Wall clock time and date at job start Sun Mar 29 2020 21:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47528 * 2 1 4 4 C 1.53005 * 109.46944 * 239.99881 * 2 1 3 5 5 C 1.50706 * 109.46989 * 65.19810 * 4 2 1 6 6 H 1.08000 * 119.99673 * 357.45100 * 5 4 2 7 7 C 1.37873 * 119.99665 * 177.44990 * 5 4 2 8 8 N 1.31508 * 120.00495 * 359.72597 * 7 5 4 9 9 Si 1.86805 * 119.99514 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46934 * 179.73072 * 9 7 5 11 11 H 1.48503 * 109.47074 * 299.72500 * 9 7 5 12 12 H 1.48490 * 109.47316 * 59.72832 * 9 7 5 13 13 N 1.46905 * 109.47363 * 120.00138 * 2 1 3 14 14 C 1.46903 * 110.99876 * 172.42826 * 13 2 1 15 15 C 1.46900 * 110.99793 * 296.38273 * 13 2 1 16 16 C 1.50695 * 109.46968 * 169.99724 * 15 13 2 17 17 N 1.30495 * 125.65195 * 269.69480 * 16 15 13 18 18 C 1.34132 * 109.25914 * 179.89414 * 17 16 15 19 19 C 1.34673 * 108.01693 * 0.37059 * 18 17 16 20 20 N 1.35050 * 125.65046 * 90.00173 * 16 15 13 21 21 C 1.46501 * 126.39440 * 359.93839 * 20 16 15 22 22 H 1.08996 * 109.47045 * 299.99887 * 1 2 3 23 23 H 1.08997 * 109.47292 * 60.00003 * 1 2 3 24 24 H 1.09002 * 109.47025 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47275 * 305.19191 * 4 2 1 26 26 H 1.09001 * 109.46811 * 185.19450 * 4 2 1 27 27 H 0.97006 * 119.99868 * 0.27482 * 8 7 5 28 28 H 1.08997 * 109.47299 * 57.03870 * 14 13 2 29 29 H 1.09001 * 109.46889 * 177.03998 * 14 13 2 30 30 H 1.08994 * 109.47228 * 297.03680 * 14 13 2 31 31 H 1.09001 * 109.46790 * 290.00097 * 15 13 2 32 32 H 1.08996 * 109.47090 * 49.99675 * 15 13 2 33 33 H 1.08001 * 125.99168 * 180.11359 * 18 17 16 34 34 H 1.08004 * 126.58972 * 179.75344 * 19 18 17 35 35 H 1.09002 * 109.46810 * 90.00072 * 21 20 16 36 36 H 1.08993 * 109.47318 * 210.00048 * 21 20 16 37 37 H 1.09002 * 109.47431 * 330.00377 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6454 0.0596 -2.4764 6 1 1.0517 0.9563 -2.3780 7 6 2.0425 -0.3709 -3.7246 8 7 2.7701 -1.4599 -3.8439 9 14 1.5529 0.5966 -5.2456 10 1 2.1061 -0.0668 -6.4536 11 1 0.0720 0.6484 -5.3439 12 1 2.0912 1.9771 -5.1487 13 7 2.0197 -0.6925 1.1994 14 6 3.4770 -0.8706 1.1464 15 6 1.6206 0.0217 2.4195 16 6 1.9213 -0.8335 3.6233 17 7 1.1041 -1.6916 4.1699 18 6 1.7075 -2.2713 5.2182 19 6 2.9429 -1.7468 5.3301 20 7 3.0790 -0.8348 4.3186 21 6 4.2602 -0.0136 4.0416 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6027 -1.7185 -1.2970 26 1 3.1260 -0.8026 -1.2040 27 1 3.0241 -1.9625 -3.0541 28 1 3.9577 0.1008 1.0311 29 1 3.8196 -1.3384 2.0694 30 1 3.7347 -1.5063 0.2994 31 1 2.1754 0.9573 2.4907 32 1 0.5523 0.2347 2.3828 33 1 1.2766 -3.0236 5.8623 34 1 3.6836 -1.9974 6.0751 35 1 4.1849 0.9269 4.5874 36 1 5.1561 -0.5471 4.3590 37 1 4.3184 0.1904 2.9725 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000515654946.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:27 Heat of formation + Delta-G solvation = 66.710058 kcal Electronic energy + Delta-G solvation = -17160.095956 eV Core-core repulsion = 14552.797604 eV Total energy + Delta-G solvation = -2607.298352 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.05100 -37.82733 -34.11573 -33.52079 -31.35147 -29.79227 -27.91564 -26.95453 -25.64025 -24.16145 -22.78327 -21.28966 -19.68632 -19.18817 -17.17430 -16.77969 -16.05734 -15.27295 -14.76051 -14.28542 -14.05364 -13.70776 -13.47253 -13.31266 -12.97707 -12.72319 -12.58094 -12.36839 -11.79365 -11.47783 -11.36147 -10.96557 -10.78856 -10.71238 -10.13412 -10.07925 -9.83355 -9.56675 -9.44885 -8.60176 -8.32324 -8.30006 -7.85425 -6.34135 -4.02815 2.05196 2.78261 3.22887 3.44387 3.46510 3.64958 4.36644 4.56043 4.57618 4.62261 4.82982 4.92377 5.19549 5.26020 5.42542 5.45450 5.51680 5.66022 5.68578 5.80167 6.00043 6.06286 6.25879 6.27180 6.33455 6.60426 6.77350 6.82112 7.04451 7.16593 7.27239 7.38115 7.57182 7.70331 8.24079 8.24868 8.47523 8.89903 9.68668 11.06384 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.047970 B = 0.005162 C = 0.004987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.552525 B = 5423.353444 C = 5612.888034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.094 3.906 3 H 0.031 0.969 4 C 0.017 3.983 5 C -0.598 4.598 6 H 0.050 0.950 7 C 0.016 3.984 8 N -0.913 5.913 9 Si 1.068 2.932 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.289 1.289 13 N -0.531 5.531 14 C 0.020 3.980 15 C 0.133 3.867 16 C 0.227 3.773 17 N -0.478 5.478 18 C -0.030 4.030 19 C -0.067 4.067 20 N -0.460 5.460 21 C 0.059 3.941 22 H 0.035 0.965 23 H 0.068 0.932 24 H 0.057 0.943 25 H 0.015 0.985 26 H 0.011 0.989 27 H 0.269 0.731 28 H 0.022 0.978 29 H 0.054 0.946 30 H 0.081 0.919 31 H 0.041 0.959 32 H 0.107 0.893 33 H 0.167 0.833 34 H 0.171 0.829 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.888 3.465 16.579 17.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.013 4.013 3 H 0.049 0.951 4 C -0.021 4.021 5 C -0.637 4.637 6 H 0.068 0.932 7 C -0.188 4.188 8 N -0.549 5.549 9 Si 0.896 3.104 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.216 1.216 13 N -0.256 5.256 14 C -0.128 4.128 15 C 0.004 3.996 16 C -0.036 4.036 17 N -0.197 5.197 18 C -0.178 4.178 19 C -0.200 4.200 20 N -0.143 5.143 21 C -0.083 4.083 22 H 0.054 0.946 23 H 0.087 0.913 24 H 0.076 0.924 25 H 0.034 0.966 26 H 0.029 0.971 27 H 0.079 0.921 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.059 0.941 32 H 0.125 0.875 33 H 0.185 0.815 34 H 0.188 0.812 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.137 2.966 14.634 15.084 hybrid contribution 1.258 0.831 2.149 2.626 sum 3.395 3.797 16.784 17.540 Atomic orbital electron populations 1.21764 0.94795 1.02012 1.00255 1.21741 0.95471 0.95074 0.88975 0.95111 1.19354 0.95593 0.96138 0.90975 1.21995 1.37153 1.12065 0.92438 0.93213 1.25796 0.94577 0.97163 1.01284 1.70775 1.34753 1.15846 1.33553 0.83563 0.76100 0.75077 0.75664 1.20828 1.21403 1.21580 1.62052 1.11904 1.50300 1.01336 1.22598 0.88125 0.99893 1.02232 1.20454 1.03030 0.91188 0.84958 1.23220 0.82593 1.00460 0.97296 1.70263 1.31053 1.09129 1.09206 1.22301 0.92735 1.03731 0.99041 1.22619 1.01498 0.98570 0.97321 1.45365 1.13578 1.31556 1.23835 1.22277 0.86450 0.95270 1.04330 0.94638 0.91322 0.92423 0.96624 0.97068 0.92099 0.95962 0.92729 0.89998 0.94088 0.87454 0.81546 0.81203 0.90693 0.89593 0.88710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 8.89 37.16 0.33 -2.24 16 2 C 0.09 1.96 2.10 -67.71 -0.14 1.82 16 3 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 4 C 0.02 0.42 3.46 -27.88 -0.10 0.33 16 5 C -0.60 -16.68 8.45 -34.44 -0.29 -16.97 16 6 H 0.05 1.36 6.98 -52.49 -0.37 0.99 16 7 C 0.02 0.45 5.46 -17.82 -0.10 0.35 16 8 N -0.91 -27.94 13.65 55.43 0.76 -27.18 16 9 Si 1.07 25.17 29.90 -169.99 -5.08 20.09 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 13 N -0.53 -9.87 4.62 -236.33 -1.09 -10.96 16 14 C 0.02 0.33 7.37 60.07 0.44 0.78 16 15 C 0.13 2.12 5.03 -4.98 -0.03 2.09 16 16 C 0.23 3.60 6.57 -155.42 -1.02 2.58 16 17 N -0.48 -8.29 11.25 -10.81 -0.12 -8.42 16 18 C -0.03 -0.41 11.87 -17.81 -0.21 -0.62 16 19 C -0.07 -0.80 11.58 -16.56 -0.19 -0.99 16 20 N -0.46 -5.89 2.75 -121.28 -0.33 -6.22 16 21 C 0.06 0.54 9.93 59.85 0.59 1.13 16 22 H 0.03 0.59 6.29 -51.93 -0.33 0.27 16 23 H 0.07 1.40 6.91 -51.93 -0.36 1.05 16 24 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 25 H 0.02 0.43 8.09 -51.93 -0.42 0.01 16 26 H 0.01 0.29 5.84 -51.93 -0.30 -0.01 16 27 H 0.27 8.23 7.21 -40.82 -0.29 7.93 16 28 H 0.02 0.35 7.49 -51.93 -0.39 -0.04 16 29 H 0.05 0.83 5.17 -51.93 -0.27 0.56 16 30 H 0.08 1.57 6.27 -51.93 -0.33 1.24 16 31 H 0.04 0.58 7.69 -51.93 -0.40 0.18 16 32 H 0.11 1.73 5.97 -51.93 -0.31 1.42 16 33 H 0.17 1.84 8.06 -52.49 -0.42 1.42 16 34 H 0.17 1.37 8.06 -52.48 -0.42 0.94 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 0.94 4.61 -51.93 -0.24 0.70 16 LS Contribution 291.40 15.07 4.39 4.39 Total: -1.00 -33.06 291.40 -7.52 -40.58 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -5.33 Total: -0.53 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -0.71 Total: -11.74 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: -0.79 Total: -52.78 kcal Atomic # 14 Polarization: 25.17 SS G_CDS: -5.08 Total: 20.09 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -33.06 -7.52 -40.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515654946.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.288 kcal (2) G-P(sol) polarization free energy of solvation -33.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds