Wall clock time and date at job start Sun Mar 29 2020 21:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47451 * 2 1 4 4 C 1.35204 * 125.97986 * 124.99501 * 3 2 1 5 5 C 1.36036 * 107.61225 * 179.97438 * 4 3 2 6 6 N 1.40049 * 126.13443 * 179.97438 * 5 4 3 7 7 C 1.36774 * 120.00225 * 0.02562 * 6 5 4 8 8 H 1.08002 * 119.99809 * 134.09254 * 7 6 5 9 9 C 1.38752 * 119.99920 * 313.81450 * 7 6 5 10 10 N 1.31641 * 119.99781 * 158.91195 * 9 7 6 11 11 Si 1.86792 * 120.00029 * 338.91291 * 9 7 6 12 12 H 1.48506 * 109.46966 * 94.78553 * 11 9 7 13 13 H 1.48495 * 109.47080 * 214.78894 * 11 9 7 14 14 H 1.48501 * 109.47326 * 334.78990 * 11 9 7 15 15 C 1.46506 * 119.99657 * 180.02562 * 6 5 4 16 16 C 1.52996 * 109.47025 * 275.42632 * 15 6 5 17 17 C 1.52998 * 109.47247 * 176.03518 * 16 15 6 18 18 C 1.53006 * 109.47274 * 296.03793 * 16 15 6 19 19 C 1.40439 * 107.72171 * 0.24632 * 5 4 3 20 20 N 1.30787 * 108.20211 * 359.58547 * 19 5 4 21 21 H 1.08997 * 109.47377 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47296 * 300.00776 * 1 2 3 23 23 H 1.09003 * 109.46593 * 60.00749 * 1 2 3 24 24 H 1.09000 * 109.47296 * 239.99224 * 2 1 3 25 25 H 1.09003 * 109.46593 * 119.99251 * 2 1 3 26 26 H 1.07999 * 126.19521 * 0.04336 * 4 3 2 27 27 H 0.97000 * 120.00120 * 180.02562 * 10 9 7 28 28 H 1.08998 * 109.46839 * 35.42639 * 15 6 5 29 29 H 1.09001 * 109.47102 * 155.42555 * 15 6 5 30 30 H 1.08998 * 109.47696 * 56.03511 * 16 15 6 31 31 H 1.09003 * 109.47045 * 64.66774 * 17 16 15 32 32 H 1.08998 * 109.47425 * 184.66329 * 17 16 15 33 33 H 1.09000 * 109.47457 * 304.67358 * 17 16 15 34 34 H 1.08991 * 109.47150 * 65.15390 * 18 16 15 35 35 H 1.09004 * 109.47229 * 185.15887 * 18 16 15 36 36 H 1.09006 * 109.46771 * 305.15765 * 18 16 15 37 37 H 1.07997 * 125.89653 * 179.75221 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8748 1.9209 0.8963 5 6 3.0739 3.2199 0.5448 6 7 3.8935 4.1394 1.2112 7 6 4.5856 3.7557 2.3267 8 1 5.6275 4.0197 2.4331 9 6 3.9477 3.0325 3.3243 10 7 4.6549 2.3150 4.1717 11 14 2.0856 3.0768 3.4647 12 1 1.5068 1.9176 2.7391 13 1 1.6955 3.0099 4.8960 14 1 1.5742 4.3381 2.8707 15 6 4.0095 5.5124 0.7133 16 6 5.0733 5.5685 -0.3849 17 6 5.1251 6.9799 -0.9732 18 6 6.4380 5.2127 0.2083 19 6 2.3052 3.4749 -0.6025 20 7 1.6803 2.3733 -0.9288 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3632 0.5137 -0.8901 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5137 0.8901 26 1 3.3210 1.4124 1.7382 27 1 4.2090 1.8091 4.8689 28 1 3.0505 5.8337 0.3069 29 1 4.2969 6.1726 1.5316 30 1 4.8221 4.8563 -1.1709 31 1 5.4570 7.6808 -0.2071 32 1 5.8231 6.9993 -1.8101 33 1 4.1324 7.2653 -1.3211 34 1 6.4288 4.1761 0.5449 35 1 7.2091 5.3413 -0.5513 36 1 6.6484 5.8674 1.0541 37 1 2.2431 4.4172 -1.1265 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000521457519.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:47 Heat of formation + Delta-G solvation = 86.643691 kcal Electronic energy + Delta-G solvation = -17703.456032 eV Core-core repulsion = 15097.022067 eV Total energy + Delta-G solvation = -2606.433965 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.24054 -36.90306 -34.13588 -33.38319 -31.48601 -29.42127 -27.66717 -26.61720 -25.95353 -23.43478 -22.54563 -19.99771 -19.73003 -18.94320 -17.59847 -15.96588 -15.03745 -14.69553 -14.44946 -14.18171 -13.76870 -13.48419 -13.20239 -12.79714 -12.33821 -12.14847 -12.11543 -11.79118 -11.70071 -11.50427 -11.25504 -11.17886 -10.74059 -10.70045 -10.28481 -10.23195 -10.02682 -9.81786 -9.69210 -8.94028 -8.46498 -8.21729 -6.23377 -5.95509 -3.68478 2.79063 3.28655 3.39983 3.45909 3.55739 3.99828 4.44336 4.83504 5.09717 5.19049 5.31333 5.46118 5.47850 5.56043 5.73482 5.75643 5.89581 5.99020 6.05205 6.11689 6.19548 6.27823 6.29415 6.35661 6.52971 6.62990 6.68532 6.70342 6.91457 7.02671 7.09798 7.34739 7.93837 8.05659 8.32291 8.64590 8.97959 9.54899 9.93643 10.92410 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.020059 B = 0.011295 C = 0.008301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.558945 B = 2478.382313 C = 3372.083549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.144 3.856 3 N -0.376 5.376 4 C -0.045 4.045 5 C 0.077 3.923 6 N -0.494 5.494 7 C -0.296 4.296 8 H 0.091 0.909 9 C 0.055 3.945 10 N -0.884 5.884 11 Si 0.876 3.124 12 H -0.266 1.266 13 H -0.303 1.303 14 H -0.272 1.272 15 C 0.141 3.859 16 C -0.114 4.114 17 C -0.143 4.143 18 C -0.136 4.136 19 C -0.014 4.014 20 N -0.300 5.300 21 H 0.066 0.934 22 H 0.057 0.943 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.170 0.830 27 H 0.267 0.733 28 H 0.042 0.958 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.033 0.967 36 H 0.047 0.953 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.628 0.659 -7.562 8.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.021 3.979 3 N -0.167 5.167 4 C -0.193 4.193 5 C -0.032 4.032 6 N -0.199 5.199 7 C -0.424 4.424 8 H 0.108 0.892 9 C -0.148 4.148 10 N -0.522 5.522 11 Si 0.705 3.295 12 H -0.192 1.192 13 H -0.231 1.231 14 H -0.196 1.196 15 C 0.016 3.984 16 C -0.134 4.134 17 C -0.201 4.201 18 C -0.193 4.193 19 C -0.201 4.201 20 N -0.125 5.125 21 H 0.085 0.915 22 H 0.076 0.924 23 H 0.086 0.914 24 H 0.091 0.909 25 H 0.105 0.895 26 H 0.187 0.813 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -4.335 -0.004 -8.105 9.191 hybrid contribution -0.374 0.373 0.926 1.066 sum -4.709 0.369 -7.179 8.593 Atomic orbital electron populations 1.22054 0.94963 1.01855 1.03214 1.21351 0.95014 0.78803 1.02692 1.47735 1.37721 1.09001 1.22199 1.21673 1.02407 0.94923 1.00293 1.17943 0.99754 0.90536 0.94984 1.41427 1.47188 1.04746 1.26510 1.18799 0.94407 1.35016 0.94215 0.89187 1.25578 0.98001 0.96165 0.95090 1.69914 1.36134 1.27450 1.18709 0.87090 0.86920 0.79955 0.75555 1.19216 1.23075 1.19633 1.21264 0.95865 0.85718 0.95588 1.21606 0.97344 0.95799 0.98666 1.21794 1.00820 0.97294 1.00156 1.21751 0.95043 1.03254 0.99241 1.23344 1.00781 0.97476 0.98548 1.76812 1.24263 0.96800 1.14587 0.91526 0.92420 0.91435 0.90914 0.89464 0.81287 0.92336 0.94016 0.91584 0.91738 0.93025 0.93444 0.93241 0.91047 0.94741 0.93345 0.81525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 10.10 37.16 0.38 -1.88 16 2 C 0.14 2.27 7.23 -4.04 -0.03 2.24 16 3 N -0.38 -7.79 3.68 -61.11 -0.23 -8.01 16 4 C -0.05 -1.06 7.16 -16.86 -0.12 -1.18 16 5 C 0.08 1.79 5.12 -84.07 -0.43 1.36 16 6 N -0.49 -11.58 1.95 -113.40 -0.22 -11.80 16 7 C -0.30 -7.86 8.63 -15.16 -0.13 -7.99 16 8 H 0.09 2.53 6.80 -52.49 -0.36 2.18 16 9 C 0.06 1.52 4.07 -17.44 -0.07 1.44 16 10 N -0.88 -25.33 13.97 55.49 0.78 -24.56 16 11 Si 0.88 22.14 24.60 -169.99 -4.18 17.95 16 12 H -0.27 -6.55 5.86 56.52 0.33 -6.22 16 13 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 14 H -0.27 -7.10 7.11 56.52 0.40 -6.70 16 15 C 0.14 2.75 4.80 -4.04 -0.02 2.73 16 16 C -0.11 -1.93 3.11 -90.62 -0.28 -2.22 16 17 C -0.14 -1.94 9.19 37.16 0.34 -1.60 16 18 C -0.14 -2.41 8.30 37.16 0.31 -2.10 16 19 C -0.01 -0.29 11.16 -17.17 -0.19 -0.48 16 20 N -0.30 -6.31 12.40 30.74 0.38 -5.92 16 21 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 22 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.09 1.28 8.07 -51.93 -0.42 0.86 16 26 H 0.17 4.22 5.82 -52.49 -0.31 3.91 16 27 H 0.27 7.25 8.31 -40.82 -0.34 6.92 16 28 H 0.04 0.76 7.17 -51.93 -0.37 0.39 16 29 H 0.07 1.30 8.00 -51.93 -0.42 0.89 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 1.49 6.56 -51.93 -0.34 1.15 16 35 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.17 3.00 7.46 -52.49 -0.39 2.60 16 LS Contribution 295.15 15.07 4.45 4.45 Total: -1.00 -29.87 295.15 -5.31 -35.18 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -6.03 Total: 2.39 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -0.25 Total: -9.68 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: 0.71 Total: -50.30 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.18 Total: 17.95 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.87 -5.31 -35.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521457519.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.820 kcal (2) G-P(sol) polarization free energy of solvation -29.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds