Wall clock time and date at job start Sun Mar 29 2020 21:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47451 * 2 1 4 4 C 1.35204 * 125.97986 * 124.99501 * 3 2 1 5 5 C 1.36036 * 107.61225 * 179.97438 * 4 3 2 6 6 N 1.40049 * 126.13443 * 179.97438 * 5 4 3 7 7 C 1.36774 * 120.00225 * 0.02562 * 6 5 4 8 8 H 1.08002 * 119.99809 * 134.09254 * 7 6 5 9 9 C 1.38752 * 119.99920 * 313.81450 * 7 6 5 10 10 N 1.31641 * 119.99781 * 158.91195 * 9 7 6 11 11 Si 1.86792 * 120.00029 * 338.91291 * 9 7 6 12 12 H 1.48506 * 109.46966 * 94.78553 * 11 9 7 13 13 H 1.48495 * 109.47080 * 214.78894 * 11 9 7 14 14 H 1.48501 * 109.47326 * 334.78990 * 11 9 7 15 15 C 1.46506 * 119.99657 * 180.02562 * 6 5 4 16 16 C 1.52996 * 109.47025 * 275.42632 * 15 6 5 17 17 C 1.52998 * 109.47247 * 176.03518 * 16 15 6 18 18 C 1.53006 * 109.47274 * 296.03793 * 16 15 6 19 19 C 1.40439 * 107.72171 * 0.24632 * 5 4 3 20 20 N 1.30787 * 108.20211 * 359.58547 * 19 5 4 21 21 H 1.08997 * 109.47377 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47296 * 300.00776 * 1 2 3 23 23 H 1.09003 * 109.46593 * 60.00749 * 1 2 3 24 24 H 1.09000 * 109.47296 * 239.99224 * 2 1 3 25 25 H 1.09003 * 109.46593 * 119.99251 * 2 1 3 26 26 H 1.07999 * 126.19521 * 0.04336 * 4 3 2 27 27 H 0.97000 * 120.00120 * 180.02562 * 10 9 7 28 28 H 1.08998 * 109.46839 * 35.42639 * 15 6 5 29 29 H 1.09001 * 109.47102 * 155.42555 * 15 6 5 30 30 H 1.08998 * 109.47696 * 56.03511 * 16 15 6 31 31 H 1.09003 * 109.47045 * 64.66774 * 17 16 15 32 32 H 1.08998 * 109.47425 * 184.66329 * 17 16 15 33 33 H 1.09000 * 109.47457 * 304.67358 * 17 16 15 34 34 H 1.08991 * 109.47150 * 65.15390 * 18 16 15 35 35 H 1.09004 * 109.47229 * 185.15887 * 18 16 15 36 36 H 1.09006 * 109.46771 * 305.15765 * 18 16 15 37 37 H 1.07997 * 125.89653 * 179.75221 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8748 1.9209 0.8963 5 6 3.0739 3.2199 0.5448 6 7 3.8935 4.1394 1.2112 7 6 4.5856 3.7557 2.3267 8 1 5.6275 4.0197 2.4331 9 6 3.9477 3.0325 3.3243 10 7 4.6549 2.3150 4.1717 11 14 2.0856 3.0768 3.4647 12 1 1.5068 1.9176 2.7391 13 1 1.6955 3.0099 4.8960 14 1 1.5742 4.3381 2.8707 15 6 4.0095 5.5124 0.7133 16 6 5.0733 5.5685 -0.3849 17 6 5.1251 6.9799 -0.9732 18 6 6.4380 5.2127 0.2083 19 6 2.3052 3.4749 -0.6025 20 7 1.6803 2.3733 -0.9288 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3632 0.5137 -0.8901 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5137 0.8901 26 1 3.3210 1.4124 1.7382 27 1 4.2090 1.8091 4.8689 28 1 3.0505 5.8337 0.3069 29 1 4.2969 6.1726 1.5316 30 1 4.8221 4.8563 -1.1709 31 1 5.4570 7.6808 -0.2071 32 1 5.8231 6.9993 -1.8101 33 1 4.1324 7.2653 -1.3211 34 1 6.4288 4.1761 0.5449 35 1 7.2091 5.3413 -0.5513 36 1 6.6484 5.8674 1.0541 37 1 2.2431 4.4172 -1.1265 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000521457519.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:47 Heat of formation + Delta-G solvation = 68.634717 kcal Electronic energy + Delta-G solvation = -17704.236959 eV Core-core repulsion = 15097.022067 eV Total energy + Delta-G solvation = -2607.214893 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.91549 -38.52228 -35.63552 -34.94863 -33.38975 -30.97687 -29.25441 -28.10953 -27.54546 -24.90125 -24.21054 -21.62618 -21.31826 -20.50661 -19.46949 -17.61089 -16.91116 -16.19590 -15.98275 -15.77873 -15.38655 -15.01008 -14.62061 -14.55675 -14.18735 -13.60585 -13.50593 -13.22546 -13.01652 -12.88463 -12.87106 -12.64102 -12.29455 -12.22315 -12.09117 -11.95758 -11.51620 -11.48966 -11.35850 -10.83637 -10.24214 -9.98480 -8.33888 -7.81843 -5.75187 1.07938 1.33051 1.42057 1.49643 1.82733 2.23602 2.37127 3.01515 3.27941 3.81032 4.09904 4.12610 4.24285 4.27497 4.29273 4.41670 4.43294 4.73297 4.79666 4.84086 4.86124 4.92245 5.00478 5.05620 5.15624 5.20804 5.22241 5.24319 5.36260 5.59697 5.64624 5.69442 5.95736 6.22159 6.39747 6.94229 7.03742 7.58907 7.96077 8.84601 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.020059 B = 0.011295 C = 0.008301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.558945 B = 2478.382313 C = 3372.083549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.127 3.873 3 N -0.375 5.375 4 C -0.063 4.063 5 C 0.058 3.942 6 N -0.505 5.505 7 C -0.284 4.284 8 H 0.064 0.936 9 C 0.020 3.980 10 N -0.924 5.924 11 Si 0.929 3.071 12 H -0.259 1.259 13 H -0.309 1.309 14 H -0.280 1.280 15 C 0.136 3.864 16 C -0.106 4.106 17 C -0.135 4.135 18 C -0.130 4.130 19 C -0.011 4.011 20 N -0.297 5.297 21 H 0.104 0.896 22 H 0.038 0.962 23 H 0.062 0.938 24 H 0.096 0.904 25 H 0.094 0.906 26 H 0.148 0.852 27 H 0.268 0.732 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.030 0.970 35 H 0.057 0.943 36 H 0.043 0.957 37 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.932 1.178 -9.526 10.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.007 3.993 3 N -0.166 5.166 4 C -0.211 4.211 5 C -0.051 4.051 6 N -0.211 5.211 7 C -0.413 4.413 8 H 0.081 0.919 9 C -0.180 4.180 10 N -0.565 5.565 11 Si 0.758 3.242 12 H -0.185 1.185 13 H -0.237 1.237 14 H -0.206 1.206 15 C 0.012 3.988 16 C -0.126 4.126 17 C -0.192 4.192 18 C -0.187 4.187 19 C -0.198 4.198 20 N -0.121 5.121 21 H 0.122 0.878 22 H 0.057 0.943 23 H 0.081 0.919 24 H 0.114 0.886 25 H 0.113 0.887 26 H 0.166 0.834 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.050 0.950 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -5.658 0.505 -10.100 11.588 hybrid contribution 0.083 0.170 1.454 1.467 sum -5.576 0.675 -8.645 10.309 Atomic orbital electron populations 1.22002 0.93224 1.03975 1.01934 1.21831 0.96481 0.76707 1.04273 1.48156 1.36886 1.10372 1.21170 1.21517 1.03512 0.95422 1.00654 1.18232 1.00218 0.90621 0.96033 1.41501 1.47227 1.06408 1.26013 1.18676 0.93619 1.34007 0.94982 0.91885 1.25966 1.00538 0.96378 0.95151 1.69987 1.37351 1.29152 1.19964 0.86251 0.83664 0.79469 0.74827 1.18459 1.23705 1.20588 1.21457 0.97706 0.83466 0.96169 1.21500 0.95549 0.98082 0.97442 1.21720 1.02350 0.94570 1.00607 1.21670 0.96711 1.00530 0.99814 1.23713 0.99811 0.98580 0.97723 1.76782 1.23922 0.96944 1.14482 0.87762 0.94309 0.91930 0.88556 0.88730 0.83435 0.92285 0.92101 0.92273 0.92425 0.92518 0.91879 0.91657 0.95047 0.92440 0.93742 0.78624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.85 10.10 71.98 0.73 -3.12 16 2 C 0.13 3.75 7.23 86.38 0.62 4.37 16 3 N -0.38 -14.95 3.68 -347.25 -1.28 -16.23 16 4 C -0.06 -2.90 7.16 83.66 0.60 -2.31 16 5 C 0.06 2.64 5.12 37.85 0.19 2.84 16 6 N -0.51 -23.65 1.95 -512.70 -1.00 -24.64 16 7 C -0.28 -15.42 8.63 84.05 0.73 -14.70 16 8 H 0.06 3.72 6.80 -2.91 -0.02 3.70 16 9 C 0.02 1.11 4.07 84.84 0.35 1.46 16 10 N -0.92 -54.55 13.97 21.64 0.30 -54.25 16 11 Si 0.93 46.55 24.60 68.60 1.69 48.24 16 12 H -0.26 -12.52 5.86 99.48 0.58 -11.93 16 13 H -0.31 -15.57 7.11 99.48 0.71 -14.86 16 14 H -0.28 -14.34 7.11 99.48 0.71 -13.64 16 15 C 0.14 5.14 4.80 86.38 0.41 5.55 16 16 C -0.11 -3.40 3.11 -10.79 -0.03 -3.43 16 17 C -0.13 -3.22 9.19 71.98 0.66 -2.55 16 18 C -0.13 -4.56 8.30 71.98 0.60 -3.96 16 19 C -0.01 -0.42 11.16 85.38 0.95 0.53 16 20 N -0.30 -11.79 12.40 -56.67 -0.70 -12.49 16 21 H 0.10 1.82 8.14 -2.39 -0.02 1.81 16 22 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 25 H 0.09 2.62 8.07 -2.39 -0.02 2.60 16 26 H 0.15 7.51 5.82 -2.91 -0.02 7.49 16 27 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 28 H 0.06 2.06 7.17 -2.39 -0.02 2.05 16 29 H 0.06 2.29 8.00 -2.39 -0.02 2.27 16 30 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.03 1.33 6.56 -2.39 -0.02 1.31 16 35 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.04 1.55 8.14 -2.38 -0.02 1.54 16 37 H 0.20 6.36 7.46 -2.91 -0.02 6.34 16 Total: -1.00 -64.90 295.15 5.72 -59.18 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 0.90 Total: 15.53 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: 5.81 Total: -15.33 kcal Atomic # 7 Polarization: -104.94 SS G_CDS: -2.68 Total: -107.62 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 1.69 Total: 48.24 kcal Total: -64.90 5.72 -59.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521457519.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.810 kcal (2) G-P(sol) polarization free energy of solvation -64.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds