Wall clock time and date at job start Sun Mar 29 2020 21:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47244 * 2 1 4 4 C 1.53006 * 109.47450 * 240.00522 * 2 1 3 5 5 C 1.50696 * 109.47185 * 174.99793 * 4 2 1 6 6 H 1.07995 * 120.00395 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99681 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99855 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99793 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47101 * 60.00166 * 9 7 5 11 11 H 1.48503 * 109.47011 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46988 * 299.99999 * 9 7 5 13 13 N 1.46898 * 109.47436 * 119.99966 * 2 1 3 14 14 C 1.46898 * 111.00013 * 274.03379 * 13 2 1 15 15 H 1.08995 * 109.47302 * 347.10530 * 14 13 2 16 16 C 1.52992 * 109.47196 * 107.10965 * 14 13 2 17 17 C 1.50708 * 109.46574 * 227.10463 * 14 13 2 18 18 C 1.39868 * 125.89529 * 155.00188 * 17 14 13 19 19 C 1.35317 * 107.91925 * 180.02562 * 18 17 14 20 20 N 1.34946 * 107.74634 * 359.97438 * 19 18 17 21 21 C 1.46502 * 126.03551 * 180.02562 * 20 19 18 22 22 N 1.30837 * 125.90209 * 334.69159 * 17 14 13 23 23 H 1.08993 * 109.47501 * 302.39083 * 1 2 3 24 24 H 1.09000 * 109.47071 * 182.39277 * 1 2 3 25 25 H 1.09004 * 109.47396 * 62.39757 * 1 2 3 26 26 H 1.09003 * 109.46641 * 295.00013 * 4 2 1 27 27 H 1.09001 * 109.46721 * 54.99291 * 4 2 1 28 28 H 0.97006 * 119.99613 * 180.02562 * 8 7 5 29 29 H 1.00903 * 110.99437 * 37.98703 * 13 2 1 30 30 H 1.09001 * 109.47154 * 305.56955 * 16 14 13 31 31 H 1.09003 * 109.47563 * 65.57493 * 16 14 13 32 32 H 1.09004 * 109.47013 * 185.57603 * 16 14 13 33 33 H 1.08005 * 126.04238 * 359.97438 * 18 17 14 34 34 H 1.08000 * 126.12436 * 179.97438 * 19 18 17 35 35 H 1.08997 * 109.47187 * 90.00140 * 21 20 19 36 36 H 1.09002 * 109.46610 * 210.00161 * 21 20 19 37 37 H 1.09002 * 109.46828 * 329.99343 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5419 -0.6147 -1.3128 6 1 4.0790 -0.0861 -0.5392 7 6 4.2304 -1.1933 -2.3579 8 7 3.5764 -1.8375 -3.2996 9 14 6.0922 -1.0620 -2.4362 10 1 6.6839 -1.6880 -1.2266 11 1 6.5872 -1.7618 -3.6488 12 1 6.4854 0.3687 -2.4958 13 7 2.0197 -0.6925 1.1994 14 6 2.1042 0.2280 2.3411 15 1 2.0052 1.2545 1.9883 16 6 0.9793 -0.0820 3.3305 17 6 3.4361 0.0582 3.0255 18 6 4.0918 1.0248 3.7951 19 6 5.2550 0.4897 4.2328 20 7 5.3324 -0.7710 3.7576 21 6 6.4292 -1.7140 3.9904 22 7 4.1762 -1.0206 3.0072 23 1 -0.3634 0.5505 0.8677 24 1 -0.3633 -1.0268 0.0429 25 1 -0.3634 0.4762 -0.9107 26 1 1.7517 -1.7714 -1.2057 27 1 1.6053 -0.2616 -2.1370 28 1 4.0609 -2.2448 -4.0347 29 1 1.4402 -1.4888 1.4190 30 1 0.0212 -0.0560 2.8112 31 1 1.1341 -1.0726 3.7581 32 1 0.9809 0.6620 4.1272 33 1 3.7334 2.0223 4.0026 34 1 5.9898 0.9832 4.8516 35 1 6.2244 -2.2945 4.8899 36 1 6.5179 -2.3858 3.1366 37 1 7.3611 -1.1631 4.1175 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514675521.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:38 Heat of formation + Delta-G solvation = 73.342879 kcal Electronic energy + Delta-G solvation = -17095.974628 eV Core-core repulsion = 14488.963897 eV Total energy + Delta-G solvation = -2607.010732 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.75096 -37.16383 -33.81627 -32.41832 -31.24434 -29.59788 -27.66903 -27.16690 -26.31033 -22.96456 -22.51077 -20.79082 -19.63034 -18.94163 -16.67218 -16.07599 -15.16031 -14.80751 -14.62512 -14.15863 -13.83659 -13.47178 -13.03859 -12.73571 -12.64657 -12.35207 -12.21370 -11.98384 -11.74104 -11.51922 -11.29379 -11.09521 -10.78443 -10.50842 -10.31395 -10.01878 -9.93514 -9.13963 -8.87703 -8.76349 -8.19169 -8.13724 -7.42784 -5.76470 -3.71893 2.29959 2.89510 3.23894 3.47097 3.49514 3.54802 4.66614 4.74897 4.79602 5.11128 5.22301 5.26791 5.49605 5.52013 5.56827 5.61073 5.78347 5.84495 5.90845 5.97487 6.07939 6.12491 6.25642 6.31956 6.37840 6.54533 6.73551 7.06059 7.15684 7.35807 7.68215 7.81565 8.12412 8.20521 8.30937 8.33123 8.74205 9.33131 9.88166 11.36022 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.016650 B = 0.009428 C = 0.006454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.300271 B = 2969.293303 C = 4337.482389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.090 3.910 3 H 0.064 0.936 4 C 0.034 3.966 5 C -0.478 4.478 6 H 0.056 0.944 7 C 0.049 3.951 8 N -0.907 5.907 9 Si 0.888 3.112 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.281 1.281 13 N -0.651 5.651 14 C 0.162 3.838 15 H 0.083 0.917 16 C -0.167 4.167 17 C 0.091 3.909 18 C -0.274 4.274 19 C 0.039 3.961 20 N -0.388 5.388 21 C 0.105 3.895 22 N -0.248 5.248 23 H 0.039 0.961 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.017 0.983 27 H 0.016 0.984 28 H 0.256 0.744 29 H 0.336 0.664 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.140 0.860 34 H 0.165 0.835 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.167 4.297 16.229 16.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.020 4.020 3 H 0.082 0.918 4 C -0.004 4.004 5 C -0.516 4.516 6 H 0.074 0.926 7 C -0.150 4.150 8 N -0.549 5.549 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.207 1.207 13 N -0.280 5.280 14 C 0.049 3.951 15 H 0.101 0.899 16 C -0.226 4.226 17 C -0.078 4.078 18 C -0.304 4.304 19 C -0.106 4.106 20 N -0.170 5.170 21 C -0.037 4.037 22 N -0.069 5.069 23 H 0.058 0.942 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.035 0.965 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.155 0.845 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.158 0.842 34 H 0.182 0.818 35 H 0.086 0.914 36 H 0.108 0.892 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.799 2.952 15.490 15.789 hybrid contribution 0.310 0.973 0.465 1.122 sum 1.109 3.925 15.956 16.469 Atomic orbital electron populations 1.22642 0.99569 1.01072 1.00712 1.21929 0.89790 0.97887 0.92349 0.91812 1.19104 0.96164 0.95419 0.89677 1.21101 0.91931 1.32284 1.06314 0.92563 1.24970 0.97668 0.96154 0.96191 1.69956 1.35026 1.37395 1.12494 0.86724 0.86974 0.77775 0.76830 1.20627 1.21728 1.20733 1.60316 1.57473 1.08357 1.01888 1.19898 0.87436 0.97410 0.90335 0.89940 1.22414 0.98223 1.02169 0.99808 1.22389 0.97090 0.91365 0.96947 1.21296 0.97779 1.01926 1.09416 1.22357 0.99675 0.87106 1.01460 1.48677 1.17411 1.10850 1.40047 1.21739 0.86277 0.92768 1.02916 1.77628 0.93618 1.22955 1.12707 0.94230 0.93069 0.92567 0.96515 0.96573 0.93474 0.84537 0.92035 0.92292 0.92361 0.84212 0.81784 0.91358 0.89234 0.90130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.05 9.10 37.15 0.34 -2.72 16 2 C 0.09 1.86 2.47 -67.71 -0.17 1.70 16 3 H 0.06 1.35 7.35 -51.93 -0.38 0.97 16 4 C 0.03 0.89 4.65 -27.88 -0.13 0.76 16 5 C -0.48 -14.16 8.84 -34.44 -0.30 -14.46 16 6 H 0.06 1.70 7.74 -52.49 -0.41 1.30 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 8 N -0.91 -28.51 13.29 55.43 0.74 -27.78 16 9 Si 0.89 23.35 29.54 -169.99 -5.02 18.33 16 10 H -0.28 -7.38 7.11 56.52 0.40 -6.98 16 11 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 12 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 13 N -0.65 -12.92 5.67 -100.96 -0.57 -13.49 16 14 C 0.16 2.71 3.15 -68.87 -0.22 2.49 16 15 H 0.08 1.34 7.15 -51.93 -0.37 0.97 16 16 C -0.17 -2.21 9.04 37.15 0.34 -1.87 16 17 C 0.09 1.64 6.19 -82.40 -0.51 1.13 16 18 C -0.27 -4.16 10.74 -40.01 -0.43 -4.59 16 19 C 0.04 0.54 11.49 -17.22 -0.20 0.35 16 20 N -0.39 -6.17 4.01 -68.16 -0.27 -6.45 16 21 C 0.10 1.20 11.47 59.85 0.69 1.88 16 22 N -0.25 -4.92 12.35 33.67 0.42 -4.50 16 23 H 0.04 0.57 6.93 -51.93 -0.36 0.21 16 24 H 0.05 0.85 8.09 -51.93 -0.42 0.43 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 29 H 0.34 6.33 7.88 -39.29 -0.31 6.02 16 30 H 0.06 0.75 6.85 -51.93 -0.36 0.40 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.14 1.75 8.06 -52.48 -0.42 1.33 16 34 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 310.32 15.07 4.68 4.68 Total: -1.00 -34.97 310.32 -6.70 -41.67 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -5.97 Total: 1.50 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -0.69 Total: -13.96 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: 0.31 Total: -52.22 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -5.02 Total: 18.33 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -34.97 -6.70 -41.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514675521.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.011 kcal (2) G-P(sol) polarization free energy of solvation -34.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds