Wall clock time and date at job start Sun Mar 29 2020 22:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46880 * 2 1 4 4 C 1.50702 * 109.47339 * 120.00104 * 2 1 3 5 5 H 1.07997 * 119.99850 * 120.27558 * 4 2 1 6 6 C 1.37879 * 120.00115 * 299.99792 * 4 2 1 7 7 N 1.31519 * 119.99728 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99910 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47133 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46691 * 120.00204 * 8 6 4 11 11 H 1.48496 * 109.46871 * 240.00122 * 8 6 4 12 12 C 1.52996 * 109.46774 * 240.00292 * 2 1 3 13 13 N 1.46903 * 109.47459 * 59.99809 * 12 2 1 14 14 C 1.46895 * 110.99915 * 179.97438 * 13 12 2 15 15 H 1.08999 * 112.85651 * 313.38283 * 14 13 12 16 16 C 1.53778 * 113.61362 * 84.58249 * 14 13 12 17 17 C 1.53774 * 87.08647 * 139.97593 * 16 14 13 18 18 C 1.53780 * 87.07848 * 334.56784 * 17 16 14 19 19 H 1.09001 * 113.61726 * 139.98216 * 18 17 16 20 20 C 1.53001 * 113.61247 * 270.88117 * 18 17 16 21 21 C 1.53001 * 117.50024 * 340.04898 * 20 18 17 22 22 C 1.53004 * 117.49904 * 271.38862 * 20 18 17 23 23 H 1.09000 * 109.46801 * 299.99705 * 1 2 3 24 24 H 1.08990 * 109.47245 * 59.99487 * 1 2 3 25 25 H 1.08999 * 109.46865 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46771 * 180.02562 * 3 2 1 27 27 H 1.08995 * 109.47440 * 299.99866 * 3 2 1 28 28 H 1.09000 * 109.47162 * 60.00516 * 3 2 1 29 29 H 0.96994 * 119.99835 * 179.97438 * 7 6 4 30 30 H 1.09005 * 109.47157 * 179.97438 * 12 2 1 31 31 H 1.09000 * 109.47436 * 299.99439 * 12 2 1 32 32 H 1.00902 * 110.99422 * 56.04790 * 13 12 2 33 33 H 1.09006 * 113.61124 * 254.52510 * 16 14 13 34 34 H 1.09006 * 113.61622 * 25.42624 * 16 14 13 35 35 H 1.09010 * 113.61454 * 89.11013 * 17 16 14 36 36 H 1.08993 * 113.61911 * 220.01746 * 17 16 14 37 37 H 1.09000 * 115.55005 * 125.72300 * 20 18 17 38 38 H 1.08996 * 117.49813 * 359.97438 * 21 20 18 39 39 H 1.08997 * 117.49906 * 145.01970 * 21 20 18 40 40 H 1.09004 * 117.49830 * 214.98013 * 22 20 18 41 41 H 1.08999 * 117.49940 * 359.97258 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6570 -1.5859 1.1313 6 6 1.6994 -0.2394 2.4828 7 7 0.9429 0.8296 2.6034 8 14 2.3216 -1.1204 4.0079 9 1 3.1466 -2.2870 3.6037 10 1 3.1469 -0.1874 4.8164 11 1 1.1663 -1.5868 4.8160 12 6 2.0400 -0.7212 -1.2493 13 7 1.5502 -0.0287 -2.4487 14 6 2.0217 -0.6945 -3.6703 15 1 3.0848 -0.9330 -3.6391 16 6 1.1383 -1.8742 -4.1090 17 6 1.3421 -1.3879 -5.5535 18 6 1.5847 0.0118 -4.9646 19 1 2.3890 0.5591 -5.4563 20 6 0.3083 0.8410 -4.8093 21 6 -0.9077 0.4285 -5.6413 22 6 -0.1281 1.6958 -6.0009 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8898 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 0.7083 1.1608 3.4844 30 1 3.1300 -0.7208 -1.2496 31 1 1.6767 -1.7489 -1.2493 32 1 1.8198 0.9436 -2.4401 33 1 1.5822 -2.8497 -3.9100 34 1 0.1068 -1.7992 -3.7645 35 1 2.2197 -1.8156 -6.0385 36 1 0.4439 -1.4537 -6.1673 37 1 0.1239 1.2378 -3.8110 38 1 -0.7982 -0.4334 -6.2995 39 1 -1.8920 0.5542 -5.1904 40 1 -0.6000 2.6547 -5.7865 41 1 0.4944 1.6678 -6.8953 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459732139.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:19 Heat of formation + Delta-G solvation = 39.626157 kcal Electronic energy + Delta-G solvation = -17638.241802 eV Core-core repulsion = 15133.309347 eV Total energy + Delta-G solvation = -2504.932455 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.72377 -36.55052 -35.28999 -32.60077 -30.26918 -26.18522 -25.49360 -25.17257 -24.67025 -22.87085 -22.09595 -21.37487 -18.37490 -17.88912 -16.39096 -15.65579 -15.50223 -14.78791 -14.62365 -14.25612 -13.40070 -13.09253 -12.86631 -12.31746 -12.02910 -11.61216 -11.48128 -11.44243 -11.10833 -11.05070 -10.74635 -10.67890 -10.54437 -10.40958 -10.34865 -10.12993 -10.01684 -9.88037 -9.44356 -9.33953 -8.95756 -8.57287 -8.26402 -7.63540 -5.88484 -3.98492 3.31894 3.40201 3.43927 3.94789 4.46190 4.64266 4.76023 4.85068 5.02471 5.14769 5.21540 5.32540 5.37035 5.41010 5.64780 5.79087 5.82454 5.83899 6.10422 6.11855 6.19413 6.26410 6.38033 6.43500 6.55871 6.58901 6.69176 6.77544 6.94690 7.12405 7.21852 7.42592 7.52642 7.79180 7.81928 7.90081 8.05651 8.25721 8.38872 8.60010 9.03402 9.66404 11.12042 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.041692 B = 0.005580 C = 0.005267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.434626 B = 5016.946086 C = 5314.512017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.068 3.932 3 C -0.132 4.132 4 C -0.504 4.504 5 H 0.051 0.949 6 C 0.064 3.936 7 N -0.885 5.885 8 Si 0.887 3.113 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.285 1.285 12 C 0.076 3.924 13 N -0.670 5.670 14 C 0.063 3.937 15 H 0.054 0.946 16 C -0.121 4.121 17 C -0.146 4.146 18 C -0.075 4.075 19 H 0.069 0.931 20 C -0.115 4.115 21 C -0.183 4.183 22 C -0.190 4.190 23 H 0.073 0.927 24 H 0.020 0.980 25 H 0.017 0.983 26 H 0.018 0.982 27 H 0.011 0.989 28 H 0.082 0.918 29 H 0.257 0.743 30 H 0.010 0.990 31 H 0.055 0.945 32 H 0.336 0.664 33 H 0.056 0.944 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.123 0.877 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.508 -0.528 -14.717 14.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.068 3.932 3 C -0.190 4.190 4 C -0.543 4.543 5 H 0.070 0.930 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.716 3.284 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.211 1.211 12 C -0.052 4.052 13 N -0.302 5.302 14 C -0.047 4.047 15 H 0.071 0.929 16 C -0.159 4.159 17 C -0.183 4.183 18 C -0.094 4.094 19 H 0.088 0.912 20 C -0.133 4.133 21 C -0.220 4.220 22 C -0.227 4.227 23 H 0.091 0.909 24 H 0.039 0.961 25 H 0.036 0.964 26 H 0.037 0.963 27 H 0.029 0.971 28 H 0.101 0.899 29 H 0.067 0.933 30 H 0.028 0.972 31 H 0.074 0.926 32 H 0.155 0.845 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.141 0.859 38 H 0.113 0.887 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.184 -0.740 -14.559 14.626 hybrid contribution 1.381 -0.269 0.911 1.676 sum 0.197 -1.009 -13.648 13.687 Atomic orbital electron populations 1.21617 0.97413 0.98498 0.99963 1.18097 0.93180 0.91901 0.90071 1.21831 0.97650 0.99259 1.00230 1.21163 1.30720 1.11889 0.90532 0.93036 1.24888 0.95095 0.94971 0.98672 1.69848 1.36964 1.22890 1.22730 0.86616 0.78600 0.79730 0.83489 1.19981 1.21203 1.21120 1.22118 0.95229 0.97897 0.89945 1.60794 1.62612 1.05993 1.00847 1.22916 0.95967 0.95851 0.89994 0.92855 1.22892 1.01367 0.97049 0.94586 1.22998 1.01509 0.96575 0.97242 1.21955 0.96149 0.94545 0.96711 0.91239 1.21966 0.93753 1.00888 0.96722 1.23051 0.96476 0.98348 1.04117 1.22982 1.04560 0.95289 0.99863 0.90867 0.96145 0.96389 0.96312 0.97058 0.89888 0.93302 0.97202 0.92650 0.84456 0.92563 0.89177 0.90841 0.90904 0.85890 0.88748 0.89178 0.89250 0.89486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.87 8.09 37.16 0.30 -2.57 16 2 C 0.07 1.65 0.57 -155.66 -0.09 1.56 16 3 C -0.13 -3.13 7.92 37.16 0.29 -2.84 16 4 C -0.50 -13.71 8.01 -34.44 -0.28 -13.98 16 5 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 6 C 0.06 1.76 5.15 -17.82 -0.09 1.67 16 7 N -0.89 -24.70 9.35 55.43 0.52 -24.18 16 8 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 C 0.08 1.61 4.55 -3.82 -0.02 1.60 16 13 N -0.67 -11.86 4.35 -105.87 -0.46 -12.32 16 14 C 0.06 0.95 3.78 -66.91 -0.25 0.70 16 15 H 0.05 0.82 8.12 -51.93 -0.42 0.40 16 16 C -0.12 -1.69 7.58 -25.92 -0.20 -1.88 16 17 C -0.15 -1.69 7.42 -25.92 -0.19 -1.88 16 18 C -0.07 -0.95 4.20 -89.81 -0.38 -1.33 16 19 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 20 C -0.12 -1.49 5.32 -90.62 -0.48 -1.97 16 21 C -0.18 -2.11 9.76 -26.69 -0.26 -2.37 16 22 C -0.19 -2.10 10.26 -26.69 -0.27 -2.38 16 23 H 0.07 1.97 6.07 -51.93 -0.32 1.65 16 24 H 0.02 0.45 7.60 -51.93 -0.39 0.06 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.01 0.23 6.57 -51.93 -0.34 -0.11 16 28 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 29 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.34 5.94 6.50 -39.29 -0.26 5.69 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 36 H 0.07 0.79 5.45 -51.93 -0.28 0.50 16 37 H 0.12 1.85 6.85 -51.93 -0.36 1.49 16 38 H 0.09 1.01 5.74 -51.93 -0.30 0.71 16 39 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 311.76 15.07 4.70 4.70 Total: -1.00 -26.82 311.76 -9.35 -36.17 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -7.17 Total: 5.04 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: -1.91 Total: -25.67 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.06 Total: -36.50 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -26.82 -9.35 -36.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459732139.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.799 kcal (2) G-P(sol) polarization free energy of solvation -26.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds