Wall clock time and date at job start Sun Mar 29 2020 21:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47244 * 2 1 4 4 C 1.53006 * 109.47450 * 240.00522 * 2 1 3 5 5 C 1.50696 * 109.47185 * 174.99793 * 4 2 1 6 6 H 1.07995 * 120.00395 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99681 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99855 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99793 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47101 * 60.00166 * 9 7 5 11 11 H 1.48503 * 109.47011 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46988 * 299.99999 * 9 7 5 13 13 N 1.46898 * 109.47436 * 119.99966 * 2 1 3 14 14 C 1.46898 * 111.00013 * 274.03379 * 13 2 1 15 15 H 1.08995 * 109.47302 * 347.10530 * 14 13 2 16 16 C 1.52992 * 109.47196 * 107.10965 * 14 13 2 17 17 C 1.50708 * 109.46574 * 227.10463 * 14 13 2 18 18 C 1.39868 * 125.89529 * 155.00188 * 17 14 13 19 19 C 1.35317 * 107.91925 * 180.02562 * 18 17 14 20 20 N 1.34946 * 107.74634 * 359.97438 * 19 18 17 21 21 C 1.46502 * 126.03551 * 180.02562 * 20 19 18 22 22 N 1.30837 * 125.90209 * 334.69159 * 17 14 13 23 23 H 1.08993 * 109.47501 * 302.39083 * 1 2 3 24 24 H 1.09000 * 109.47071 * 182.39277 * 1 2 3 25 25 H 1.09004 * 109.47396 * 62.39757 * 1 2 3 26 26 H 1.09003 * 109.46641 * 295.00013 * 4 2 1 27 27 H 1.09001 * 109.46721 * 54.99291 * 4 2 1 28 28 H 0.97006 * 119.99613 * 180.02562 * 8 7 5 29 29 H 1.00903 * 110.99437 * 37.98703 * 13 2 1 30 30 H 1.09001 * 109.47154 * 305.56955 * 16 14 13 31 31 H 1.09003 * 109.47563 * 65.57493 * 16 14 13 32 32 H 1.09004 * 109.47013 * 185.57603 * 16 14 13 33 33 H 1.08005 * 126.04238 * 359.97438 * 18 17 14 34 34 H 1.08000 * 126.12436 * 179.97438 * 19 18 17 35 35 H 1.08997 * 109.47187 * 90.00140 * 21 20 19 36 36 H 1.09002 * 109.46610 * 210.00161 * 21 20 19 37 37 H 1.09002 * 109.46828 * 329.99343 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5419 -0.6147 -1.3128 6 1 4.0790 -0.0861 -0.5392 7 6 4.2304 -1.1933 -2.3579 8 7 3.5764 -1.8375 -3.2996 9 14 6.0922 -1.0620 -2.4362 10 1 6.6839 -1.6880 -1.2266 11 1 6.5872 -1.7618 -3.6488 12 1 6.4854 0.3687 -2.4958 13 7 2.0197 -0.6925 1.1994 14 6 2.1042 0.2280 2.3411 15 1 2.0052 1.2545 1.9883 16 6 0.9793 -0.0820 3.3305 17 6 3.4361 0.0582 3.0255 18 6 4.0918 1.0248 3.7951 19 6 5.2550 0.4897 4.2328 20 7 5.3324 -0.7710 3.7576 21 6 6.4292 -1.7140 3.9904 22 7 4.1762 -1.0206 3.0072 23 1 -0.3634 0.5505 0.8677 24 1 -0.3633 -1.0268 0.0429 25 1 -0.3634 0.4762 -0.9107 26 1 1.7517 -1.7714 -1.2057 27 1 1.6053 -0.2616 -2.1370 28 1 4.0609 -2.2448 -4.0347 29 1 1.4402 -1.4888 1.4190 30 1 0.0212 -0.0560 2.8112 31 1 1.1341 -1.0726 3.7581 32 1 0.9809 0.6620 4.1272 33 1 3.7334 2.0223 4.0026 34 1 5.9898 0.9832 4.8516 35 1 6.2244 -2.2945 4.8899 36 1 6.5179 -2.3858 3.1366 37 1 7.3611 -1.1631 4.1175 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000514675521.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:38 Heat of formation + Delta-G solvation = 48.799312 kcal Electronic energy + Delta-G solvation = -17097.038917 eV Core-core repulsion = 14488.963897 eV Total energy + Delta-G solvation = -2608.075021 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.90838 -38.66530 -35.45870 -34.22164 -32.66799 -30.76738 -29.37036 -28.84025 -27.35319 -25.00524 -23.78439 -21.97397 -21.27010 -20.21461 -18.37888 -17.74709 -16.61397 -16.27237 -16.22820 -15.75361 -15.12458 -14.53737 -14.46004 -14.23708 -13.98225 -13.61270 -13.57382 -13.36467 -13.22232 -13.15505 -12.73660 -12.65631 -12.46552 -12.34577 -12.08082 -11.86403 -11.29017 -11.10117 -11.00054 -10.48757 -10.00325 -9.31552 -8.92357 -8.09800 -6.12512 1.18786 1.33610 1.37618 1.45365 1.88090 2.03867 2.44989 3.21426 3.41380 3.78032 4.10118 4.20527 4.24781 4.36138 4.41811 4.46239 4.52764 4.62808 4.68391 4.77518 4.90201 4.96075 5.01744 5.10906 5.21204 5.24699 5.32168 5.36427 5.53000 5.72048 5.87756 5.91411 6.35623 6.38301 6.55541 6.80775 7.00410 7.09331 7.51448 9.02311 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.016650 B = 0.009428 C = 0.006454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.300271 B = 2969.293303 C = 4337.482389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.102 3.898 3 H 0.058 0.942 4 C 0.038 3.962 5 C -0.488 4.488 6 H 0.045 0.955 7 C -0.007 4.007 8 N -0.940 5.940 9 Si 0.953 3.047 10 H -0.281 1.281 11 H -0.282 1.282 12 H -0.270 1.270 13 N -0.673 5.673 14 C 0.162 3.838 15 H 0.086 0.914 16 C -0.153 4.153 17 C 0.071 3.929 18 C -0.293 4.293 19 C 0.052 3.948 20 N -0.397 5.397 21 C 0.097 3.903 22 N -0.313 5.313 23 H 0.072 0.928 24 H 0.051 0.949 25 H 0.055 0.945 26 H -0.012 1.012 27 H -0.006 1.006 28 H 0.258 0.742 29 H 0.337 0.663 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.079 0.921 33 H 0.163 0.837 34 H 0.212 0.788 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.661 5.639 18.204 19.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.008 4.008 3 H 0.076 0.924 4 C 0.001 3.999 5 C -0.526 4.526 6 H 0.063 0.937 7 C -0.202 4.202 8 N -0.583 5.583 9 Si 0.779 3.221 10 H -0.207 1.207 11 H -0.207 1.207 12 H -0.196 1.196 13 N -0.304 5.304 14 C 0.050 3.950 15 H 0.104 0.896 16 C -0.212 4.212 17 C -0.097 4.097 18 C -0.323 4.323 19 C -0.093 4.093 20 N -0.179 5.179 21 C -0.044 4.044 22 N -0.135 5.135 23 H 0.091 0.909 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.006 0.994 27 H 0.012 0.988 28 H 0.067 0.933 29 H 0.156 0.844 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.181 0.819 34 H 0.229 0.771 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.623 4.298 17.477 18.071 hybrid contribution 0.110 0.544 -0.100 0.564 sum 1.734 4.842 17.377 18.123 Atomic orbital electron populations 1.22478 0.96256 1.01781 1.02243 1.21569 0.92359 0.96395 0.90450 0.92376 1.19000 0.94790 0.94147 0.91997 1.21359 0.93596 1.31841 1.05818 0.93688 1.25801 1.02539 0.95941 0.95958 1.70078 1.36861 1.38238 1.13091 0.85691 0.81225 0.78263 0.76890 1.20716 1.20710 1.19573 1.60103 1.58054 1.09364 1.02846 1.19991 0.88561 0.96618 0.89859 0.89645 1.22274 0.97232 1.02201 0.99524 1.22736 0.97499 0.91971 0.97488 1.21664 0.98341 1.02687 1.09610 1.23107 0.99903 0.86067 1.00271 1.49012 1.17141 1.12263 1.39533 1.22044 0.86611 0.92814 1.02906 1.77508 0.95813 1.24785 1.15407 0.90889 0.92953 0.92602 0.99398 0.98780 0.93323 0.84380 0.90768 0.93244 0.90253 0.81925 0.77110 0.89258 0.91298 0.86653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.51 9.10 71.98 0.65 -4.85 16 2 C 0.10 4.27 2.47 44.92 0.11 4.38 16 3 H 0.06 2.48 7.35 -2.39 -0.02 2.46 16 4 C 0.04 2.10 4.65 29.85 0.14 2.23 16 5 C -0.49 -29.66 8.84 25.60 0.23 -29.43 16 6 H 0.04 2.79 7.74 -2.91 -0.02 2.77 16 7 C -0.01 -0.43 5.46 84.66 0.46 0.03 16 8 N -0.94 -60.38 13.29 21.45 0.28 -60.10 16 9 Si 0.95 48.56 29.54 68.60 2.03 50.58 16 10 H -0.28 -14.28 7.11 99.48 0.71 -13.57 16 11 H -0.28 -13.82 7.11 99.48 0.71 -13.12 16 12 H -0.27 -13.22 7.11 99.48 0.71 -12.51 16 13 N -0.67 -26.97 5.67 -473.32 -2.68 -29.66 16 14 C 0.16 5.27 3.15 44.17 0.14 5.41 16 15 H 0.09 2.67 7.15 -2.39 -0.02 2.66 16 16 C -0.15 -3.77 9.04 71.98 0.65 -3.12 16 17 C 0.07 2.51 6.19 43.10 0.27 2.78 16 18 C -0.29 -8.31 10.74 21.99 0.24 -8.07 16 19 C 0.05 1.29 11.49 83.54 0.96 2.25 16 20 N -0.40 -12.07 4.01 -369.56 -1.48 -13.55 16 21 C 0.10 2.04 11.47 127.77 1.47 3.50 16 22 N -0.31 -12.42 12.35 -47.38 -0.59 -13.01 16 23 H 0.07 1.90 6.93 -2.39 -0.02 1.89 16 24 H 0.05 1.69 8.09 -2.39 -0.02 1.67 16 25 H 0.05 1.81 8.14 -2.39 -0.02 1.80 16 26 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 27 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 28 H 0.26 15.70 8.31 -92.70 -0.77 14.93 16 29 H 0.34 12.92 7.88 -89.69 -0.71 12.21 16 30 H 0.07 1.62 6.85 -2.39 -0.02 1.60 16 31 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 33 H 0.16 3.63 8.06 -2.91 -0.02 3.60 16 34 H 0.21 2.95 8.06 -2.91 -0.02 2.93 16 35 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.12 1.57 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -78.05 310.32 3.20 -74.84 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.33 Total: 15.77 kcal Atomic # 6 Polarization: -30.20 SS G_CDS: 5.31 Total: -24.88 kcal Atomic # 7 Polarization: -111.85 SS G_CDS: -4.47 Total: -116.31 kcal Atomic # 14 Polarization: 48.56 SS G_CDS: 2.03 Total: 50.58 kcal Total: -78.05 3.20 -74.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514675521.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.642 kcal (2) G-P(sol) polarization free energy of solvation -78.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds