Wall clock time and date at job start Sun Mar 29 2020 21:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47201 * 2 1 4 4 C 1.53001 * 109.47359 * 119.99945 * 2 1 3 5 5 C 1.50700 * 109.47225 * 185.00076 * 4 2 1 6 6 H 1.08003 * 120.00267 * 359.97438 * 5 4 2 7 7 C 1.37882 * 120.00192 * 180.02562 * 5 4 2 8 8 N 1.31518 * 119.99622 * 359.97438 * 7 5 4 9 9 Si 1.86791 * 120.00034 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47353 * 59.99813 * 9 7 5 11 11 H 1.48501 * 109.47206 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47444 * 299.99509 * 9 7 5 13 13 N 1.46908 * 109.46974 * 239.99816 * 2 1 3 14 14 C 1.46894 * 110.99837 * 85.00191 * 13 2 1 15 15 H 1.09002 * 109.47104 * 324.99694 * 14 13 2 16 16 C 1.52997 * 109.47515 * 84.99962 * 14 13 2 17 17 C 1.50699 * 109.46922 * 205.00026 * 14 13 2 18 18 C 1.39880 * 125.89929 * 154.99723 * 17 14 13 19 19 C 1.35319 * 107.91779 * 180.02562 * 18 17 14 20 20 N 1.34945 * 107.74734 * 359.97438 * 19 18 17 21 21 C 1.46505 * 126.03519 * 180.02562 * 20 19 18 22 22 N 1.30836 * 125.89860 * 334.69208 * 17 14 13 23 23 H 1.08997 * 109.46833 * 299.99845 * 1 2 3 24 24 H 1.08994 * 109.47425 * 60.00080 * 1 2 3 25 25 H 1.09007 * 109.46875 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46895 * 304.99855 * 4 2 1 27 27 H 1.09004 * 109.47545 * 64.99782 * 4 2 1 28 28 H 0.96993 * 119.99525 * 180.02562 * 8 7 5 29 29 H 1.00903 * 110.99526 * 208.95241 * 13 2 1 30 30 H 1.09002 * 109.47153 * 59.99762 * 16 14 13 31 31 H 1.09001 * 109.46832 * 299.99953 * 16 14 13 32 32 H 1.09004 * 109.47261 * 179.97438 * 16 14 13 33 33 H 1.07998 * 126.03830 * 359.97438 * 18 17 14 34 34 H 1.07995 * 126.12025 * 180.02562 * 19 18 17 35 35 H 1.08993 * 109.47379 * 90.00298 * 21 20 19 36 36 H 1.09006 * 109.46943 * 210.00107 * 21 20 19 37 37 H 1.08994 * 109.47107 * 329.99314 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5420 -0.6149 1.3127 6 1 4.0791 -0.0861 0.5391 7 6 4.2306 -1.1935 2.3578 8 7 3.5766 -1.8378 3.2995 9 14 6.0922 -1.0622 2.4360 10 1 6.4856 0.3685 2.4956 11 1 6.5873 -1.7621 3.6485 12 1 6.6839 -1.6882 1.2264 13 7 2.0197 -0.6926 -1.1995 14 6 2.0825 0.2225 -2.3469 15 1 1.2576 0.9328 -2.2907 16 6 3.4111 0.9808 -2.3225 17 6 1.9785 -0.5678 -3.6258 18 6 1.5170 -0.0832 -4.8542 19 6 1.5770 -1.0955 -5.7501 20 7 2.0599 -2.1819 -5.1116 21 6 2.2884 -3.5009 -5.7070 22 7 2.3097 -1.8240 -3.7804 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.6055 -0.2617 2.1369 27 1 1.7517 -1.7715 1.2057 28 1 4.0610 -2.2445 4.0348 29 1 2.9173 -1.1206 -1.0287 30 1 4.2359 0.2704 -2.3787 31 1 3.4862 1.5524 -1.3974 32 1 3.4578 1.6595 -3.1742 33 1 1.1727 0.9211 -5.0522 34 1 1.2906 -1.0431 -6.7901 35 1 3.3020 -3.5495 -6.1045 36 1 2.1594 -4.2704 -4.9458 37 1 1.5735 -3.6642 -6.5134 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000514675519.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:34 Heat of formation + Delta-G solvation = 43.812035 kcal Electronic energy + Delta-G solvation = -16917.421262 eV Core-core repulsion = 14309.129977 eV Total energy + Delta-G solvation = -2608.291285 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.96272 -38.67298 -35.48698 -34.21778 -32.69431 -30.81441 -29.38181 -28.95739 -27.37500 -25.16280 -23.75981 -21.96147 -20.94032 -20.23025 -18.47715 -17.79394 -16.72164 -16.45583 -16.26264 -15.81822 -15.04791 -14.66169 -14.42081 -14.31378 -13.80589 -13.71685 -13.46758 -13.35039 -13.22473 -13.04403 -12.82240 -12.60251 -12.46727 -12.25949 -12.25195 -11.87894 -11.39023 -11.21520 -10.95007 -10.55499 -10.07363 -9.36215 -9.07446 -8.17335 -6.26821 1.13783 1.38523 1.41211 1.48488 1.84333 1.98098 2.41032 3.13902 3.43942 3.73459 4.07397 4.21135 4.26019 4.36241 4.43611 4.48437 4.61826 4.69516 4.72569 4.75983 4.87227 4.91999 5.02482 5.08093 5.21470 5.23783 5.26996 5.36829 5.52311 5.59965 5.81102 5.87607 6.23752 6.34095 6.48783 6.66526 6.87921 7.01775 7.41163 8.94444 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.025226 B = 0.006175 C = 0.005681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.685564 B = 4532.965473 C = 4927.768943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.096 3.904 3 H 0.035 0.965 4 C 0.029 3.971 5 C -0.529 4.529 6 H 0.059 0.941 7 C 0.003 3.997 8 N -0.932 5.932 9 Si 0.958 3.042 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.271 1.271 13 N -0.677 5.677 14 C 0.161 3.839 15 H 0.101 0.899 16 C -0.164 4.164 17 C 0.075 3.925 18 C -0.289 4.289 19 C 0.059 3.941 20 N -0.392 5.392 21 C 0.096 3.904 22 N -0.324 5.324 23 H 0.055 0.945 24 H 0.062 0.938 25 H 0.041 0.959 26 H -0.003 1.003 27 H -0.010 1.010 28 H 0.262 0.738 29 H 0.342 0.658 30 H 0.039 0.961 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.164 0.836 34 H 0.216 0.784 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.673 2.956 -20.429 20.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.013 4.013 3 H 0.053 0.947 4 C -0.009 4.009 5 C -0.568 4.568 6 H 0.077 0.923 7 C -0.194 4.194 8 N -0.572 5.572 9 Si 0.783 3.217 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.197 1.197 13 N -0.309 5.309 14 C 0.049 3.951 15 H 0.119 0.881 16 C -0.223 4.223 17 C -0.092 4.092 18 C -0.319 4.319 19 C -0.087 4.087 20 N -0.174 5.174 21 C -0.044 4.044 22 N -0.147 5.147 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.060 0.940 26 H 0.016 0.984 27 H 0.009 0.991 28 H 0.071 0.929 29 H 0.162 0.838 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.182 0.818 34 H 0.233 0.767 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.794 1.380 -19.946 20.350 hybrid contribution 1.408 0.868 0.493 1.726 sum -2.386 2.248 -19.453 19.727 Atomic orbital electron populations 1.21721 0.94725 1.01014 1.01026 1.21445 0.94861 0.95233 0.89773 0.94732 1.19117 0.94921 0.94439 0.92389 1.21502 0.93222 1.33917 1.08110 0.92311 1.25878 1.03196 0.94922 0.95447 1.70095 1.37509 1.36842 1.12744 0.85610 0.80014 0.78602 0.77475 1.19153 1.20976 1.19658 1.60548 1.34270 1.31965 1.04109 1.19960 0.97966 0.91333 0.85811 0.88142 1.22335 0.96845 1.00513 1.02653 1.22438 0.98398 0.91995 0.96361 1.21651 1.15702 1.02520 0.92022 1.23146 0.98756 0.86207 1.00633 1.48993 1.49926 1.11484 1.07024 1.22095 1.04003 0.79323 0.99029 1.77455 1.25296 1.15900 0.96018 0.92550 0.91908 0.94026 0.98444 0.99118 0.92932 0.83834 0.94207 0.92430 0.89994 0.81799 0.76727 0.89941 0.90542 0.86144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.72 9.40 71.98 0.68 -4.04 16 2 C 0.10 4.17 2.40 44.91 0.11 4.27 16 3 H 0.03 1.47 7.11 -2.39 -0.02 1.45 16 4 C 0.03 1.56 4.57 29.85 0.14 1.70 16 5 C -0.53 -30.23 8.12 25.60 0.21 -30.02 16 6 H 0.06 3.21 7.49 -2.91 -0.02 3.19 16 7 C 0.00 0.20 5.46 84.66 0.46 0.66 16 8 N -0.93 -57.89 13.29 21.45 0.28 -57.60 16 9 Si 0.96 45.38 29.54 68.60 2.03 47.41 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 13 N -0.68 -28.36 5.88 -473.31 -2.78 -31.14 16 14 C 0.16 5.47 2.88 44.17 0.13 5.60 16 15 H 0.10 3.08 7.11 -2.39 -0.02 3.07 16 16 C -0.16 -5.20 9.13 71.98 0.66 -4.54 16 17 C 0.07 2.47 6.19 43.10 0.27 2.74 16 18 C -0.29 -7.23 10.74 21.99 0.24 -6.99 16 19 C 0.06 1.20 11.49 83.54 0.96 2.16 16 20 N -0.39 -10.13 4.01 -369.56 -1.48 -11.61 16 21 C 0.10 1.54 11.47 127.77 1.47 3.01 16 22 N -0.32 -11.67 12.35 -47.38 -0.59 -12.25 16 23 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 24 H 0.06 1.99 7.43 -2.39 -0.02 1.97 16 25 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 26 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 27 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 28 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 29 H 0.34 16.25 6.95 -89.69 -0.62 15.63 16 30 H 0.04 1.39 8.13 -2.39 -0.02 1.37 16 31 H 0.06 1.91 7.43 -2.39 -0.02 1.89 16 32 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 33 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 34 H 0.22 2.08 8.06 -2.91 -0.02 2.05 16 35 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 37 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -72.83 309.44 3.18 -69.65 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 0.41 Total: 20.99 kcal Atomic # 6 Polarization: -30.75 SS G_CDS: 5.30 Total: -25.45 kcal Atomic # 7 Polarization: -108.04 SS G_CDS: -4.57 Total: -112.60 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -72.83 3.18 -69.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514675519.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.460 kcal (2) G-P(sol) polarization free energy of solvation -72.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds