Wall clock time and date at job start Sun Mar 29 2020 21:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47201 * 2 1 4 4 C 1.53001 * 109.47359 * 119.99945 * 2 1 3 5 5 C 1.50700 * 109.47225 * 185.00076 * 4 2 1 6 6 H 1.08003 * 120.00267 * 359.97438 * 5 4 2 7 7 C 1.37882 * 120.00192 * 180.02562 * 5 4 2 8 8 N 1.31518 * 119.99622 * 359.97438 * 7 5 4 9 9 Si 1.86791 * 120.00034 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47353 * 59.99813 * 9 7 5 11 11 H 1.48501 * 109.47206 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47444 * 299.99509 * 9 7 5 13 13 N 1.46908 * 109.46974 * 239.99816 * 2 1 3 14 14 C 1.46894 * 110.99837 * 85.00191 * 13 2 1 15 15 H 1.09002 * 109.47104 * 324.99694 * 14 13 2 16 16 C 1.52997 * 109.47515 * 84.99962 * 14 13 2 17 17 C 1.50699 * 109.46922 * 205.00026 * 14 13 2 18 18 C 1.39880 * 125.89929 * 154.99723 * 17 14 13 19 19 C 1.35319 * 107.91779 * 180.02562 * 18 17 14 20 20 N 1.34945 * 107.74734 * 359.97438 * 19 18 17 21 21 C 1.46505 * 126.03519 * 180.02562 * 20 19 18 22 22 N 1.30836 * 125.89860 * 334.69208 * 17 14 13 23 23 H 1.08997 * 109.46833 * 299.99845 * 1 2 3 24 24 H 1.08994 * 109.47425 * 60.00080 * 1 2 3 25 25 H 1.09007 * 109.46875 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46895 * 304.99855 * 4 2 1 27 27 H 1.09004 * 109.47545 * 64.99782 * 4 2 1 28 28 H 0.96993 * 119.99525 * 180.02562 * 8 7 5 29 29 H 1.00903 * 110.99526 * 208.95241 * 13 2 1 30 30 H 1.09002 * 109.47153 * 59.99762 * 16 14 13 31 31 H 1.09001 * 109.46832 * 299.99953 * 16 14 13 32 32 H 1.09004 * 109.47261 * 179.97438 * 16 14 13 33 33 H 1.07998 * 126.03830 * 359.97438 * 18 17 14 34 34 H 1.07995 * 126.12025 * 180.02562 * 19 18 17 35 35 H 1.08993 * 109.47379 * 90.00298 * 21 20 19 36 36 H 1.09006 * 109.46943 * 210.00107 * 21 20 19 37 37 H 1.08994 * 109.47107 * 329.99314 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5420 -0.6149 1.3127 6 1 4.0791 -0.0861 0.5391 7 6 4.2306 -1.1935 2.3578 8 7 3.5766 -1.8378 3.2995 9 14 6.0922 -1.0622 2.4360 10 1 6.4856 0.3685 2.4956 11 1 6.5873 -1.7621 3.6485 12 1 6.6839 -1.6882 1.2264 13 7 2.0197 -0.6926 -1.1995 14 6 2.0825 0.2225 -2.3469 15 1 1.2576 0.9328 -2.2907 16 6 3.4111 0.9808 -2.3225 17 6 1.9785 -0.5678 -3.6258 18 6 1.5170 -0.0832 -4.8542 19 6 1.5770 -1.0955 -5.7501 20 7 2.0599 -2.1819 -5.1116 21 6 2.2884 -3.5009 -5.7070 22 7 2.3097 -1.8240 -3.7804 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.6055 -0.2617 2.1369 27 1 1.7517 -1.7715 1.2057 28 1 4.0610 -2.2445 4.0348 29 1 2.9173 -1.1206 -1.0287 30 1 4.2359 0.2704 -2.3787 31 1 3.4862 1.5524 -1.3974 32 1 3.4578 1.6595 -3.1742 33 1 1.1727 0.9211 -5.0522 34 1 1.2906 -1.0431 -6.7901 35 1 3.3020 -3.5495 -6.1045 36 1 2.1594 -4.2704 -4.9458 37 1 1.5735 -3.6642 -6.5134 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514675519.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:35 Heat of formation + Delta-G solvation = 66.025628 kcal Electronic energy + Delta-G solvation = -16916.458009 eV Core-core repulsion = 14309.129977 eV Total energy + Delta-G solvation = -2607.328031 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.90917 -37.09113 -33.88812 -32.49487 -31.30472 -29.75331 -27.52780 -27.31943 -26.39887 -23.26293 -22.32922 -20.92960 -19.25611 -19.02378 -16.80510 -16.25770 -15.32255 -14.94830 -14.80678 -14.24298 -13.75602 -13.43416 -13.20488 -12.81905 -12.58259 -12.40794 -12.35198 -11.75455 -11.64629 -11.43391 -11.18668 -10.96466 -10.68983 -10.63497 -10.45664 -10.15525 -10.14895 -9.18550 -8.99556 -8.93243 -8.35124 -8.31788 -7.48859 -5.95746 -3.98018 2.13137 2.73170 3.09306 3.35822 3.40252 3.42673 4.49226 4.63121 4.77140 5.04795 5.13129 5.19507 5.38882 5.41679 5.58584 5.68291 5.80196 5.93033 6.05927 6.08652 6.12887 6.28364 6.34021 6.44317 6.56575 6.65941 6.92061 7.04017 7.04764 7.20386 7.62124 7.71980 8.03245 8.05632 8.22016 8.41372 8.47603 9.07871 9.65525 11.15331 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.025226 B = 0.006175 C = 0.005681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.685564 B = 4532.965473 C = 4927.768943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.087 3.913 3 H 0.031 0.969 4 C 0.021 3.979 5 C -0.521 4.521 6 H 0.052 0.948 7 C 0.061 3.939 8 N -0.892 5.892 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.670 5.670 14 C 0.162 3.838 15 H 0.087 0.913 16 C -0.173 4.173 17 C 0.095 3.905 18 C -0.272 4.272 19 C 0.042 3.958 20 N -0.388 5.388 21 C 0.105 3.895 22 N -0.264 5.264 23 H 0.047 0.953 24 H 0.036 0.964 25 H 0.053 0.947 26 H 0.021 0.979 27 H 0.025 0.975 28 H 0.260 0.740 29 H 0.360 0.640 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.142 0.858 34 H 0.167 0.833 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.831 1.982 -17.727 18.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.022 4.022 3 H 0.049 0.951 4 C -0.016 4.016 5 C -0.559 4.559 6 H 0.071 0.929 7 C -0.141 4.141 8 N -0.531 5.531 9 Si 0.716 3.284 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.304 5.304 14 C 0.049 3.951 15 H 0.105 0.895 16 C -0.233 4.233 17 C -0.073 4.073 18 C -0.302 4.302 19 C -0.104 4.104 20 N -0.170 5.170 21 C -0.037 4.037 22 N -0.085 5.085 23 H 0.066 0.934 24 H 0.055 0.945 25 H 0.072 0.928 26 H 0.039 0.961 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.182 0.818 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.160 0.840 34 H 0.184 0.816 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.941 0.394 -17.227 17.677 hybrid contribution 1.498 1.225 -0.252 1.952 sum -2.443 1.619 -17.479 17.723 Atomic orbital electron populations 1.21810 0.96877 1.01300 0.99335 1.21630 0.93215 0.95980 0.91388 0.95109 1.19264 0.95372 0.96228 0.90753 1.21156 0.92232 1.34343 1.08169 0.92940 1.24976 0.98074 0.95261 0.95780 1.69954 1.35491 1.35705 1.11977 0.86721 0.86159 0.78103 0.77398 1.20388 1.21348 1.20245 1.60531 1.35376 1.30878 1.03619 1.19880 0.97097 0.91488 0.86684 0.89454 1.22444 0.98036 1.00798 1.02006 1.22418 0.97370 0.91852 0.95661 1.21328 1.15065 1.00814 0.93012 1.22388 1.01339 0.87674 0.98979 1.48656 1.50564 1.09685 1.08086 1.21749 1.01938 0.81439 0.98568 1.77570 1.23128 1.14843 0.92974 0.93387 0.94525 0.92755 0.96099 0.95637 0.92996 0.81809 0.92336 0.91441 0.92766 0.84006 0.81595 0.91229 0.89310 0.90038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.40 37.16 0.35 -2.19 16 2 C 0.09 1.86 2.40 -67.71 -0.16 1.70 16 3 H 0.03 0.65 7.11 -51.93 -0.37 0.28 16 4 C 0.02 0.55 4.57 -27.88 -0.13 0.42 16 5 C -0.52 -14.51 8.12 -34.44 -0.28 -14.79 16 6 H 0.05 1.41 7.49 -52.48 -0.39 1.02 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.98 13.29 55.43 0.74 -26.25 16 9 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 N -0.67 -13.80 5.88 -100.96 -0.59 -14.40 16 14 C 0.16 2.79 2.88 -68.87 -0.20 2.59 16 15 H 0.09 1.41 7.11 -51.93 -0.37 1.04 16 16 C -0.17 -2.81 9.13 37.16 0.34 -2.47 16 17 C 0.10 1.62 6.19 -82.40 -0.51 1.11 16 18 C -0.27 -3.77 10.74 -40.01 -0.43 -4.20 16 19 C 0.04 0.50 11.49 -17.22 -0.20 0.31 16 20 N -0.39 -5.41 4.01 -68.16 -0.27 -5.68 16 21 C 0.10 0.97 11.47 59.85 0.69 1.65 16 22 N -0.26 -4.79 12.35 33.67 0.42 -4.38 16 23 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.04 0.61 7.43 -51.93 -0.39 0.22 16 25 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.36 8.24 6.95 -39.29 -0.27 7.96 16 30 H 0.06 1.02 8.13 -51.93 -0.42 0.60 16 31 H 0.07 1.14 7.43 -51.93 -0.39 0.75 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 34 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 309.44 15.07 4.66 4.66 Total: -1.00 -32.52 309.44 -6.66 -39.18 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -5.96 Total: 4.24 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: -0.63 Total: -14.23 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: 0.29 Total: -50.70 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.52 -6.66 -39.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514675519.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.209 kcal (2) G-P(sol) polarization free energy of solvation -32.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds