Wall clock time and date at job start Sun Mar 29 2020 21:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.46804 * 2 1 4 4 N 1.46898 * 109.46775 * 120.00317 * 2 1 3 5 5 C 1.46904 * 110.99742 * 206.82376 * 4 2 1 6 6 H 1.09002 * 109.47375 * 322.76357 * 5 4 2 7 7 C 1.53001 * 109.47254 * 82.75711 * 5 4 2 8 8 C 1.52997 * 109.47183 * 202.75770 * 5 4 2 9 9 C 1.50707 * 109.46944 * 65.00103 * 8 5 4 10 10 H 1.08001 * 119.99973 * 359.97438 * 9 8 5 11 11 C 1.37878 * 119.99715 * 179.97438 * 9 8 5 12 12 N 1.31513 * 120.00033 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99618 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47230 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47089 * 120.00234 * 13 11 9 16 16 H 1.48502 * 109.46969 * 240.00248 * 13 11 9 17 17 C 1.50703 * 109.46978 * 239.99921 * 2 1 3 18 18 C 1.39874 * 125.89436 * 85.23982 * 17 2 1 19 19 C 1.35319 * 107.91483 * 180.14181 * 18 17 2 20 20 N 1.34946 * 107.74704 * 359.63281 * 19 18 17 21 21 C 1.46499 * 126.03791 * 180.20533 * 20 19 18 22 22 N 1.30832 * 125.90037 * 264.97415 * 17 2 1 23 23 H 1.08999 * 109.46918 * 55.33057 * 1 2 3 24 24 H 1.08998 * 109.46938 * 175.32743 * 1 2 3 25 25 H 1.08999 * 109.47592 * 295.32954 * 1 2 3 26 26 H 1.00895 * 111.00168 * 330.77511 * 4 2 1 27 27 H 1.09008 * 109.47019 * 55.15401 * 7 5 4 28 28 H 1.08997 * 109.47589 * 175.15095 * 7 5 4 29 29 H 1.08999 * 109.47300 * 295.15930 * 7 5 4 30 30 H 1.09004 * 109.46963 * 185.00019 * 8 5 4 31 31 H 1.08996 * 109.47157 * 305.00297 * 8 5 4 32 32 H 0.96997 * 119.99744 * 179.97438 * 12 11 9 33 33 H 1.07992 * 126.04462 * 0.02562 * 18 17 2 34 34 H 1.08004 * 126.12279 * 179.90594 * 19 18 17 35 35 H 1.09000 * 109.47059 * 90.00225 * 21 20 19 36 36 H 1.09001 * 109.47232 * 210.00590 * 21 20 19 37 37 H 1.09009 * 109.47288 * 330.01078 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 3.3490 -0.2008 1.5854 6 1 3.9345 0.0053 0.6894 7 6 3.2000 1.0834 2.4037 8 6 4.0608 -1.2620 2.4269 9 6 4.3173 -2.4837 1.5826 10 1 4.0036 -2.5016 0.5493 11 6 4.9524 -3.5785 2.1294 12 7 5.3339 -3.5569 3.3878 13 14 5.2710 -5.0926 1.0826 14 1 4.7491 -4.8649 -0.2889 15 1 6.7318 -5.3520 1.0191 16 1 4.5859 -6.2641 1.6853 17 6 2.0323 -0.7104 -1.2305 18 6 2.2170 -0.1348 -2.4918 19 6 2.6757 -1.0970 -3.3254 20 7 2.7854 -2.2389 -2.6147 21 6 3.2502 -3.5308 -3.1256 22 7 2.3756 -1.9709 -1.3022 23 1 -0.3633 0.5846 -0.8452 24 1 -0.3633 -1.0242 -0.0837 25 1 -0.3634 0.4396 0.9288 26 1 1.3651 -0.6018 1.9619 27 1 2.5436 0.8983 3.2540 28 1 4.1788 1.4011 2.7628 29 1 2.7712 1.8656 1.7773 30 1 5.0092 -0.8637 2.7874 31 1 3.4339 -1.5326 3.2765 32 1 5.7804 -4.3273 3.7725 33 1 2.0255 0.8950 -2.7546 34 1 2.9156 -0.9722 -4.3710 35 1 4.3308 -3.6028 -3.0021 36 1 2.7668 -4.3357 -2.5720 37 1 2.9990 -3.6151 -4.1830 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000514675520.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:36 Heat of formation + Delta-G solvation = 50.296336 kcal Electronic energy + Delta-G solvation = -17401.209010 eV Core-core repulsion = 14793.198905 eV Total energy + Delta-G solvation = -2608.010105 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.89433 -38.57470 -35.41176 -34.15962 -32.75827 -30.73832 -29.43510 -28.70080 -27.38569 -25.01551 -23.73711 -21.81262 -21.32245 -20.09154 -18.28101 -17.70109 -16.55754 -16.42902 -16.20428 -15.57158 -15.40016 -14.58388 -14.44070 -14.17228 -14.01144 -13.64112 -13.42400 -13.31332 -13.21557 -13.18987 -12.71316 -12.47759 -12.38909 -12.29351 -12.16401 -11.80175 -11.26029 -11.05510 -10.89455 -10.45071 -9.97507 -9.29639 -8.92443 -8.04402 -6.04866 1.23683 1.34534 1.36917 1.50886 1.89778 2.07399 2.49877 3.26410 3.42577 3.80430 4.10547 4.21619 4.27846 4.37097 4.40616 4.42690 4.55410 4.60187 4.66715 4.83144 4.90830 4.96312 5.02042 5.08960 5.25271 5.27106 5.32221 5.39912 5.56564 5.76297 5.90443 5.99361 6.37705 6.42586 6.59028 6.85392 7.13893 7.16387 7.59306 9.08797 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.016998 B = 0.010959 C = 0.007272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.874867 B = 2554.454469 C = 3849.463456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.162 3.838 3 H 0.068 0.932 4 N -0.672 5.672 5 C 0.109 3.891 6 H 0.042 0.958 7 C -0.170 4.170 8 C 0.037 3.963 9 C -0.483 4.483 10 H 0.074 0.926 11 C -0.015 4.015 12 N -0.948 5.948 13 Si 0.951 3.049 14 H -0.264 1.264 15 H -0.285 1.285 16 H -0.287 1.287 17 C 0.063 3.937 18 C -0.291 4.291 19 C 0.050 3.950 20 N -0.399 5.399 21 C 0.098 3.902 22 N -0.295 5.295 23 H 0.081 0.919 24 H 0.044 0.956 25 H 0.077 0.923 26 H 0.340 0.660 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.069 0.931 30 H -0.014 1.014 31 H -0.011 1.011 32 H 0.254 0.746 33 H 0.165 0.835 34 H 0.211 0.789 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.454 7.985 -14.626 18.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.050 3.950 3 H 0.086 0.914 4 N -0.303 5.303 5 C -0.001 4.001 6 H 0.061 0.939 7 C -0.229 4.229 8 C 0.000 4.000 9 C -0.522 4.522 10 H 0.092 0.908 11 C -0.209 4.209 12 N -0.592 5.592 13 Si 0.778 3.222 14 H -0.189 1.189 15 H -0.211 1.211 16 H -0.213 1.213 17 C -0.105 4.105 18 C -0.320 4.320 19 C -0.095 4.095 20 N -0.181 5.181 21 C -0.043 4.043 22 N -0.117 5.117 23 H 0.100 0.900 24 H 0.063 0.937 25 H 0.095 0.905 26 H 0.160 0.840 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.004 0.996 31 H 0.008 0.992 32 H 0.062 0.938 33 H 0.183 0.817 34 H 0.228 0.772 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.956 6.073 -14.314 17.466 hybrid contribution 0.390 0.368 -0.009 0.536 sum -7.566 6.441 -14.323 17.432 Atomic orbital electron populations 1.21833 0.91906 1.02079 1.03428 1.19931 0.95509 0.93627 0.85948 0.91428 1.60155 1.03169 1.60151 1.06870 1.21340 0.89934 0.92562 0.96272 0.93926 1.22438 1.01975 0.98010 1.00439 1.19008 0.92948 0.93801 0.94272 1.21825 1.32585 0.99129 0.98622 0.90805 1.25850 0.97094 1.01824 0.96097 1.70122 1.43715 1.31041 1.14279 0.85585 0.77065 0.79856 0.79669 1.18863 1.21102 1.21289 1.22720 0.99338 0.91890 0.96585 1.21645 1.15779 1.02039 0.92576 1.23108 1.00613 0.85702 1.00114 1.49033 1.51238 1.10399 1.07460 1.21992 1.00019 0.81136 1.01149 1.77737 1.19510 1.18331 0.96117 0.90031 0.93712 0.90459 0.83996 0.92385 0.92964 0.91227 0.99555 0.99220 0.93752 0.81720 0.77235 0.91677 0.91037 0.85428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.33 9.19 71.98 0.66 -2.67 16 2 C 0.16 5.14 2.91 44.17 0.13 5.27 16 3 H 0.07 1.94 6.99 -2.39 -0.02 1.92 16 4 N -0.67 -26.39 5.59 -473.30 -2.65 -29.03 16 5 C 0.11 4.68 2.35 44.91 0.11 4.78 16 6 H 0.04 1.98 7.73 -2.39 -0.02 1.96 16 7 C -0.17 -5.71 9.15 71.98 0.66 -5.05 16 8 C 0.04 2.06 4.65 29.85 0.14 2.20 16 9 C -0.48 -29.31 8.84 25.60 0.23 -29.08 16 10 H 0.07 4.49 6.76 -2.91 -0.02 4.47 16 11 C -0.01 -0.90 5.46 84.66 0.46 -0.44 16 12 N -0.95 -61.50 13.29 21.45 0.28 -61.21 16 13 Si 0.95 48.62 29.54 68.60 2.03 50.65 16 14 H -0.26 -12.97 7.11 99.48 0.71 -12.26 16 15 H -0.28 -14.10 7.11 99.48 0.71 -13.40 16 16 H -0.29 -14.42 7.11 99.48 0.71 -13.72 16 17 C 0.06 2.24 5.93 43.10 0.26 2.50 16 18 C -0.29 -8.20 10.74 21.99 0.24 -7.97 16 19 C 0.05 1.28 11.49 83.54 0.96 2.24 16 20 N -0.40 -13.09 4.01 -369.55 -1.48 -14.57 16 21 C 0.10 2.48 11.47 127.77 1.47 3.95 16 22 N -0.30 -12.36 11.39 -47.38 -0.54 -12.90 16 23 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.08 1.61 8.03 -2.39 -0.02 1.59 16 26 H 0.34 12.23 7.98 -89.70 -0.72 11.51 16 27 H 0.06 1.86 8.06 -2.38 -0.02 1.84 16 28 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.07 1.90 7.36 -2.39 -0.02 1.89 16 30 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 31 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 32 H 0.25 15.61 8.31 -92.71 -0.77 14.84 16 33 H 0.17 3.55 8.06 -2.91 -0.02 3.53 16 34 H 0.21 3.11 8.06 -2.91 -0.02 3.09 16 35 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.13 1.89 8.14 -2.38 -0.02 1.87 16 Total: -1.00 -78.65 309.80 3.26 -75.39 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.32 Total: 15.95 kcal Atomic # 6 Polarization: -29.57 SS G_CDS: 5.30 Total: -24.27 kcal Atomic # 7 Polarization: -113.33 SS G_CDS: -4.38 Total: -117.71 kcal Atomic # 14 Polarization: 48.62 SS G_CDS: 2.03 Total: 50.65 kcal Total: -78.65 3.26 -75.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514675520.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.685 kcal (2) G-P(sol) polarization free energy of solvation -78.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds