Wall clock time and date at job start Sun Mar 29 2020 21:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.46804 * 2 1 4 4 N 1.46898 * 109.46775 * 120.00317 * 2 1 3 5 5 C 1.46904 * 110.99742 * 206.82376 * 4 2 1 6 6 H 1.09002 * 109.47375 * 322.76357 * 5 4 2 7 7 C 1.53001 * 109.47254 * 82.75711 * 5 4 2 8 8 C 1.52997 * 109.47183 * 202.75770 * 5 4 2 9 9 C 1.50707 * 109.46944 * 65.00103 * 8 5 4 10 10 H 1.08001 * 119.99973 * 359.97438 * 9 8 5 11 11 C 1.37878 * 119.99715 * 179.97438 * 9 8 5 12 12 N 1.31513 * 120.00033 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99618 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47230 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47089 * 120.00234 * 13 11 9 16 16 H 1.48502 * 109.46969 * 240.00248 * 13 11 9 17 17 C 1.50703 * 109.46978 * 239.99921 * 2 1 3 18 18 C 1.39874 * 125.89436 * 85.23982 * 17 2 1 19 19 C 1.35319 * 107.91483 * 180.14181 * 18 17 2 20 20 N 1.34946 * 107.74704 * 359.63281 * 19 18 17 21 21 C 1.46499 * 126.03791 * 180.20533 * 20 19 18 22 22 N 1.30832 * 125.90037 * 264.97415 * 17 2 1 23 23 H 1.08999 * 109.46918 * 55.33057 * 1 2 3 24 24 H 1.08998 * 109.46938 * 175.32743 * 1 2 3 25 25 H 1.08999 * 109.47592 * 295.32954 * 1 2 3 26 26 H 1.00895 * 111.00168 * 330.77511 * 4 2 1 27 27 H 1.09008 * 109.47019 * 55.15401 * 7 5 4 28 28 H 1.08997 * 109.47589 * 175.15095 * 7 5 4 29 29 H 1.08999 * 109.47300 * 295.15930 * 7 5 4 30 30 H 1.09004 * 109.46963 * 185.00019 * 8 5 4 31 31 H 1.08996 * 109.47157 * 305.00297 * 8 5 4 32 32 H 0.96997 * 119.99744 * 179.97438 * 12 11 9 33 33 H 1.07992 * 126.04462 * 0.02562 * 18 17 2 34 34 H 1.08004 * 126.12279 * 179.90594 * 19 18 17 35 35 H 1.09000 * 109.47059 * 90.00225 * 21 20 19 36 36 H 1.09001 * 109.47232 * 210.00590 * 21 20 19 37 37 H 1.09009 * 109.47288 * 330.01078 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 3.3490 -0.2008 1.5854 6 1 3.9345 0.0053 0.6894 7 6 3.2000 1.0834 2.4037 8 6 4.0608 -1.2620 2.4269 9 6 4.3173 -2.4837 1.5826 10 1 4.0036 -2.5016 0.5493 11 6 4.9524 -3.5785 2.1294 12 7 5.3339 -3.5569 3.3878 13 14 5.2710 -5.0926 1.0826 14 1 4.7491 -4.8649 -0.2889 15 1 6.7318 -5.3520 1.0191 16 1 4.5859 -6.2641 1.6853 17 6 2.0323 -0.7104 -1.2305 18 6 2.2170 -0.1348 -2.4918 19 6 2.6757 -1.0970 -3.3254 20 7 2.7854 -2.2389 -2.6147 21 6 3.2502 -3.5308 -3.1256 22 7 2.3756 -1.9709 -1.3022 23 1 -0.3633 0.5846 -0.8452 24 1 -0.3633 -1.0242 -0.0837 25 1 -0.3634 0.4396 0.9288 26 1 1.3651 -0.6018 1.9619 27 1 2.5436 0.8983 3.2540 28 1 4.1788 1.4011 2.7628 29 1 2.7712 1.8656 1.7773 30 1 5.0092 -0.8637 2.7874 31 1 3.4339 -1.5326 3.2765 32 1 5.7804 -4.3273 3.7725 33 1 2.0255 0.8950 -2.7546 34 1 2.9156 -0.9722 -4.3710 35 1 4.3308 -3.6028 -3.0021 36 1 2.7668 -4.3357 -2.5720 37 1 2.9990 -3.6151 -4.1830 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514675520.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:36 Heat of formation + Delta-G solvation = 74.857724 kcal Electronic energy + Delta-G solvation = -17400.143948 eV Core-core repulsion = 14793.198905 eV Total energy + Delta-G solvation = -2606.945043 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.68888 -37.05208 -33.74546 -32.32657 -31.31389 -29.52611 -27.65098 -27.05437 -26.27633 -22.98391 -22.41030 -20.65976 -19.54651 -18.81129 -16.56348 -16.00963 -15.03214 -14.96704 -14.46043 -14.21415 -13.86916 -13.43044 -13.06155 -12.65981 -12.48008 -12.22247 -12.16263 -12.05629 -11.63153 -11.34134 -11.25850 -11.09562 -10.80267 -10.43900 -10.27860 -9.94974 -9.85961 -9.09166 -8.81755 -8.61519 -8.12081 -8.09513 -7.42699 -5.71279 -3.64987 2.39401 2.98997 3.29541 3.45603 3.51839 3.58254 4.70918 4.76531 4.87300 5.15016 5.25057 5.43570 5.53437 5.60208 5.66604 5.69879 5.85808 5.88549 5.99464 6.00945 6.05525 6.12033 6.27406 6.39153 6.42106 6.62468 6.75172 7.11361 7.18910 7.43954 7.70038 7.85907 8.14060 8.27931 8.35725 8.41093 8.82561 9.46532 9.95055 11.41939 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.016998 B = 0.010959 C = 0.007272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.874867 B = 2554.454469 C = 3849.463456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.163 3.837 3 H 0.053 0.947 4 N -0.651 5.651 5 C 0.093 3.907 6 H 0.061 0.939 7 C -0.181 4.181 8 C 0.033 3.967 9 C -0.475 4.475 10 H 0.076 0.924 11 C 0.044 3.956 12 N -0.911 5.911 13 Si 0.886 3.114 14 H -0.274 1.274 15 H -0.292 1.292 16 H -0.289 1.289 17 C 0.078 3.922 18 C -0.276 4.276 19 C 0.037 3.963 20 N -0.386 5.386 21 C 0.105 3.895 22 N -0.222 5.222 23 H 0.058 0.942 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.334 0.666 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.037 0.963 30 H 0.014 0.986 31 H 0.015 0.985 32 H 0.252 0.748 33 H 0.138 0.862 34 H 0.163 0.837 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.607 6.976 -12.265 16.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.050 3.950 3 H 0.071 0.929 4 N -0.282 5.282 5 C -0.017 4.017 6 H 0.079 0.921 7 C -0.240 4.240 8 C -0.005 4.005 9 C -0.513 4.513 10 H 0.094 0.906 11 C -0.154 4.154 12 N -0.554 5.554 13 Si 0.716 3.284 14 H -0.198 1.198 15 H -0.219 1.219 16 H -0.216 1.216 17 C -0.091 4.091 18 C -0.307 4.307 19 C -0.109 4.109 20 N -0.168 5.168 21 C -0.037 4.037 22 N -0.043 5.043 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.153 0.847 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.032 0.968 31 H 0.033 0.967 32 H 0.062 0.938 33 H 0.156 0.844 34 H 0.181 0.819 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.097 5.056 -11.942 14.783 hybrid contribution 0.130 0.672 -0.691 0.973 sum -6.967 5.728 -12.634 15.523 Atomic orbital electron populations 1.21907 0.94299 1.02722 1.01393 1.19758 0.93637 0.93610 0.87969 0.92906 1.60376 1.03785 1.58551 1.05489 1.21784 0.89518 0.92678 0.97695 0.92058 1.22594 1.01688 0.99400 1.00316 1.19116 0.94047 0.92711 0.94588 1.21485 1.33285 0.98111 0.98464 0.90565 1.25005 0.97013 0.98526 0.94842 1.69990 1.42717 1.30076 1.12620 0.86606 0.76965 0.83815 0.81005 1.19840 1.21936 1.21607 1.22292 0.99719 0.92062 0.95017 1.21259 1.15388 1.00429 0.93599 1.22341 1.02986 0.87129 0.98411 1.48771 1.51167 1.08710 1.08121 1.21749 1.00659 0.82614 0.98682 1.77871 1.16615 1.16536 0.93282 0.92345 0.91713 0.92351 0.84692 0.93119 0.92543 0.94427 0.96811 0.96670 0.93800 0.84418 0.81925 0.91020 0.89439 0.90249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.19 37.16 0.34 -1.61 16 2 C 0.16 2.71 2.91 -68.86 -0.20 2.51 16 3 H 0.05 0.83 6.99 -51.93 -0.36 0.46 16 4 N -0.65 -12.84 5.59 -100.95 -0.56 -13.40 16 5 C 0.09 1.98 2.35 -67.71 -0.16 1.82 16 6 H 0.06 1.41 7.73 -51.93 -0.40 1.01 16 7 C -0.18 -3.15 9.15 37.16 0.34 -2.81 16 8 C 0.03 0.87 4.65 -27.88 -0.13 0.74 16 9 C -0.47 -14.01 8.84 -34.44 -0.30 -14.31 16 10 H 0.08 2.26 6.76 -52.49 -0.36 1.90 16 11 C 0.04 1.32 5.46 -17.82 -0.10 1.22 16 12 N -0.91 -28.80 13.29 55.43 0.74 -28.07 16 13 Si 0.89 23.19 29.54 -169.99 -5.02 18.17 16 14 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 15 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 16 H -0.29 -7.56 7.11 56.52 0.40 -7.15 16 17 C 0.08 1.44 5.93 -82.40 -0.49 0.95 16 18 C -0.28 -4.26 10.74 -40.01 -0.43 -4.69 16 19 C 0.04 0.53 11.49 -17.22 -0.20 0.33 16 20 N -0.39 -6.61 4.01 -68.16 -0.27 -6.88 16 21 C 0.10 1.41 11.47 59.85 0.69 2.10 16 22 N -0.22 -4.67 11.39 33.67 0.38 -4.28 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.06 0.68 8.03 -51.93 -0.42 0.27 16 26 H 0.33 6.05 7.98 -39.29 -0.31 5.74 16 27 H 0.05 0.84 8.06 -51.92 -0.42 0.42 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.04 0.57 7.36 -51.93 -0.38 0.18 16 30 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.01 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 33 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 34 H 0.16 1.62 8.06 -52.48 -0.42 1.19 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 LS Contribution 309.80 15.07 4.67 4.67 Total: -1.00 -34.93 309.80 -6.72 -41.65 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -6.01 Total: 1.90 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -0.64 Total: -13.76 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: 0.28 Total: -52.63 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.02 Total: 18.17 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.93 -6.72 -41.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514675520.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.509 kcal (2) G-P(sol) polarization free energy of solvation -34.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds