Wall clock time and date at job start Sun Mar 29 2020 21:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47528 * 2 1 4 4 C 1.53005 * 109.46944 * 239.99881 * 2 1 3 5 5 C 1.50706 * 109.46989 * 65.19810 * 4 2 1 6 6 H 1.08000 * 119.99673 * 357.45100 * 5 4 2 7 7 C 1.37873 * 119.99665 * 177.44990 * 5 4 2 8 8 N 1.31508 * 120.00495 * 359.72597 * 7 5 4 9 9 Si 1.86805 * 119.99514 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46934 * 179.73072 * 9 7 5 11 11 H 1.48503 * 109.47074 * 299.72500 * 9 7 5 12 12 H 1.48490 * 109.47316 * 59.72832 * 9 7 5 13 13 N 1.46905 * 109.47363 * 120.00138 * 2 1 3 14 14 C 1.46903 * 110.99876 * 172.42826 * 13 2 1 15 15 C 1.46900 * 110.99793 * 296.38273 * 13 2 1 16 16 C 1.50695 * 109.46968 * 169.99724 * 15 13 2 17 17 N 1.30495 * 125.65195 * 269.69480 * 16 15 13 18 18 C 1.34132 * 109.25914 * 179.89414 * 17 16 15 19 19 C 1.34673 * 108.01693 * 0.37059 * 18 17 16 20 20 N 1.35050 * 125.65046 * 90.00173 * 16 15 13 21 21 C 1.46501 * 126.39440 * 359.93839 * 20 16 15 22 22 H 1.08996 * 109.47045 * 299.99887 * 1 2 3 23 23 H 1.08997 * 109.47292 * 60.00003 * 1 2 3 24 24 H 1.09002 * 109.47025 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47275 * 305.19191 * 4 2 1 26 26 H 1.09001 * 109.46811 * 185.19450 * 4 2 1 27 27 H 0.97006 * 119.99868 * 0.27482 * 8 7 5 28 28 H 1.08997 * 109.47299 * 57.03870 * 14 13 2 29 29 H 1.09001 * 109.46889 * 177.03998 * 14 13 2 30 30 H 1.08994 * 109.47228 * 297.03680 * 14 13 2 31 31 H 1.09001 * 109.46790 * 290.00097 * 15 13 2 32 32 H 1.08996 * 109.47090 * 49.99675 * 15 13 2 33 33 H 1.08001 * 125.99168 * 180.11359 * 18 17 16 34 34 H 1.08004 * 126.58972 * 179.75344 * 19 18 17 35 35 H 1.09002 * 109.46810 * 90.00072 * 21 20 16 36 36 H 1.08993 * 109.47318 * 210.00048 * 21 20 16 37 37 H 1.09002 * 109.47431 * 330.00377 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6454 0.0596 -2.4764 6 1 1.0517 0.9563 -2.3780 7 6 2.0425 -0.3709 -3.7246 8 7 2.7701 -1.4599 -3.8439 9 14 1.5529 0.5966 -5.2456 10 1 2.1061 -0.0668 -6.4536 11 1 0.0720 0.6484 -5.3439 12 1 2.0912 1.9771 -5.1487 13 7 2.0197 -0.6925 1.1994 14 6 3.4770 -0.8706 1.1464 15 6 1.6206 0.0217 2.4195 16 6 1.9213 -0.8335 3.6233 17 7 1.1041 -1.6916 4.1699 18 6 1.7075 -2.2713 5.2182 19 6 2.9429 -1.7468 5.3301 20 7 3.0790 -0.8348 4.3186 21 6 4.2602 -0.0136 4.0416 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6027 -1.7185 -1.2970 26 1 3.1260 -0.8026 -1.2040 27 1 3.0241 -1.9625 -3.0541 28 1 3.9577 0.1008 1.0311 29 1 3.8196 -1.3384 2.0694 30 1 3.7347 -1.5063 0.2994 31 1 2.1754 0.9573 2.4907 32 1 0.5523 0.2347 2.3828 33 1 1.2766 -3.0236 5.8623 34 1 3.6836 -1.9974 6.0751 35 1 4.1849 0.9269 4.5874 36 1 5.1561 -0.5471 4.3590 37 1 4.3184 0.1904 2.9725 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000515654946.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:26 Heat of formation + Delta-G solvation = 44.523094 kcal Electronic energy + Delta-G solvation = -17161.058055 eV Core-core repulsion = 14552.797604 eV Total energy + Delta-G solvation = -2608.260451 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.07175 -39.36732 -35.65759 -34.94353 -33.04029 -31.07267 -29.35793 -28.12448 -27.06640 -25.74151 -24.65762 -22.27425 -21.17447 -20.49296 -18.97203 -18.00841 -17.31726 -16.70953 -15.94502 -15.64732 -15.53749 -15.44843 -14.67005 -14.56980 -14.26679 -13.98909 -13.72322 -13.56584 -13.46023 -13.21655 -12.94435 -12.63584 -12.57296 -12.21599 -11.95323 -11.90680 -11.26999 -10.91756 -10.69676 -10.55435 -10.49775 -9.44553 -9.22357 -8.64579 -6.34047 1.04582 1.54429 1.62973 1.81543 1.88839 2.13459 2.58906 3.05311 3.20309 3.43603 3.81395 3.92528 4.05986 4.15696 4.22421 4.27464 4.33264 4.46044 4.51900 4.57650 4.57835 4.63007 4.83167 4.85586 4.97694 5.08718 5.22604 5.30346 5.32822 5.50178 5.84302 5.89581 6.05833 6.16940 6.22087 6.26403 6.61498 7.19747 7.47383 8.75913 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.047970 B = 0.005162 C = 0.004987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.552525 B = 5423.353444 C = 5612.888034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.105 3.895 3 H 0.034 0.966 4 C 0.023 3.977 5 C -0.606 4.606 6 H 0.056 0.944 7 C -0.039 4.039 8 N -0.940 5.940 9 Si 1.117 2.883 10 H -0.287 1.287 11 H -0.270 1.270 12 H -0.267 1.267 13 N -0.547 5.547 14 C 0.028 3.972 15 C 0.140 3.860 16 C 0.199 3.801 17 N -0.521 5.521 18 C -0.061 4.061 19 C -0.045 4.045 20 N -0.457 5.457 21 C 0.052 3.948 22 H 0.067 0.933 23 H 0.057 0.943 24 H 0.040 0.960 25 H -0.019 1.019 26 H -0.003 1.003 27 H 0.253 0.747 28 H 0.036 0.964 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.185 0.815 34 H 0.213 0.787 35 H 0.096 0.904 36 H 0.113 0.887 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.495 4.999 18.059 19.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.002 4.002 3 H 0.052 0.948 4 C -0.014 4.014 5 C -0.645 4.645 6 H 0.075 0.925 7 C -0.236 4.236 8 N -0.578 5.578 9 Si 0.938 3.062 10 H -0.213 1.213 11 H -0.195 1.195 12 H -0.192 1.192 13 N -0.272 5.272 14 C -0.120 4.120 15 C 0.011 3.989 16 C -0.064 4.064 17 N -0.241 5.241 18 C -0.209 4.209 19 C -0.178 4.178 20 N -0.140 5.140 21 C -0.089 4.089 22 H 0.086 0.914 23 H 0.076 0.924 24 H 0.059 0.941 25 H -0.001 1.001 26 H 0.016 0.984 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.120 0.880 33 H 0.202 0.798 34 H 0.230 0.770 35 H 0.115 0.885 36 H 0.131 0.869 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.753 4.519 16.146 16.991 hybrid contribution 1.114 0.303 1.822 2.157 sum 3.867 4.823 17.968 19.002 Atomic orbital electron populations 1.21678 0.93917 1.01242 1.01298 1.21445 0.96106 0.94467 0.88224 0.94784 1.19216 0.94538 0.94630 0.93045 1.22395 1.36488 1.12187 0.93385 0.92542 1.27374 0.93893 0.97250 1.05106 1.70915 1.36853 1.17271 1.32780 0.82944 0.76870 0.74637 0.71769 1.21257 1.19486 1.19204 1.61929 1.12816 1.50922 1.01574 1.22508 0.87527 1.00164 1.01811 1.20370 1.02944 0.91861 0.83740 1.23001 0.84008 1.01354 0.98008 1.70162 1.32921 1.10229 1.10778 1.22774 0.94013 1.04958 0.99175 1.23272 1.01348 0.96455 0.96765 1.45578 1.13581 1.31551 1.23281 1.22548 0.85955 0.96217 1.04145 0.91449 0.92356 0.94069 1.00083 0.98445 0.93767 0.94530 0.90818 0.93134 0.91882 0.88031 0.79824 0.76994 0.88543 0.86899 0.89732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.85 8.89 71.98 0.64 -4.21 16 2 C 0.10 4.39 2.10 44.92 0.09 4.49 16 3 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 4 C 0.02 1.21 3.46 29.85 0.10 1.31 16 5 C -0.61 -34.20 8.45 25.60 0.22 -33.99 16 6 H 0.06 3.05 6.98 -2.91 -0.02 3.03 16 7 C -0.04 -2.28 5.46 84.65 0.46 -1.81 16 8 N -0.94 -59.07 13.65 21.44 0.29 -58.77 16 9 Si 1.12 50.19 29.90 68.60 2.05 52.25 16 10 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 11 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 12 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 13 N -0.55 -20.26 4.62 -901.61 -4.17 -24.43 16 14 C 0.03 0.94 7.37 127.69 0.94 1.88 16 15 C 0.14 4.27 5.03 85.56 0.43 4.70 16 16 C 0.20 6.04 6.57 138.13 0.91 6.95 16 17 N -0.52 -17.75 11.25 -188.13 -2.12 -19.87 16 18 C -0.06 -1.62 11.87 83.52 0.99 -0.63 16 19 C -0.04 -0.92 11.58 83.09 0.96 0.05 16 20 N -0.46 -10.42 2.75 -537.62 -1.48 -11.90 16 21 C 0.05 0.76 9.93 127.77 1.27 2.03 16 22 H 0.07 2.18 6.29 -2.39 -0.02 2.17 16 23 H 0.06 2.37 6.91 -2.39 -0.02 2.35 16 24 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 25 H -0.02 -1.13 8.09 -2.39 -0.02 -1.15 16 26 H 0.00 -0.14 5.84 -2.39 -0.01 -0.16 16 27 H 0.25 16.23 7.21 -92.70 -0.67 15.56 16 28 H 0.04 1.11 7.49 -2.39 -0.02 1.10 16 29 H 0.07 2.17 5.17 -2.39 -0.01 2.16 16 30 H 0.05 2.00 6.27 -2.39 -0.01 1.99 16 31 H 0.06 1.63 7.69 -2.39 -0.02 1.61 16 32 H 0.10 3.16 5.97 -2.39 -0.01 3.15 16 33 H 0.18 3.82 8.06 -2.91 -0.02 3.80 16 34 H 0.21 2.35 8.06 -2.91 -0.02 2.33 16 35 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.08 1.43 4.61 -2.39 -0.01 1.42 16 Total: -1.00 -73.42 291.40 2.76 -70.66 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: 1.15 Total: 11.30 kcal Atomic # 6 Polarization: -26.25 SS G_CDS: 7.02 Total: -19.23 kcal Atomic # 7 Polarization: -107.50 SS G_CDS: -7.47 Total: -114.97 kcal Atomic # 14 Polarization: 50.19 SS G_CDS: 2.05 Total: 52.25 kcal Total: -73.42 2.76 -70.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515654946.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.185 kcal (2) G-P(sol) polarization free energy of solvation -73.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds