Wall clock time and date at job start Sun Mar 29 2020 22:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 120.00081 * 2 1 4 4 C 1.52996 * 109.47225 * 124.99917 * 3 2 1 5 5 C 1.53000 * 109.47454 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.47536 * 179.97438 * 5 4 3 7 7 N 1.46502 * 109.47319 * 179.97438 * 6 5 4 8 8 C 1.36934 * 120.00185 * 270.00429 * 7 6 5 9 9 H 1.08010 * 119.99752 * 141.59457 * 8 7 6 10 10 C 1.38806 * 120.00099 * 321.59637 * 8 7 6 11 11 N 1.31619 * 120.00191 * 339.26715 * 10 8 7 12 12 Si 1.86804 * 119.99928 * 159.26509 * 10 8 7 13 13 H 1.48496 * 109.47253 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46880 * 120.00098 * 12 10 8 15 15 H 1.48504 * 109.46924 * 239.99813 * 12 10 8 16 16 C 1.46503 * 119.99486 * 89.99804 * 7 6 5 17 17 C 1.54267 * 110.03404 * 242.54933 * 16 7 6 18 18 C 1.54964 * 104.16155 * 217.14345 * 17 16 7 19 19 C 1.54891 * 102.78000 * 37.88701 * 18 17 16 20 20 C 1.53885 * 110.02857 * 125.33706 * 16 7 6 21 21 H 1.07996 * 119.99919 * 0.02562 * 1 2 3 22 22 H 1.07997 * 120.00098 * 180.02562 * 1 2 3 23 23 H 1.08003 * 119.99736 * 179.97438 * 2 1 3 24 24 H 1.09000 * 109.47076 * 4.99806 * 3 2 1 25 25 H 1.09004 * 109.46988 * 244.99909 * 3 2 1 26 26 H 1.09002 * 109.47691 * 59.99905 * 4 3 2 27 27 H 1.09004 * 109.47131 * 299.99904 * 4 3 2 28 28 H 1.09002 * 109.46603 * 59.99418 * 5 4 3 29 29 H 1.09004 * 109.47019 * 300.00151 * 5 4 3 30 30 H 1.09000 * 109.46828 * 60.00301 * 6 5 4 31 31 H 1.08998 * 109.47552 * 299.99890 * 6 5 4 32 32 H 0.96997 * 120.00528 * 175.03239 * 11 10 8 33 33 H 1.08997 * 110.02248 * 3.94701 * 16 7 6 34 34 H 1.08998 * 110.48761 * 335.78596 * 17 16 7 35 35 H 1.09000 * 110.48226 * 98.42973 * 17 16 7 36 36 H 1.09006 * 110.71654 * 279.57657 * 18 17 16 37 37 H 1.09000 * 110.92813 * 156.30019 * 18 17 16 38 38 H 1.09000 * 110.48504 * 203.40685 * 19 18 17 39 39 H 1.08996 * 110.59748 * 80.81662 * 19 18 17 40 40 H 1.08996 * 110.02864 * 238.57449 * 20 16 7 41 41 H 1.09001 * 110.02882 * 359.97438 * 20 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.8005 2.6578 1.1813 6 6 4.7716 2.6861 2.3632 7 7 5.5050 3.9543 2.3625 8 6 6.6889 4.0602 1.6827 9 1 6.9252 4.9685 1.1481 10 6 7.5852 3.0004 1.6806 11 7 7.5201 2.0815 2.6206 12 14 8.8840 2.8782 0.3434 13 1 8.7466 4.0277 -0.5866 14 1 10.2342 2.9007 0.9613 15 1 8.7041 1.6094 -0.4069 16 6 4.9715 5.1092 3.0891 17 6 4.6676 6.2581 2.1055 18 6 5.0569 7.5388 2.8863 19 6 6.3239 7.0966 3.6598 20 6 6.0239 5.6422 4.0773 21 1 -0.5400 0.9353 -0.0004 22 1 -0.5400 -0.9353 0.0004 23 1 1.8500 -0.9354 0.0004 24 1 1.3586 2.1316 0.0895 25 1 2.6213 1.4025 -0.9314 26 1 3.7400 0.5066 1.0922 27 1 2.4772 1.2356 2.1130 28 1 3.0958 3.4846 1.2705 29 1 4.3584 2.7549 0.2498 30 1 5.4762 1.8593 2.2743 31 1 4.2134 2.5893 3.2945 32 1 8.0981 1.3036 2.5795 33 1 4.0654 4.8270 3.6250 34 1 5.2751 6.1607 1.2057 35 1 3.6077 6.2724 1.8515 36 1 4.2634 7.8257 3.5765 37 1 5.2869 8.3564 2.2032 38 1 6.4720 7.7232 4.5393 39 1 7.2006 7.1348 3.0133 40 1 5.6281 5.6191 5.0926 41 1 6.9313 5.0412 4.0165 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516394259.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:00 Heat of formation + Delta-G solvation = 6.384883 kcal Electronic energy + Delta-G solvation = -17365.975843 eV Core-core repulsion = 14859.601938 eV Total energy + Delta-G solvation = -2506.373905 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -37.73776 -36.07604 -34.36349 -32.14914 -30.69909 -27.81445 -27.68853 -26.26025 -24.04824 -21.72114 -20.27236 -19.85049 -19.49365 -18.95942 -16.18245 -15.49894 -15.15550 -14.73211 -14.32330 -14.12284 -13.49880 -13.28272 -12.79576 -12.52131 -12.28055 -12.15586 -11.49979 -11.18288 -11.03116 -10.97827 -10.70468 -10.51295 -10.36234 -10.29607 -10.28868 -10.15401 -10.07033 -9.97397 -9.58197 -9.45350 -9.36586 -9.12865 -8.37597 -6.47335 -5.66636 -3.30921 2.38240 3.38180 3.47679 3.49863 4.53823 4.98999 5.24406 5.33113 5.42068 5.48431 5.53529 5.54822 5.68427 5.78323 5.93499 6.01181 6.12946 6.21723 6.29262 6.34156 6.42860 6.48016 6.49571 6.60122 6.61857 6.65028 6.70588 6.71634 6.88576 6.89591 6.97323 6.97462 7.08678 7.22233 7.35029 7.47420 7.80783 7.91175 8.61593 9.29358 9.92089 10.51047 11.28044 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.016508 B = 0.007687 C = 0.005773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.715885 B = 3641.732299 C = 4848.585303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.141 4.141 3 C -0.096 4.096 4 C -0.110 4.110 5 C -0.133 4.133 6 C 0.147 3.853 7 N -0.580 5.580 8 C -0.242 4.242 9 H 0.059 0.941 10 C 0.010 3.990 11 N -0.886 5.886 12 Si 0.887 3.113 13 H -0.277 1.277 14 H -0.291 1.291 15 H -0.289 1.289 16 C 0.171 3.829 17 C -0.135 4.135 18 C -0.123 4.123 19 C -0.117 4.117 20 C -0.131 4.131 21 H 0.093 0.907 22 H 0.092 0.908 23 H 0.106 0.894 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.040 0.960 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.019 0.981 32 H 0.251 0.749 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.045 0.955 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.046 0.954 39 H 0.061 0.939 40 H 0.039 0.961 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.866 1.711 -1.606 9.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.159 4.159 3 C -0.133 4.133 4 C -0.149 4.149 5 C -0.173 4.173 6 C 0.021 3.979 7 N -0.299 5.299 8 C -0.372 4.372 9 H 0.077 0.923 10 C -0.189 4.189 11 N -0.529 5.529 12 Si 0.717 3.283 13 H -0.202 1.202 14 H -0.218 1.218 15 H -0.216 1.216 16 C 0.063 3.937 17 C -0.174 4.174 18 C -0.161 4.161 19 C -0.155 4.155 20 C -0.171 4.171 21 H 0.112 0.888 22 H 0.110 0.890 23 H 0.124 0.876 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.109 0.891 31 H 0.037 0.963 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.058 0.942 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.709 1.589 -1.518 8.982 hybrid contribution 0.638 -0.222 -0.723 0.990 sum -8.071 1.367 -2.241 8.487 Atomic orbital electron populations 1.23766 0.96014 1.01358 1.03659 1.23126 0.95984 0.99068 0.97731 1.20843 0.98292 0.94384 0.99802 1.21491 0.97201 0.99524 0.96649 1.22192 0.98223 0.94398 1.02444 1.20915 0.92964 0.91708 0.92331 1.43956 1.21700 1.07162 1.57041 1.18928 0.93451 1.01749 1.23071 0.92344 1.25130 0.96634 1.00081 0.97095 1.70083 1.40419 1.12002 1.30380 0.86478 0.81796 0.77655 0.82382 1.20194 1.21812 1.21609 1.21033 0.93833 0.88231 0.90591 1.22859 0.99345 0.94968 1.00257 1.22441 0.97594 0.97553 0.98499 1.22251 0.97631 0.96986 0.98651 1.22554 1.02018 0.95173 0.97316 0.88844 0.89011 0.87642 0.91973 0.91183 0.92195 0.92778 0.94108 0.92452 0.89121 0.96279 0.93913 0.93661 0.90912 0.93659 0.92778 0.93024 0.93522 0.92042 0.94249 0.89645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.41 14.32 29.01 0.42 -1.99 16 2 C -0.14 -1.79 9.52 -36.03 -0.34 -2.13 16 3 C -0.10 -1.36 5.66 -27.89 -0.16 -1.51 16 4 C -0.11 -1.82 5.20 -26.73 -0.14 -1.95 16 5 C -0.13 -2.59 5.54 -26.73 -0.15 -2.73 16 6 C 0.15 3.38 5.28 -4.04 -0.02 3.36 16 7 N -0.58 -13.96 2.38 -164.39 -0.39 -14.35 16 8 C -0.24 -6.37 7.75 -15.06 -0.12 -6.49 16 9 H 0.06 1.57 6.94 -52.48 -0.36 1.21 16 10 C 0.01 0.28 4.96 -17.43 -0.09 0.19 16 11 N -0.89 -25.07 11.48 55.49 0.64 -24.44 16 12 Si 0.89 21.41 29.61 -169.99 -5.03 16.37 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 16 C 0.17 3.60 3.42 -66.81 -0.23 3.37 16 17 C -0.13 -2.54 6.43 -25.03 -0.16 -2.70 16 18 C -0.12 -2.01 6.91 -24.70 -0.17 -2.18 16 19 C -0.12 -2.07 6.83 -25.07 -0.17 -2.24 16 20 C -0.13 -2.69 6.25 -25.61 -0.16 -2.85 16 21 H 0.09 1.02 7.84 -52.49 -0.41 0.60 16 22 H 0.09 0.91 8.06 -52.49 -0.42 0.48 16 23 H 0.11 1.27 8.06 -52.48 -0.42 0.85 16 24 H 0.06 0.85 7.79 -51.93 -0.40 0.44 16 25 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.09 2.37 5.55 -51.93 -0.29 2.08 16 31 H 0.02 0.42 7.91 -51.93 -0.41 0.01 16 32 H 0.25 6.89 8.32 -40.82 -0.34 6.55 16 33 H 0.05 0.93 7.81 -51.93 -0.41 0.52 16 34 H 0.07 1.52 6.64 -51.93 -0.34 1.17 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 2.08 7.17 -51.93 -0.37 1.71 16 LS Contribution 324.49 15.07 4.89 4.89 Total: -1.00 -27.10 324.49 -9.02 -36.11 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -7.63 Total: 1.28 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: -1.49 Total: -19.86 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.25 Total: -38.79 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.10 -9.02 -36.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516394259.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.498 kcal (2) G-P(sol) polarization free energy of solvation -27.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds