Wall clock time and date at job start Sun Mar 29 2020 22:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47551 * 2 1 4 4 C 1.50696 * 109.47249 * 120.00488 * 2 1 3 5 5 H 1.08002 * 120.00337 * 115.28754 * 4 2 1 6 6 C 1.37880 * 120.00081 * 295.56232 * 4 2 1 7 7 N 1.31505 * 120.00598 * 199.69948 * 6 4 2 8 8 Si 1.86807 * 119.99588 * 19.70259 * 6 4 2 9 9 H 1.48499 * 109.47060 * 84.63147 * 8 6 4 10 10 H 1.48496 * 109.46892 * 204.63222 * 8 6 4 11 11 H 1.48498 * 109.46868 * 324.63296 * 8 6 4 12 12 C 1.53003 * 109.46764 * 240.00031 * 2 1 3 13 13 N 1.46895 * 109.47158 * 60.00363 * 12 2 1 14 14 C 1.46897 * 111.00142 * 179.97438 * 13 12 2 15 15 H 1.09002 * 112.85146 * 25.33164 * 14 13 12 16 16 C 1.53789 * 113.61670 * 254.13526 * 14 13 12 17 17 C 1.53774 * 87.08109 * 270.88351 * 16 14 13 18 18 C 1.53784 * 113.61794 * 156.52636 * 14 13 12 19 19 H 1.08997 * 113.61907 * 203.66682 * 18 14 13 20 20 C 1.53007 * 113.61292 * 334.57253 * 18 14 13 21 21 C 1.52995 * 117.49329 * 248.61928 * 20 18 14 22 22 C 1.52990 * 117.49734 * 179.97438 * 20 18 14 23 23 H 1.09003 * 109.46680 * 299.99853 * 1 2 3 24 24 H 1.08995 * 109.47073 * 59.99581 * 1 2 3 25 25 H 1.08998 * 109.47403 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47509 * 189.04937 * 3 2 1 27 27 H 1.09003 * 109.46895 * 309.05565 * 3 2 1 28 28 H 1.09006 * 109.46681 * 69.04818 * 3 2 1 29 29 H 0.97000 * 120.00857 * 179.97438 * 7 6 4 30 30 H 1.09005 * 109.46892 * 180.02562 * 12 2 1 31 31 H 1.09002 * 109.47684 * 299.99918 * 12 2 1 32 32 H 1.00905 * 111.00210 * 56.04658 * 13 12 2 33 33 H 1.08998 * 113.61258 * 25.43177 * 16 14 13 34 34 H 1.09001 * 113.61183 * 156.33704 * 16 14 13 35 35 H 1.09002 * 113.61579 * 89.11543 * 17 16 14 36 36 H 1.09002 * 113.61774 * 219.93735 * 17 16 14 37 37 H 1.09003 * 115.54765 * 34.32692 * 20 18 14 38 38 H 1.08995 * 117.50371 * 0.02562 * 21 20 18 39 39 H 1.09004 * 117.49753 * 145.02317 * 21 20 18 40 40 H 1.09000 * 117.50129 * 214.97453 * 22 20 18 41 41 H 1.09006 * 117.50393 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.5891 -1.6309 1.1331 6 6 1.7764 -0.1886 2.4806 7 7 2.5084 -0.5565 3.5093 8 14 0.3896 1.0412 2.7133 9 1 -0.8908 0.3133 2.9029 10 1 0.6652 1.8776 3.9090 11 1 0.2921 1.9101 1.5131 12 6 2.0399 -0.7213 -1.2493 13 7 1.5503 -0.0287 -2.4487 14 6 2.0217 -0.6945 -3.6703 15 1 2.2427 -1.7510 -3.5183 16 6 3.1409 0.0707 -4.3963 17 6 2.0312 0.8091 -5.1630 18 6 1.1406 -0.4203 -4.9005 19 1 1.2164 -1.1870 -5.6716 20 6 -0.3068 -0.0678 -4.5515 21 6 -1.3900 -1.0827 -4.9222 22 6 -1.2622 0.2228 -5.7105 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1180 1.4467 -0.1616 27 1 1.5508 2.0008 -0.7981 28 1 1.8148 1.9074 0.9598 29 1 2.3287 -0.1891 4.3888 30 1 3.1300 -0.7217 -1.2491 31 1 1.6766 -1.7490 -1.2494 32 1 1.8198 0.9436 -2.4402 33 1 3.7236 0.7179 -3.7407 34 1 3.7626 -0.5621 -5.0297 35 1 1.6839 1.7141 -4.6647 36 1 2.2596 0.9673 -6.2170 37 1 -0.4433 0.5014 -3.6320 38 1 -1.0716 -2.0016 -5.4143 39 1 -2.2396 -1.1814 -4.2464 40 1 -2.0278 0.9826 -5.5532 41 1 -0.8597 0.1634 -6.7217 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459732140.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:21 Heat of formation + Delta-G solvation = 51.975467 kcal Electronic energy + Delta-G solvation = -17735.950390 eV Core-core repulsion = 15231.553442 eV Total energy + Delta-G solvation = -2504.396949 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.63755 -36.81899 -35.77557 -32.48436 -30.91797 -26.18483 -26.03290 -25.31770 -24.84755 -23.42033 -22.12076 -20.75303 -18.80282 -18.68361 -16.11645 -15.91910 -15.52609 -15.05757 -14.57802 -13.85306 -13.40900 -13.22990 -13.07979 -12.72931 -12.46826 -12.40833 -11.97777 -11.82678 -11.74425 -11.43584 -11.04902 -10.75782 -10.61520 -10.40888 -10.26901 -10.06320 -10.02411 -9.80481 -9.71889 -9.45642 -9.00412 -8.52959 -8.26335 -7.78303 -6.08836 -4.00194 3.34019 3.44087 3.46084 3.93806 4.46371 4.52907 4.75242 4.76356 4.92001 5.05442 5.23878 5.26236 5.30718 5.43191 5.62325 5.72129 5.76878 5.90218 5.94520 5.98363 6.03443 6.11449 6.18161 6.22711 6.32196 6.35757 6.36130 6.59747 6.65581 6.71421 6.74265 6.89127 6.96606 7.07241 7.42052 7.60775 7.62172 7.85845 7.99860 8.57212 8.99033 9.60066 11.04532 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.032455 B = 0.006558 C = 0.005983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.518717 B = 4268.686988 C = 4678.971145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.042 3.958 3 C -0.143 4.143 4 C -0.516 4.516 5 H 0.070 0.930 6 C 0.076 3.924 7 N -0.892 5.892 8 Si 0.877 3.123 9 H -0.287 1.287 10 H -0.307 1.307 11 H -0.245 1.245 12 C 0.086 3.914 13 N -0.666 5.666 14 C 0.077 3.923 15 H 0.077 0.923 16 C -0.175 4.175 17 C -0.129 4.129 18 C -0.075 4.075 19 H 0.082 0.918 20 C -0.115 4.115 21 C -0.182 4.182 22 C -0.193 4.193 23 H 0.030 0.970 24 H 0.040 0.960 25 H 0.043 0.957 26 H 0.039 0.961 27 H 0.026 0.974 28 H 0.052 0.948 29 H 0.262 0.738 30 H 0.022 0.978 31 H 0.063 0.937 32 H 0.338 0.662 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.121 0.879 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.342 2.495 -17.049 17.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.041 3.959 3 C -0.200 4.200 4 C -0.553 4.553 5 H 0.088 0.912 6 C -0.126 4.126 7 N -0.528 5.528 8 Si 0.709 3.291 9 H -0.214 1.214 10 H -0.235 1.235 11 H -0.171 1.171 12 C -0.042 4.042 13 N -0.296 5.296 14 C -0.034 4.034 15 H 0.096 0.904 16 C -0.214 4.214 17 C -0.167 4.167 18 C -0.094 4.094 19 H 0.100 0.900 20 C -0.134 4.134 21 C -0.219 4.219 22 C -0.230 4.230 23 H 0.049 0.951 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.045 0.955 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.041 0.959 31 H 0.081 0.919 32 H 0.157 0.843 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.139 0.861 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.105 0.895 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.901 2.175 -16.828 17.411 hybrid contribution 0.173 0.774 0.303 0.850 sum -3.728 2.949 -16.525 17.195 Atomic orbital electron populations 1.22151 0.98362 1.00089 0.98440 1.18442 0.92041 0.92248 0.93184 1.22294 0.99359 0.98393 0.99970 1.20825 1.35566 1.10192 0.88746 0.91195 1.24945 0.95728 0.95878 0.96026 1.70023 1.37069 1.45075 1.00680 0.87467 0.83177 0.82139 0.76363 1.21401 1.23527 1.17054 1.21978 0.96200 0.97677 0.88355 1.60416 1.62385 1.06121 1.00664 1.22580 0.92580 0.97979 0.90278 0.90448 1.23610 0.97271 1.00189 1.00334 1.22885 0.96403 0.97718 0.99687 1.22304 0.92292 0.97329 0.97458 0.89967 1.22154 0.89972 1.02381 0.98857 1.22871 1.01959 0.93340 1.03726 1.22905 1.03586 0.99726 0.96751 0.95119 0.94064 0.93799 0.94190 0.95478 0.92905 0.92791 0.95949 0.91888 0.84296 0.91519 0.90373 0.90073 0.92211 0.86107 0.89538 0.89231 0.89455 0.89624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 7.64 37.16 0.28 -2.62 16 2 C 0.04 0.95 0.57 -155.66 -0.09 0.86 16 3 C -0.14 -3.05 7.22 37.16 0.27 -2.78 16 4 C -0.52 -14.19 8.60 -34.44 -0.30 -14.49 16 5 H 0.07 2.09 7.99 -52.49 -0.42 1.68 16 6 C 0.08 2.19 5.23 -17.82 -0.09 2.09 16 7 N -0.89 -27.19 13.96 55.43 0.77 -26.42 16 8 Si 0.88 21.86 22.96 -169.99 -3.90 17.95 16 9 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 10 H -0.31 -7.77 7.11 56.52 0.40 -7.36 16 11 H -0.24 -5.65 4.61 56.52 0.26 -5.39 16 12 C 0.09 1.68 4.43 -3.83 -0.02 1.66 16 13 N -0.67 -10.59 4.36 -105.86 -0.46 -11.05 16 14 C 0.08 1.06 4.12 -66.90 -0.28 0.78 16 15 H 0.08 1.10 7.88 -51.93 -0.41 0.69 16 16 C -0.17 -2.07 7.61 -25.92 -0.20 -2.27 16 17 C -0.13 -1.44 7.41 -25.78 -0.19 -1.63 16 18 C -0.07 -0.89 3.80 -89.66 -0.34 -1.23 16 19 H 0.08 0.92 8.13 -51.93 -0.42 0.50 16 20 C -0.12 -1.45 5.14 -90.62 -0.47 -1.92 16 21 C -0.18 -2.15 10.24 -26.71 -0.27 -2.42 16 22 C -0.19 -2.11 10.25 -26.71 -0.27 -2.38 16 23 H 0.03 0.70 2.60 -51.93 -0.14 0.57 16 24 H 0.04 0.81 7.60 -51.93 -0.39 0.41 16 25 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.04 0.83 8.12 -51.93 -0.42 0.41 16 27 H 0.03 0.50 7.03 -51.93 -0.37 0.13 16 28 H 0.05 1.21 4.04 -51.93 -0.21 1.00 16 29 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 32 H 0.34 5.28 6.34 -39.29 -0.25 5.03 16 33 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.94 8.00 -51.93 -0.42 0.52 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.12 1.75 7.19 -51.93 -0.37 1.37 16 38 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 306.97 15.07 4.63 4.63 Total: -1.00 -28.49 306.97 -8.24 -36.73 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -7.32 Total: 4.52 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: -1.96 Total: -26.35 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: 0.31 Total: -37.48 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -3.90 Total: 17.95 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.49 -8.24 -36.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459732140.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.707 kcal (2) G-P(sol) polarization free energy of solvation -28.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds