Wall clock time and date at job start Sun Mar 29 2020 21:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46734 * 2 1 4 4 C 1.53004 * 109.47161 * 240.00641 * 2 1 3 5 5 C 1.50701 * 109.47211 * 175.00101 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48494 * 109.47230 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47301 * 119.99669 * 9 7 5 12 12 H 1.48498 * 109.47430 * 239.99516 * 9 7 5 13 13 N 1.46900 * 109.47628 * 120.00122 * 2 1 3 14 14 C 1.46903 * 111.00036 * 275.00445 * 13 2 1 15 15 H 1.09004 * 109.47047 * 34.99364 * 14 13 2 16 16 C 1.52996 * 109.46675 * 274.99814 * 14 13 2 17 17 C 1.50695 * 109.47133 * 154.99686 * 14 13 2 18 18 C 1.39865 * 125.89928 * 204.71215 * 17 14 13 19 19 C 1.35316 * 107.92239 * 179.86328 * 18 17 14 20 20 N 1.34947 * 107.74526 * 0.39511 * 19 18 17 21 21 C 1.46501 * 126.03789 * 179.74677 * 20 19 18 22 22 N 1.30842 * 125.89839 * 25.02262 * 17 14 13 23 23 H 1.09004 * 109.46944 * 299.99471 * 1 2 3 24 24 H 1.09001 * 109.47261 * 59.99525 * 1 2 3 25 25 H 1.09000 * 109.46927 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47211 * 54.99128 * 4 2 1 27 27 H 1.09007 * 109.46376 * 294.99670 * 4 2 1 28 28 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 29 29 H 1.00895 * 111.00149 * 151.04630 * 13 2 1 30 30 H 1.09000 * 109.46816 * 180.02562 * 16 14 13 31 31 H 1.09004 * 109.47015 * 299.99569 * 16 14 13 32 32 H 1.08997 * 109.47740 * 59.99639 * 16 14 13 33 33 H 1.08005 * 126.03840 * 359.97438 * 18 17 14 34 34 H 1.08000 * 126.12703 * 180.14791 * 19 18 17 35 35 H 1.09000 * 109.47250 * 269.97972 * 21 20 19 36 36 H 1.08997 * 109.47056 * 29.98006 * 21 20 19 37 37 H 1.08999 * 109.46612 * 149.97723 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2298 -1.1880 -2.3612 8 7 3.5759 -1.8323 -3.3029 9 14 6.0908 -1.0495 -2.4440 10 1 6.5825 -0.2803 -1.2728 11 1 6.6894 -2.4085 -2.4309 12 1 6.4800 -0.3493 -3.6943 13 7 2.0197 -0.6925 1.1994 14 6 2.0825 0.2226 2.3469 15 1 1.2576 0.9329 2.2907 16 6 3.4111 0.9809 2.3223 17 6 1.9787 -0.5677 3.6258 18 6 1.5225 -0.0818 4.8554 19 6 1.5783 -1.0952 5.7503 20 7 2.0613 -2.1816 5.1118 21 6 2.2902 -3.5004 5.7073 22 7 2.3051 -1.8255 3.7791 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6052 -0.2616 -2.1370 27 1 1.7516 -1.7714 -1.2057 28 1 4.0598 -2.2352 -4.0406 29 1 2.9173 -1.1204 1.0286 30 1 3.4578 1.6595 3.1740 31 1 4.2360 0.2705 2.3785 32 1 3.4862 1.5524 1.3972 33 1 1.1837 0.9242 5.0549 34 1 1.2918 -1.0428 6.7903 35 1 3.3043 -3.5488 6.1042 36 1 1.5760 -3.6636 6.5143 37 1 2.1607 -4.2699 4.9463 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000514675318.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:32 Heat of formation + Delta-G solvation = 43.700377 kcal Electronic energy + Delta-G solvation = -16917.354883 eV Core-core repulsion = 14309.058756 eV Total energy + Delta-G solvation = -2608.296127 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.96255 -38.67334 -35.48911 -34.21937 -32.69447 -30.81355 -29.38493 -28.95803 -27.37387 -25.16691 -23.76039 -21.95990 -20.94098 -20.23068 -18.48490 -17.79323 -16.72059 -16.45601 -16.25802 -15.81773 -15.05325 -14.66531 -14.42083 -14.31638 -13.81044 -13.71532 -13.46836 -13.34887 -13.22523 -13.05368 -12.82842 -12.63467 -12.42624 -12.26624 -12.24345 -11.88223 -11.38795 -11.19871 -10.94723 -10.56885 -10.07163 -9.36198 -9.07392 -8.17802 -6.27154 1.13861 1.37884 1.38962 1.50954 1.84456 1.98161 2.40708 3.13650 3.43902 3.73507 4.07477 4.21168 4.26025 4.36192 4.43588 4.48576 4.61795 4.69505 4.72658 4.75938 4.87176 4.91966 5.02491 5.08092 5.21479 5.23799 5.26929 5.36892 5.52509 5.59905 5.81144 5.87597 6.23652 6.34180 6.48740 6.66699 6.88048 7.01876 7.41037 8.94387 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.025261 B = 0.006169 C = 0.005678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.152892 B = 4538.012266 C = 4930.472951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.096 3.904 3 H 0.035 0.965 4 C 0.028 3.972 5 C -0.527 4.527 6 H 0.059 0.941 7 C 0.003 3.997 8 N -0.932 5.932 9 Si 0.958 3.042 10 H -0.264 1.264 11 H -0.282 1.282 12 H -0.278 1.278 13 N -0.677 5.677 14 C 0.162 3.838 15 H 0.101 0.899 16 C -0.164 4.164 17 C 0.075 3.925 18 C -0.289 4.289 19 C 0.059 3.941 20 N -0.392 5.392 21 C 0.096 3.904 22 N -0.324 5.324 23 H 0.062 0.938 24 H 0.055 0.945 25 H 0.041 0.959 26 H -0.003 1.003 27 H -0.009 1.009 28 H 0.262 0.738 29 H 0.342 0.658 30 H 0.081 0.919 31 H 0.038 0.962 32 H 0.056 0.944 33 H 0.164 0.836 34 H 0.216 0.784 35 H 0.082 0.918 36 H 0.120 0.880 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.679 2.956 20.460 20.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.013 4.013 3 H 0.053 0.947 4 C -0.009 4.009 5 C -0.565 4.565 6 H 0.077 0.923 7 C -0.195 4.195 8 N -0.573 5.573 9 Si 0.784 3.216 10 H -0.188 1.188 11 H -0.208 1.208 12 H -0.204 1.204 13 N -0.309 5.309 14 C 0.049 3.951 15 H 0.119 0.881 16 C -0.223 4.223 17 C -0.092 4.092 18 C -0.319 4.319 19 C -0.087 4.087 20 N -0.174 5.174 21 C -0.045 4.045 22 N -0.146 5.146 23 H 0.081 0.919 24 H 0.074 0.926 25 H 0.060 0.940 26 H 0.016 0.984 27 H 0.009 0.991 28 H 0.071 0.929 29 H 0.162 0.838 30 H 0.100 0.900 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.182 0.818 34 H 0.233 0.767 35 H 0.101 0.899 36 H 0.138 0.862 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.803 1.384 19.983 20.389 hybrid contribution 1.406 0.867 -0.520 1.732 sum -2.397 2.251 19.463 19.739 Atomic orbital electron populations 1.21722 0.94723 1.01017 1.01024 1.21444 0.94862 0.95228 0.89777 0.94749 1.19130 0.94951 0.94460 0.92397 1.21556 0.93227 1.33825 1.07904 0.92302 1.25877 1.03188 0.94963 0.95467 1.70105 1.37377 1.37088 1.12682 0.85496 0.80080 0.77821 0.78230 1.18773 1.20788 1.20398 1.60543 1.34271 1.31963 1.04104 1.19957 0.97937 0.91334 0.85823 0.88146 1.22331 0.96852 1.00509 1.02630 1.22431 0.98465 0.91959 0.96347 1.21647 1.15755 1.02449 0.92041 1.23146 0.98741 0.86207 1.00653 1.48993 1.49964 1.11525 1.06940 1.22095 1.04001 0.79330 0.99024 1.77457 1.25383 1.15888 0.95904 0.91912 0.92550 0.94019 0.98425 0.99093 0.92939 0.83823 0.89994 0.94235 0.92473 0.81806 0.76730 0.89919 0.86165 0.90536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.71 9.40 71.98 0.68 -4.04 16 2 C 0.10 4.17 2.40 44.92 0.11 4.27 16 3 H 0.03 1.46 7.11 -2.38 -0.02 1.44 16 4 C 0.03 1.52 4.57 29.85 0.14 1.66 16 5 C -0.53 -30.08 8.12 25.60 0.21 -29.87 16 6 H 0.06 3.23 7.49 -2.91 -0.02 3.21 16 7 C 0.00 0.16 5.46 84.65 0.46 0.62 16 8 N -0.93 -57.89 13.29 21.45 0.28 -57.60 16 9 Si 0.96 45.43 29.54 68.60 2.03 47.46 16 10 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 13 N -0.68 -28.34 5.88 -473.31 -2.78 -31.12 16 14 C 0.16 5.48 2.88 44.17 0.13 5.61 16 15 H 0.10 3.08 7.11 -2.38 -0.02 3.07 16 16 C -0.16 -5.21 9.13 71.98 0.66 -4.55 16 17 C 0.07 2.47 6.19 43.10 0.27 2.74 16 18 C -0.29 -7.22 10.74 21.99 0.24 -6.99 16 19 C 0.06 1.20 11.49 83.54 0.96 2.16 16 20 N -0.39 -10.11 4.01 -369.57 -1.48 -11.59 16 21 C 0.10 1.54 11.47 127.77 1.47 3.00 16 22 N -0.32 -11.64 12.35 -47.39 -0.59 -12.22 16 23 H 0.06 1.99 7.43 -2.38 -0.02 1.97 16 24 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 27 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 28 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 29 H 0.34 16.23 6.95 -89.70 -0.62 15.61 16 30 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.04 1.38 8.13 -2.38 -0.02 1.36 16 32 H 0.06 1.90 7.43 -2.39 -0.02 1.88 16 33 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 34 H 0.22 2.07 8.06 -2.91 -0.02 2.05 16 35 H 0.08 1.11 8.14 -2.39 -0.02 1.10 16 36 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -72.87 309.44 3.18 -69.69 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 0.41 Total: 20.77 kcal Atomic # 6 Polarization: -30.69 SS G_CDS: 5.30 Total: -25.39 kcal Atomic # 7 Polarization: -107.97 SS G_CDS: -4.56 Total: -112.53 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -72.87 3.18 -69.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514675318.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.394 kcal (2) G-P(sol) polarization free energy of solvation -72.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds