Wall clock time and date at job start Sun Mar 29 2020 22:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47551 * 2 1 4 4 C 1.50696 * 109.47249 * 120.00488 * 2 1 3 5 5 H 1.08002 * 120.00337 * 115.28754 * 4 2 1 6 6 C 1.37880 * 120.00081 * 295.56232 * 4 2 1 7 7 N 1.31505 * 120.00598 * 199.69948 * 6 4 2 8 8 Si 1.86807 * 119.99588 * 19.70259 * 6 4 2 9 9 H 1.48499 * 109.47060 * 84.63147 * 8 6 4 10 10 H 1.48496 * 109.46892 * 204.63222 * 8 6 4 11 11 H 1.48498 * 109.46868 * 324.63296 * 8 6 4 12 12 C 1.53003 * 109.46764 * 240.00031 * 2 1 3 13 13 N 1.46895 * 109.47158 * 60.00363 * 12 2 1 14 14 C 1.46897 * 111.00142 * 179.97438 * 13 12 2 15 15 H 1.09002 * 112.85146 * 25.33164 * 14 13 12 16 16 C 1.53789 * 113.61670 * 254.13526 * 14 13 12 17 17 C 1.53774 * 87.08109 * 270.88351 * 16 14 13 18 18 C 1.53784 * 113.61794 * 156.52636 * 14 13 12 19 19 H 1.08997 * 113.61907 * 203.66682 * 18 14 13 20 20 C 1.53007 * 113.61292 * 334.57253 * 18 14 13 21 21 C 1.52995 * 117.49329 * 248.61928 * 20 18 14 22 22 C 1.52990 * 117.49734 * 179.97438 * 20 18 14 23 23 H 1.09003 * 109.46680 * 299.99853 * 1 2 3 24 24 H 1.08995 * 109.47073 * 59.99581 * 1 2 3 25 25 H 1.08998 * 109.47403 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47509 * 189.04937 * 3 2 1 27 27 H 1.09003 * 109.46895 * 309.05565 * 3 2 1 28 28 H 1.09006 * 109.46681 * 69.04818 * 3 2 1 29 29 H 0.97000 * 120.00857 * 179.97438 * 7 6 4 30 30 H 1.09005 * 109.46892 * 180.02562 * 12 2 1 31 31 H 1.09002 * 109.47684 * 299.99918 * 12 2 1 32 32 H 1.00905 * 111.00210 * 56.04658 * 13 12 2 33 33 H 1.08998 * 113.61258 * 25.43177 * 16 14 13 34 34 H 1.09001 * 113.61183 * 156.33704 * 16 14 13 35 35 H 1.09002 * 113.61579 * 89.11543 * 17 16 14 36 36 H 1.09002 * 113.61774 * 219.93735 * 17 16 14 37 37 H 1.09003 * 115.54765 * 34.32692 * 20 18 14 38 38 H 1.08995 * 117.50371 * 0.02562 * 21 20 18 39 39 H 1.09004 * 117.49753 * 145.02317 * 21 20 18 40 40 H 1.09000 * 117.50129 * 214.97453 * 22 20 18 41 41 H 1.09006 * 117.50393 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.5891 -1.6309 1.1331 6 6 1.7764 -0.1886 2.4806 7 7 2.5084 -0.5565 3.5093 8 14 0.3896 1.0412 2.7133 9 1 -0.8908 0.3133 2.9029 10 1 0.6652 1.8776 3.9090 11 1 0.2921 1.9101 1.5131 12 6 2.0399 -0.7213 -1.2493 13 7 1.5503 -0.0287 -2.4487 14 6 2.0217 -0.6945 -3.6703 15 1 2.2427 -1.7510 -3.5183 16 6 3.1409 0.0707 -4.3963 17 6 2.0312 0.8091 -5.1630 18 6 1.1406 -0.4203 -4.9005 19 1 1.2164 -1.1870 -5.6716 20 6 -0.3068 -0.0678 -4.5515 21 6 -1.3900 -1.0827 -4.9222 22 6 -1.2622 0.2228 -5.7105 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1180 1.4467 -0.1616 27 1 1.5508 2.0008 -0.7981 28 1 1.8148 1.9074 0.9598 29 1 2.3287 -0.1891 4.3888 30 1 3.1300 -0.7217 -1.2491 31 1 1.6766 -1.7490 -1.2494 32 1 1.8198 0.9436 -2.4402 33 1 3.7236 0.7179 -3.7407 34 1 3.7626 -0.5621 -5.0297 35 1 1.6839 1.7141 -4.6647 36 1 2.2596 0.9673 -6.2170 37 1 -0.4433 0.5014 -3.6320 38 1 -1.0716 -2.0016 -5.4143 39 1 -2.2396 -1.1814 -4.2464 40 1 -2.0278 0.9826 -5.5532 41 1 -0.8597 0.1634 -6.7217 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459732140.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:20 Heat of formation + Delta-G solvation = 35.628712 kcal Electronic energy + Delta-G solvation = -17736.659239 eV Core-core repulsion = 15231.553442 eV Total energy + Delta-G solvation = -2505.105797 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.68586 -38.39629 -36.84940 -34.35673 -32.60107 -27.89215 -27.11925 -26.96793 -26.48380 -24.74028 -22.98540 -21.69420 -20.62069 -19.74581 -18.02979 -17.38213 -16.88768 -16.41621 -15.74794 -15.04201 -14.98519 -14.79328 -14.58533 -14.13755 -14.04749 -13.67478 -13.59671 -13.57926 -12.80029 -12.54886 -12.35272 -12.27363 -12.02586 -11.95531 -11.69552 -11.58538 -11.45170 -11.30652 -10.99957 -10.69405 -10.50127 -10.43043 -10.22151 -9.10073 -8.30790 -6.25213 1.36157 1.39571 1.49171 2.36452 3.02437 3.05754 3.34316 3.79373 3.82784 3.97307 4.11084 4.28323 4.32852 4.37137 4.45255 4.54107 4.59994 4.71736 4.78693 4.89129 4.91673 4.94712 4.97486 4.99296 5.05599 5.12350 5.13226 5.19736 5.22814 5.32867 5.37435 5.38063 5.43745 5.63611 5.74145 5.78944 5.89533 6.30165 6.37995 6.64709 6.81227 7.38086 8.86508 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.032455 B = 0.006558 C = 0.005983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.518717 B = 4268.686988 C = 4678.971145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.037 3.963 3 C -0.139 4.139 4 C -0.518 4.518 5 H 0.027 0.973 6 C 0.021 3.979 7 N -0.943 5.943 8 Si 0.933 3.067 9 H -0.287 1.287 10 H -0.313 1.313 11 H -0.208 1.208 12 C 0.102 3.898 13 N -0.657 5.657 14 C 0.063 3.937 15 H 0.066 0.934 16 C -0.169 4.169 17 C -0.120 4.120 18 C -0.065 4.065 19 H 0.094 0.906 20 C -0.129 4.129 21 C -0.190 4.190 22 C -0.176 4.176 23 H 0.022 0.978 24 H 0.068 0.932 25 H 0.035 0.965 26 H 0.037 0.963 27 H 0.061 0.939 28 H 0.038 0.962 29 H 0.263 0.737 30 H 0.008 0.992 31 H 0.048 0.952 32 H 0.342 0.658 33 H 0.058 0.942 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.564 4.143 -19.764 20.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.036 3.964 3 C -0.197 4.197 4 C -0.556 4.556 5 H 0.045 0.955 6 C -0.176 4.176 7 N -0.582 5.582 8 Si 0.762 3.238 9 H -0.214 1.214 10 H -0.242 1.242 11 H -0.132 1.132 12 C -0.027 4.027 13 N -0.288 5.288 14 C -0.048 4.048 15 H 0.085 0.915 16 C -0.208 4.208 17 C -0.158 4.158 18 C -0.084 4.084 19 H 0.112 0.888 20 C -0.148 4.148 21 C -0.227 4.227 22 C -0.213 4.213 23 H 0.041 0.959 24 H 0.087 0.913 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.027 0.973 31 H 0.067 0.933 32 H 0.162 0.838 33 H 0.077 0.923 34 H 0.110 0.890 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.121 0.879 38 H 0.110 0.890 39 H 0.103 0.897 40 H 0.111 0.889 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.129 3.828 -19.586 20.605 hybrid contribution 0.624 0.143 1.106 1.278 sum -4.505 3.971 -18.480 19.431 Atomic orbital electron populations 1.22062 0.97163 1.00006 0.99241 1.18439 0.92895 0.92924 0.92115 1.22202 0.99711 0.97372 1.00386 1.21177 1.34426 1.08887 0.91096 0.95482 1.25751 0.97856 0.98336 0.95690 1.70157 1.39222 1.47509 1.01319 0.86548 0.79542 0.80373 0.77305 1.21429 1.24212 1.13191 1.21611 0.95149 0.96960 0.89021 1.60337 1.62236 1.06106 1.00105 1.22713 0.94650 0.97460 0.90021 0.91538 1.23576 0.97072 0.99992 1.00163 1.22840 0.95247 0.97064 1.00606 1.22263 0.91789 0.98041 0.96321 0.88787 1.22082 0.90571 1.03037 0.99073 1.22930 1.01590 0.94036 1.04117 1.22951 1.02655 0.98968 0.96725 0.95915 0.91315 0.94545 0.94336 0.91981 0.94348 0.92848 0.97334 0.93295 0.83818 0.92277 0.88995 0.90316 0.90420 0.87903 0.88968 0.89738 0.88909 0.88313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.30 7.64 71.98 0.55 -4.75 16 2 C 0.04 1.65 0.57 -52.93 -0.03 1.62 16 3 C -0.14 -5.64 7.22 71.98 0.52 -5.12 16 4 C -0.52 -29.23 8.60 25.60 0.22 -29.01 16 5 H 0.03 1.70 7.99 -2.91 -0.02 1.68 16 6 C 0.02 1.24 5.23 84.66 0.44 1.68 16 7 N -0.94 -59.45 13.96 21.45 0.30 -59.16 16 8 Si 0.93 44.86 22.96 68.60 1.58 46.43 16 9 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 10 H -0.31 -15.29 7.11 99.48 0.71 -14.58 16 11 H -0.21 -8.78 4.61 99.48 0.46 -8.32 16 12 C 0.10 3.93 4.43 86.31 0.38 4.32 16 13 N -0.66 -19.75 4.36 -488.83 -2.13 -21.88 16 14 C 0.06 1.59 4.12 45.45 0.19 1.78 16 15 H 0.07 1.84 7.88 -2.39 -0.02 1.82 16 16 C -0.17 -3.58 7.61 31.12 0.24 -3.35 16 17 C -0.12 -2.26 7.41 31.21 0.23 -2.03 16 18 C -0.07 -1.36 3.80 -10.17 -0.04 -1.40 16 19 H 0.09 1.79 8.13 -2.39 -0.02 1.77 16 20 C -0.13 -2.90 5.14 -10.80 -0.06 -2.96 16 21 C -0.19 -4.03 10.24 30.61 0.31 -3.72 16 22 C -0.18 -3.29 10.25 30.60 0.31 -2.97 16 23 H 0.02 0.97 2.60 -2.39 -0.01 0.96 16 24 H 0.07 2.47 7.60 -2.39 -0.02 2.45 16 25 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.04 1.54 8.12 -2.39 -0.02 1.52 16 27 H 0.06 2.07 7.03 -2.39 -0.02 2.05 16 28 H 0.04 1.65 4.04 -2.38 -0.01 1.64 16 29 H 0.26 15.65 8.31 -92.71 -0.77 14.87 16 30 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 31 H 0.05 2.01 8.13 -2.39 -0.02 1.99 16 32 H 0.34 9.78 6.34 -89.69 -0.57 9.21 16 33 H 0.06 1.36 8.09 -2.39 -0.02 1.34 16 34 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.08 1.54 8.00 -2.39 -0.02 1.53 16 36 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.10 2.71 7.19 -2.39 -0.02 2.70 16 38 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 40 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 Total: -1.00 -62.51 306.97 3.19 -59.32 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 0.17 Total: 21.19 kcal Atomic # 6 Polarization: -49.18 SS G_CDS: 3.27 Total: -45.91 kcal Atomic # 7 Polarization: -79.20 SS G_CDS: -1.83 Total: -81.03 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.58 Total: 46.43 kcal Total: -62.51 3.19 -59.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459732140.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.949 kcal (2) G-P(sol) polarization free energy of solvation -62.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds