Wall clock time and date at job start Sun Mar 29 2020 22:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46880 * 2 1 4 4 C 1.50702 * 109.47339 * 120.00104 * 2 1 3 5 5 H 1.07997 * 119.99850 * 120.27558 * 4 2 1 6 6 C 1.37879 * 120.00115 * 299.99792 * 4 2 1 7 7 N 1.31519 * 119.99728 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99910 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47133 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46691 * 120.00204 * 8 6 4 11 11 H 1.48496 * 109.46871 * 240.00122 * 8 6 4 12 12 C 1.52996 * 109.46774 * 240.00292 * 2 1 3 13 13 N 1.46903 * 109.47459 * 59.99809 * 12 2 1 14 14 C 1.46895 * 110.99915 * 179.97438 * 13 12 2 15 15 H 1.08999 * 112.85651 * 313.38283 * 14 13 12 16 16 C 1.53778 * 113.61362 * 84.58249 * 14 13 12 17 17 C 1.53774 * 87.08647 * 139.97593 * 16 14 13 18 18 C 1.53780 * 87.07848 * 334.56784 * 17 16 14 19 19 H 1.09001 * 113.61726 * 139.98216 * 18 17 16 20 20 C 1.53001 * 113.61247 * 270.88117 * 18 17 16 21 21 C 1.53001 * 117.50024 * 340.04898 * 20 18 17 22 22 C 1.53004 * 117.49904 * 271.38862 * 20 18 17 23 23 H 1.09000 * 109.46801 * 299.99705 * 1 2 3 24 24 H 1.08990 * 109.47245 * 59.99487 * 1 2 3 25 25 H 1.08999 * 109.46865 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46771 * 180.02562 * 3 2 1 27 27 H 1.08995 * 109.47440 * 299.99866 * 3 2 1 28 28 H 1.09000 * 109.47162 * 60.00516 * 3 2 1 29 29 H 0.96994 * 119.99835 * 179.97438 * 7 6 4 30 30 H 1.09005 * 109.47157 * 179.97438 * 12 2 1 31 31 H 1.09000 * 109.47436 * 299.99439 * 12 2 1 32 32 H 1.00902 * 110.99422 * 56.04790 * 13 12 2 33 33 H 1.09006 * 113.61124 * 254.52510 * 16 14 13 34 34 H 1.09006 * 113.61622 * 25.42624 * 16 14 13 35 35 H 1.09010 * 113.61454 * 89.11013 * 17 16 14 36 36 H 1.08993 * 113.61911 * 220.01746 * 17 16 14 37 37 H 1.09000 * 115.55005 * 125.72300 * 20 18 17 38 38 H 1.08996 * 117.49813 * 359.97438 * 21 20 18 39 39 H 1.08997 * 117.49906 * 145.01970 * 21 20 18 40 40 H 1.09004 * 117.49830 * 214.98013 * 22 20 18 41 41 H 1.08999 * 117.49940 * 359.97258 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6570 -1.5859 1.1313 6 6 1.6994 -0.2394 2.4828 7 7 0.9429 0.8296 2.6034 8 14 2.3216 -1.1204 4.0079 9 1 3.1466 -2.2870 3.6037 10 1 3.1469 -0.1874 4.8164 11 1 1.1663 -1.5868 4.8160 12 6 2.0400 -0.7212 -1.2493 13 7 1.5502 -0.0287 -2.4487 14 6 2.0217 -0.6945 -3.6703 15 1 3.0848 -0.9330 -3.6391 16 6 1.1383 -1.8742 -4.1090 17 6 1.3421 -1.3879 -5.5535 18 6 1.5847 0.0118 -4.9646 19 1 2.3890 0.5591 -5.4563 20 6 0.3083 0.8410 -4.8093 21 6 -0.9077 0.4285 -5.6413 22 6 -0.1281 1.6958 -6.0009 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8898 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 0.7083 1.1608 3.4844 30 1 3.1300 -0.7208 -1.2496 31 1 1.6767 -1.7489 -1.2493 32 1 1.8198 0.9436 -2.4401 33 1 1.5822 -2.8497 -3.9100 34 1 0.1068 -1.7992 -3.7645 35 1 2.2197 -1.8156 -6.0385 36 1 0.4439 -1.4537 -6.1673 37 1 0.1239 1.2378 -3.8110 38 1 -0.7982 -0.4334 -6.2995 39 1 -1.8920 0.5542 -5.1904 40 1 -0.6000 2.6547 -5.7865 41 1 0.4944 1.6678 -6.8953 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459732139.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:18 Heat of formation + Delta-G solvation = 27.000556 kcal Electronic energy + Delta-G solvation = -17638.789289 eV Core-core repulsion = 15133.309347 eV Total energy + Delta-G solvation = -2505.479942 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.80864 -38.24308 -36.45062 -34.34723 -32.06658 -27.55774 -27.33682 -27.10639 -26.09931 -24.19132 -23.01194 -22.45252 -20.28892 -18.94976 -17.97510 -17.31411 -16.72598 -16.40966 -15.85912 -15.70326 -14.92436 -14.67129 -14.28495 -13.88715 -13.73172 -13.17603 -13.02984 -12.76143 -12.53855 -12.50613 -12.44607 -12.27389 -12.09894 -12.07932 -11.70701 -11.58381 -11.40590 -11.26722 -11.01440 -10.64772 -10.59821 -10.39167 -10.34462 -9.10827 -7.96724 -6.13514 1.40418 1.43578 1.53149 2.46328 3.03346 3.25195 3.49704 3.61587 3.83577 3.98362 4.06060 4.28613 4.31375 4.39836 4.59303 4.60591 4.72194 4.79071 4.86334 4.89647 4.95947 5.04783 5.07329 5.15581 5.18643 5.24302 5.29886 5.38784 5.44214 5.48512 5.52214 5.58074 5.61622 5.70503 5.78108 6.20344 6.31240 6.39261 6.52597 6.70090 6.96550 7.54062 9.01583 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.041692 B = 0.005580 C = 0.005267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.434626 B = 5016.946086 C = 5314.512017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.059 3.941 3 C -0.120 4.120 4 C -0.525 4.525 5 H 0.042 0.958 6 C 0.022 3.978 7 N -0.904 5.904 8 Si 0.944 3.056 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.283 1.283 12 C 0.093 3.907 13 N -0.667 5.667 14 C 0.051 3.949 15 H 0.053 0.947 16 C -0.124 4.124 17 C -0.129 4.129 18 C -0.065 4.065 19 H 0.080 0.920 20 C -0.134 4.134 21 C -0.181 4.181 22 C -0.176 4.176 23 H 0.047 0.953 24 H 0.034 0.966 25 H 0.008 0.992 26 H 0.015 0.985 27 H 0.034 0.966 28 H 0.055 0.945 29 H 0.257 0.743 30 H 0.002 0.998 31 H 0.044 0.956 32 H 0.336 0.664 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.206 -0.745 -16.428 16.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.059 3.941 3 C -0.178 4.178 4 C -0.564 4.564 5 H 0.060 0.940 6 C -0.177 4.177 7 N -0.543 5.543 8 Si 0.771 3.229 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.209 1.209 12 C -0.036 4.036 13 N -0.299 5.299 14 C -0.059 4.059 15 H 0.071 0.929 16 C -0.162 4.162 17 C -0.167 4.167 18 C -0.084 4.084 19 H 0.099 0.901 20 C -0.153 4.153 21 C -0.218 4.218 22 C -0.213 4.213 23 H 0.066 0.934 24 H 0.053 0.947 25 H 0.027 0.973 26 H 0.034 0.966 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.021 0.979 31 H 0.062 0.938 32 H 0.155 0.845 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.116 0.884 38 H 0.124 0.876 39 H 0.105 0.895 40 H 0.111 0.889 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.883 -0.957 -16.282 16.334 hybrid contribution 1.265 -0.191 1.431 1.920 sum 0.382 -1.148 -14.851 14.900 Atomic orbital electron populations 1.21432 0.97673 0.97576 0.99289 1.18147 0.92917 0.92318 0.90742 1.21655 0.97296 0.98863 0.99978 1.21468 1.30894 1.11964 0.92067 0.93962 1.25537 0.95354 0.95657 1.01157 1.69975 1.37471 1.23678 1.23197 0.85721 0.78080 0.78753 0.80327 1.19749 1.20804 1.20860 1.21749 0.94485 0.97116 0.90223 1.60738 1.62572 1.05871 1.00728 1.23119 0.96149 0.96982 0.89691 0.92889 1.22867 1.00099 0.96683 0.96587 1.22954 1.02812 0.95118 0.95775 1.21900 0.96250 0.95194 0.95015 0.90144 1.21852 0.94654 1.02426 0.96330 1.23112 0.95787 0.99179 1.03711 1.23043 1.03877 0.95172 0.99183 0.93415 0.94704 0.97324 0.96592 0.94740 0.92592 0.93335 0.97949 0.93766 0.84466 0.92559 0.90778 0.89137 0.89624 0.88370 0.87559 0.89544 0.88914 0.88027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.04 8.09 71.98 0.58 -4.46 16 2 C 0.06 2.90 0.57 -52.93 -0.03 2.87 16 3 C -0.12 -5.72 7.92 71.98 0.57 -5.15 16 4 C -0.53 -28.87 8.01 25.60 0.21 -28.67 16 5 H 0.04 2.34 7.74 -2.91 -0.02 2.32 16 6 C 0.02 1.20 5.15 84.65 0.44 1.63 16 7 N -0.90 -51.04 9.35 21.45 0.20 -50.84 16 8 Si 0.94 43.89 29.54 68.60 2.03 45.92 16 9 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 12 C 0.09 3.95 4.55 86.30 0.39 4.34 16 13 N -0.67 -23.23 4.35 -488.86 -2.12 -25.35 16 14 C 0.05 1.45 3.78 45.44 0.17 1.62 16 15 H 0.05 1.55 8.12 -2.39 -0.02 1.53 16 16 C -0.12 -3.29 7.58 31.12 0.24 -3.05 16 17 C -0.13 -2.61 7.42 31.12 0.23 -2.38 16 18 C -0.06 -1.50 4.20 -10.27 -0.04 -1.54 16 19 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 20 C -0.13 -3.22 5.32 -10.79 -0.06 -3.28 16 21 C -0.18 -3.77 9.76 30.62 0.30 -3.47 16 22 C -0.18 -3.43 10.26 30.62 0.31 -3.12 16 23 H 0.05 2.60 6.07 -2.39 -0.01 2.58 16 24 H 0.03 1.57 7.60 -2.39 -0.02 1.55 16 25 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 26 H 0.01 0.71 8.14 -2.38 -0.02 0.70 16 27 H 0.03 1.43 6.57 -2.39 -0.02 1.42 16 28 H 0.06 2.98 6.07 -2.39 -0.01 2.96 16 29 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 30 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16 31 H 0.04 1.94 8.14 -2.39 -0.02 1.93 16 32 H 0.34 11.62 6.50 -89.69 -0.58 11.04 16 33 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 35 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.09 1.55 5.45 -2.39 -0.01 1.53 16 37 H 0.10 2.88 6.85 -2.39 -0.02 2.86 16 38 H 0.11 1.94 5.74 -2.39 -0.01 1.93 16 39 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 41 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -56.87 311.76 3.82 -53.06 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: 0.41 Total: 21.86 kcal Atomic # 6 Polarization: -47.95 SS G_CDS: 3.31 Total: -44.64 kcal Atomic # 7 Polarization: -74.27 SS G_CDS: -1.92 Total: -76.19 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -56.87 3.82 -53.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459732139.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.058 kcal (2) G-P(sol) polarization free energy of solvation -56.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds