Wall clock time and date at job start Sun Mar 29 2020 22:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 120.00081 * 2 1 4 4 C 1.52996 * 109.47225 * 124.99917 * 3 2 1 5 5 C 1.53000 * 109.47454 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.47536 * 179.97438 * 5 4 3 7 7 N 1.46502 * 109.47319 * 179.97438 * 6 5 4 8 8 C 1.36934 * 120.00185 * 270.00429 * 7 6 5 9 9 H 1.08010 * 119.99752 * 141.59457 * 8 7 6 10 10 C 1.38806 * 120.00099 * 321.59637 * 8 7 6 11 11 N 1.31619 * 120.00191 * 339.26715 * 10 8 7 12 12 Si 1.86804 * 119.99928 * 159.26509 * 10 8 7 13 13 H 1.48496 * 109.47253 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46880 * 120.00098 * 12 10 8 15 15 H 1.48504 * 109.46924 * 239.99813 * 12 10 8 16 16 C 1.46503 * 119.99486 * 89.99804 * 7 6 5 17 17 C 1.54267 * 110.03404 * 242.54933 * 16 7 6 18 18 C 1.54964 * 104.16155 * 217.14345 * 17 16 7 19 19 C 1.54891 * 102.78000 * 37.88701 * 18 17 16 20 20 C 1.53885 * 110.02857 * 125.33706 * 16 7 6 21 21 H 1.07996 * 119.99919 * 0.02562 * 1 2 3 22 22 H 1.07997 * 120.00098 * 180.02562 * 1 2 3 23 23 H 1.08003 * 119.99736 * 179.97438 * 2 1 3 24 24 H 1.09000 * 109.47076 * 4.99806 * 3 2 1 25 25 H 1.09004 * 109.46988 * 244.99909 * 3 2 1 26 26 H 1.09002 * 109.47691 * 59.99905 * 4 3 2 27 27 H 1.09004 * 109.47131 * 299.99904 * 4 3 2 28 28 H 1.09002 * 109.46603 * 59.99418 * 5 4 3 29 29 H 1.09004 * 109.47019 * 300.00151 * 5 4 3 30 30 H 1.09000 * 109.46828 * 60.00301 * 6 5 4 31 31 H 1.08998 * 109.47552 * 299.99890 * 6 5 4 32 32 H 0.96997 * 120.00528 * 175.03239 * 11 10 8 33 33 H 1.08997 * 110.02248 * 3.94701 * 16 7 6 34 34 H 1.08998 * 110.48761 * 335.78596 * 17 16 7 35 35 H 1.09000 * 110.48226 * 98.42973 * 17 16 7 36 36 H 1.09006 * 110.71654 * 279.57657 * 18 17 16 37 37 H 1.09000 * 110.92813 * 156.30019 * 18 17 16 38 38 H 1.09000 * 110.48504 * 203.40685 * 19 18 17 39 39 H 1.08996 * 110.59748 * 80.81662 * 19 18 17 40 40 H 1.08996 * 110.02864 * 238.57449 * 20 16 7 41 41 H 1.09001 * 110.02882 * 359.97438 * 20 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.8005 2.6578 1.1813 6 6 4.7716 2.6861 2.3632 7 7 5.5050 3.9543 2.3625 8 6 6.6889 4.0602 1.6827 9 1 6.9252 4.9685 1.1481 10 6 7.5852 3.0004 1.6806 11 7 7.5201 2.0815 2.6206 12 14 8.8840 2.8782 0.3434 13 1 8.7466 4.0277 -0.5866 14 1 10.2342 2.9007 0.9613 15 1 8.7041 1.6094 -0.4069 16 6 4.9715 5.1092 3.0891 17 6 4.6676 6.2581 2.1055 18 6 5.0569 7.5388 2.8863 19 6 6.3239 7.0966 3.6598 20 6 6.0239 5.6422 4.0773 21 1 -0.5400 0.9353 -0.0004 22 1 -0.5400 -0.9353 0.0004 23 1 1.8500 -0.9354 0.0004 24 1 1.3586 2.1316 0.0895 25 1 2.6213 1.4025 -0.9314 26 1 3.7400 0.5066 1.0922 27 1 2.4772 1.2356 2.1130 28 1 3.0958 3.4846 1.2705 29 1 4.3584 2.7549 0.2498 30 1 5.4762 1.8593 2.2743 31 1 4.2134 2.5893 3.2945 32 1 8.0981 1.3036 2.5795 33 1 4.0654 4.8270 3.6250 34 1 5.2751 6.1607 1.2057 35 1 3.6077 6.2724 1.8515 36 1 4.2634 7.8257 3.5765 37 1 5.2869 8.3564 2.2032 38 1 6.4720 7.7232 4.5393 39 1 7.2006 7.1348 3.0133 40 1 5.6281 5.6191 5.0926 41 1 6.9313 5.0412 4.0165 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000516394259.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:59 Heat of formation + Delta-G solvation = -5.194203 kcal Electronic energy + Delta-G solvation = -17366.477950 eV Core-core repulsion = 14859.601938 eV Total energy + Delta-G solvation = -2506.876012 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.39577 -37.37480 -35.95136 -33.74691 -32.43529 -29.32350 -29.13797 -28.03998 -25.72194 -23.31047 -21.83204 -21.27069 -20.71848 -20.54139 -18.10251 -17.10383 -16.52971 -16.41250 -15.98751 -15.48676 -15.04442 -14.78759 -14.30430 -14.05957 -13.74962 -13.63063 -13.17172 -12.83923 -12.80228 -12.44598 -12.36478 -12.11100 -11.94586 -11.80663 -11.74352 -11.71797 -11.68803 -11.41614 -11.22855 -11.17454 -11.07408 -10.42087 -10.15920 -8.46921 -7.69442 -5.38131 1.42797 1.44590 1.47325 1.55791 2.54393 3.29568 3.63950 3.98516 4.01781 4.06582 4.15712 4.31066 4.34727 4.45879 4.65452 4.70379 4.71859 4.78516 4.92737 4.95310 4.97457 5.00718 5.03293 5.06856 5.16092 5.23806 5.25610 5.29803 5.34743 5.43500 5.57540 5.62977 5.64496 5.72381 5.78394 5.80717 5.93844 5.95230 6.56209 7.26918 7.98272 8.50285 9.20387 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.016508 B = 0.007687 C = 0.005773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.715885 B = 3641.732299 C = 4848.585303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.163 4.163 3 C -0.089 4.089 4 C -0.103 4.103 5 C -0.116 4.116 6 C 0.147 3.853 7 N -0.593 5.593 8 C -0.234 4.234 9 H 0.051 0.949 10 C -0.038 4.038 11 N -0.917 5.917 12 Si 0.942 3.058 13 H -0.270 1.270 14 H -0.295 1.295 15 H -0.291 1.291 16 C 0.160 3.840 17 C -0.128 4.128 18 C -0.111 4.111 19 C -0.113 4.113 20 C -0.129 4.129 21 H 0.100 0.900 22 H 0.110 0.890 23 H 0.108 0.892 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.047 0.953 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.036 0.964 30 H 0.058 0.942 31 H 0.019 0.981 32 H 0.246 0.754 33 H 0.052 0.948 34 H 0.047 0.953 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.045 0.955 40 H 0.053 0.947 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.700 2.938 -1.959 11.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.181 4.181 3 C -0.126 4.126 4 C -0.141 4.141 5 C -0.156 4.156 6 C 0.021 3.979 7 N -0.313 5.313 8 C -0.365 4.365 9 H 0.069 0.931 10 C -0.235 4.235 11 N -0.562 5.562 12 Si 0.771 3.229 13 H -0.194 1.194 14 H -0.222 1.222 15 H -0.218 1.218 16 C 0.053 3.947 17 C -0.168 4.168 18 C -0.149 4.149 19 C -0.151 4.151 20 C -0.169 4.169 21 H 0.119 0.881 22 H 0.128 0.872 23 H 0.126 0.874 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.038 0.962 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.559 2.837 -1.879 11.093 hybrid contribution 1.139 -0.582 -0.551 1.393 sum -9.420 2.255 -2.429 9.986 Atomic orbital electron populations 1.23995 0.95528 1.02610 1.00943 1.23059 0.96560 0.98366 1.00148 1.20729 0.97866 0.95770 0.98245 1.21391 0.97257 0.97133 0.98315 1.21945 0.97513 0.96545 0.99571 1.20851 0.92795 0.90436 0.93803 1.44162 1.21463 1.08213 1.57492 1.19005 0.93921 1.01195 1.22381 0.93124 1.25718 0.98563 1.00344 0.98871 1.70198 1.41620 1.12500 1.31863 0.85614 0.79496 0.77518 0.80301 1.19445 1.22216 1.21784 1.21286 0.94055 0.88035 0.91281 1.22733 0.99894 0.95346 0.98805 1.22406 0.97246 0.96581 0.98638 1.22215 0.97896 0.95327 0.99661 1.22467 0.99721 0.96506 0.98172 0.88130 0.87207 0.87370 0.91198 0.91657 0.93376 0.92144 0.93205 0.94475 0.92371 0.96235 0.94436 0.92958 0.93431 0.92001 0.90316 0.91154 0.90846 0.93660 0.92859 0.94321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.89 14.32 67.78 0.97 -2.92 16 2 C -0.16 -3.87 9.52 25.65 0.24 -3.62 16 3 C -0.09 -2.40 5.66 29.85 0.17 -2.23 16 4 C -0.10 -3.35 5.20 30.59 0.16 -3.19 16 5 C -0.12 -4.54 5.54 30.59 0.17 -4.37 16 6 C 0.15 6.93 5.28 86.38 0.46 7.38 16 7 N -0.59 -29.12 2.38 -674.00 -1.60 -30.72 16 8 C -0.23 -12.63 7.75 84.03 0.65 -11.98 16 9 H 0.05 2.78 6.94 -2.91 -0.02 2.76 16 10 C -0.04 -2.13 4.96 84.86 0.42 -1.71 16 11 N -0.92 -53.84 11.48 21.65 0.25 -53.59 16 12 Si 0.94 45.12 29.61 68.60 2.03 47.15 16 13 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 14 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 15 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 16 C 0.16 6.66 3.42 45.72 0.16 6.81 16 17 C -0.13 -4.61 6.43 31.70 0.20 -4.40 16 18 C -0.11 -3.25 6.91 31.91 0.22 -3.03 16 19 C -0.11 -3.78 6.83 31.67 0.22 -3.57 16 20 C -0.13 -5.26 6.25 31.32 0.20 -5.06 16 21 H 0.10 1.88 7.84 -2.91 -0.02 1.85 16 22 H 0.11 1.81 8.06 -2.91 -0.02 1.79 16 23 H 0.11 2.47 8.06 -2.91 -0.02 2.45 16 24 H 0.07 1.77 7.79 -2.39 -0.02 1.75 16 25 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 26 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 28 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.06 3.16 5.55 -2.39 -0.01 3.15 16 31 H 0.02 0.88 7.91 -2.39 -0.02 0.87 16 32 H 0.25 14.07 8.32 -92.71 -0.77 13.30 16 33 H 0.05 2.08 7.81 -2.39 -0.02 2.06 16 34 H 0.05 1.94 6.64 -2.39 -0.02 1.93 16 35 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.08 1.97 8.14 -2.38 -0.02 1.96 16 37 H 0.07 1.84 8.14 -2.39 -0.02 1.83 16 38 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.04 1.92 7.17 -2.39 -0.02 1.91 16 Total: -1.00 -59.51 324.49 5.85 -53.66 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.94 Total: 15.39 kcal Atomic # 6 Polarization: -36.13 SS G_CDS: 4.23 Total: -31.89 kcal Atomic # 7 Polarization: -82.96 SS G_CDS: -1.36 Total: -84.31 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -59.51 5.85 -53.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516394259.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.467 kcal (2) G-P(sol) polarization free energy of solvation -59.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds