0.316 1.316 11 H -0.213 1.213 12 C 0.101 3.899 13 N -0.674 5.674 14 C 0.065 3.935 15 H 0.080 0.920 16 C -0.168 4.168 17 C -0.119 4.119 18 C -0.061 4.061 19 H 0.088 0.912 20 C -0.145 4.145 21 C -0.187 4.187 22 C -0.166 4.166 23 H 0.058 0.942 24 H 0.030 0.970 25 H 0.031 0.969 26 H 0.045 0.955 27 H 0.029 0.971 28 H 0.070 0.930 29 H 0.263 0.737 30 H 0.011 0.989 31 H 0.045 0.955 32 H 0.342 0.658 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.474 3.973 20.828 21.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.033 3.967 3 C -0.203 4.203 4 C -0.551 4.551 5 H 0.045 0.955 6 C -0.181 4.181 7 N -0.589 5.589 8 Si 0.773 3.227 9 H -0.209 1.209 10 H -0.246 1.246 11 H -0.137 1.137 12 C -0.028 4.028 13 N -0.305 5.305 14 C -0.045 4.045 15 H 0.098 0.902 16 C -0.207 4.207 17 C -0.157 4.157 18 C -0.080 4.080 19 H 0.106 0.894 20 C -0.164 4.164 21 C -0.224 4.224 22 C -0.203 4.203 23 H 0.077 0.923 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.064 0.936 27 H 0.047 0.953 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.029 0.971 31 H 0.063 0.937 32 H 0.163 0.837 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.112 0.888 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.118 0.882 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.092 3.624 20.647 21.189 hybrid contribution 0.942 0.389 -1.129 1.521 sum -2.150 4.014 19.518 20.042 Atomic orbital electron populations 1.21967 0.96696 0.99816 0.99267 1.18485 0.93373 0.92547 0.92286 1.22273 1.00430 0.97680 0.99905 1.21224 1.32211 1.10784 0.90918 0.95491 1.25826 0.95520 1.01370 0.95424 1.70117 1.51323 1.38195 0.99306 0.86346 0.79325 0.80454 0.76528 1.20945 1.24560 1.13669 1.21597 0.95174 0.96823 0.89207 1.60446 1.63134 1.06176 1.00777 1.23201 0.94718 0.97831 0.88789 0.90153 1.23605 0.98569 1.00668 0.97898 1.22692 0.95125 1.02087 0.95789 1.22235 0.94517 0.96823 0.94474 0.89409 1.22199 0.92069 0.98985 1.03104 1.22944 0.95956 1.02950 1.00560 1.22964 1.03342 1.03589 0.90406 0.92297 0.95103 0.95000 0.93619 0.95263 0.91114 0.92865 0.97085 0.93657 0.83714 0.89594 0.91779 0.90186 0.89678 0.88759 0.89316 0.89302 0.88157 0.88265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.16 7.55 71.98 0.54 -4.62 16 2 C 0.03 1.53 0.57 -52.93 -0.03 1.50 16 3 C -0.15 -5.84 7.37 71.98 0.53 -5.31 16 4 C -0.51 -29.20 8.62 25.60 0.22 -28.98 16 5 H 0.03 1.71 7.99 -2.91 -0.02 1.69 16 6 C 0.02 0.90 5.32 84.66 0.45 1.35 16 7 N -0.95 -60.44 13.96 21.45 0.30 -60.14 16 8 Si 0.94 45.32 22.79 68.60 1.56 46.88 16 9 H -0.28 -13.16 7.10 99.48 0.71 -12.45 16 10 H -0.32 -15.53 7.11 99.48 0.71 -14.83 16 11 H -0.21 -9.06 4.65 99.48 0.46 -8.59 16 12 C 0.10 3.97 4.42 86.30 0.38 4.35 16 13 N -0.67 -20.79 6.01 -488.84 -2.94 -23.73 16 14 C 0.07 1.67 3.74 45.44 0.17 1.84 16 15 H 0.08 2.25 7.82 -2.39 -0.02 2.24 16 16 C -0.17 -3.53 7.70 31.12 0.24 -3.29 16 17 C -0.12 -2.11 7.64 31.12 0.24 -1.87 16 18 C -0.06 -1.31 3.61 -10.27 -0.04 -1.34 16 19 H 0.09 1.95 8.12 -2.39 -0.02 1.93 16 20 C -0.15 -3.06 5.42 -10.79 -0.06 -3.12 16 21 C -0.19 -3.96 10.24 30.62 0.31 -3.65 16 22 C -0.17 -2.87 10.26 30.62 0.31 -2.55 16 23 H 0.06 2.21 7.88 -2.39 -0.02 2.19 16 24 H 0.03 1.38 4.30 -2.39 -0.01 1.37 16 25 H 0.03 1.38 8.12 -2.39 -0.02 1.36 16 26 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.03 1.23 2.25 -2.39 -0.01 1.23 16 28 H 0.07 2.30 6.57 -2.39 -0.02 2.28 16 29 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 30 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.04 1.91 8.13 -2.38 -0.02 1.89 16 32 H 0.34 9.78 6.24 -89.70 -0.56 9.22 16 33 H 0.09 1.71 7.82 -2.39 -0.02 1.69 16 34 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.08 1.42 8.10 -2.39 -0.02 1.40 16 37 H 0.09 2.07 8.13 -2.39 -0.02 2.05 16 38 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -63.86 308.98 2.38 -61.48 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 0.18 Total: 21.19 kcal Atomic # 6 Polarization: -48.95 SS G_CDS: 3.28 Total: -45.68 kcal Atomic # 7 Polarization: -81.22 SS G_CDS: -2.64 Total: -83.86 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.56 Total: 46.88 kcal Total: -63.86 2.38 -61.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459732137.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.187 kcal (2) G-P(sol) polarization free energy of solvation -63.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds