Wall clock time and date at job start Sun Mar 29 2020 22:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.47173 * 2 1 4 4 C 1.31004 * 119.99962 * 126.32977 * 3 2 1 5 5 C 1.50703 * 119.99918 * 7.54848 * 4 3 2 6 6 C 1.52993 * 109.47641 * 127.61471 * 5 4 3 7 7 N 1.46893 * 109.47378 * 180.02562 * 6 5 4 8 8 C 1.46844 * 111.00142 * 169.99876 * 7 6 5 9 9 C 1.53035 * 109.51553 * 185.84146 * 8 7 6 10 10 C 1.53121 * 109.28010 * 300.80470 * 9 8 7 11 11 C 1.50700 * 109.52293 * 177.57046 * 10 9 8 12 12 H 1.07999 * 120.00116 * 240.32611 * 11 10 9 13 13 C 1.37872 * 120.00195 * 60.32951 * 11 10 9 14 14 N 1.31517 * 120.00208 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00161 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47301 * 59.99880 * 15 13 11 17 17 H 1.48499 * 109.47469 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47387 * 299.99951 * 15 13 11 19 19 C 1.53116 * 109.15280 * 57.66912 * 10 9 8 20 20 C 1.46850 * 110.99762 * 294.20724 * 7 6 5 21 21 H 1.09005 * 109.47016 * 59.99907 * 1 2 3 22 22 H 1.08996 * 109.47286 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46827 * 299.99941 * 1 2 3 24 24 H 1.09002 * 109.47207 * 239.99731 * 2 1 3 25 25 H 1.08999 * 109.47168 * 120.00490 * 2 1 3 26 26 H 1.07997 * 120.00127 * 306.33046 * 3 2 1 27 27 H 1.07998 * 120.00169 * 187.54257 * 4 3 2 28 28 H 1.09001 * 109.46852 * 7.60852 * 5 4 3 29 29 H 1.09004 * 109.46570 * 247.61722 * 5 4 3 30 30 H 1.09003 * 109.47040 * 59.99557 * 6 5 4 31 31 H 1.09002 * 109.46960 * 300.00146 * 6 5 4 32 32 H 1.09001 * 109.46413 * 305.85290 * 8 7 6 33 33 H 1.09005 * 109.46179 * 65.83444 * 8 7 6 34 34 H 1.09003 * 109.50422 * 60.75975 * 9 8 7 35 35 H 1.09001 * 109.50267 * 180.87547 * 9 8 7 36 36 H 1.09003 * 109.53122 * 297.76498 * 10 9 8 37 37 H 0.96998 * 120.00542 * 179.97438 * 14 13 11 38 38 H 1.08997 * 109.50952 * 182.39743 * 19 10 9 39 39 H 1.09003 * 109.53536 * 62.29920 * 19 10 9 40 40 H 1.08999 * 109.46304 * 294.17758 * 20 7 6 41 41 H 1.08998 * 109.46231 * 54.15702 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8844 1.8143 0.9140 5 6 3.4925 0.8104 1.8593 6 6 5.0161 0.9477 1.8382 7 7 5.6088 -0.0312 2.7592 8 6 7.0665 -0.0944 2.5933 9 6 7.6313 -1.2220 3.4602 10 6 7.2768 -0.9586 4.9263 11 6 7.7787 -2.0961 5.7780 12 1 7.0833 -2.6830 6.3595 13 6 9.1258 -2.3874 5.8148 14 7 9.9728 -1.6730 5.1063 15 14 9.7479 -3.7978 6.8699 16 1 9.1187 -5.0662 6.4219 17 1 11.2230 -3.9033 6.7357 18 1 9.3965 -3.5458 8.2905 19 6 5.7557 -0.8491 5.0636 20 6 5.2451 0.2676 4.1502 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.6899 2.1146 -0.7535 27 1 3.1511 2.8580 0.9900 28 1 3.2140 -0.1965 1.5483 29 1 3.1251 0.9934 2.8691 30 1 5.2945 1.9547 2.1492 31 1 5.3834 0.7647 0.8284 32 1 7.3050 -0.2862 1.5472 33 1 7.5082 0.8543 2.8986 34 1 7.2003 -2.1729 3.1465 35 1 8.7149 -1.2587 3.3489 36 1 7.7399 -0.0270 5.2515 37 1 10.9206 -1.8777 5.1325 38 1 5.4992 -0.6194 6.0977 39 1 5.2948 -1.7940 4.7756 40 1 5.6952 1.2146 4.4479 41 1 4.1607 0.3384 4.2348 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000546640235.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:45 Heat of formation + Delta-G solvation = -3.418498 kcal Electronic energy + Delta-G solvation = -16958.907025 eV Core-core repulsion = 14452.108014 eV Total energy + Delta-G solvation = -2506.799011 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.43505 -36.65030 -34.07511 -32.13365 -30.83629 -29.77775 -28.04137 -25.44587 -23.39711 -22.89812 -21.82518 -20.83189 -18.59658 -18.21972 -16.34604 -15.89183 -15.19637 -14.62321 -14.48816 -14.10631 -13.85052 -13.64917 -13.09319 -12.56664 -12.47384 -12.43188 -12.15639 -11.93811 -11.48703 -11.29867 -11.05967 -11.01212 -10.87695 -10.61845 -10.36240 -10.28842 -10.15915 -9.91696 -9.38690 -9.05493 -8.78431 -8.66771 -8.25061 -7.68506 -5.93413 -3.98760 2.18727 3.35359 3.39699 3.42649 4.44717 4.48845 4.78665 4.98973 5.19969 5.24426 5.27395 5.36509 5.37135 5.53758 5.67989 5.77360 5.79740 5.85173 5.93731 6.00840 6.11060 6.13486 6.18004 6.25078 6.32019 6.40600 6.64917 6.66231 6.70273 6.86181 6.91180 7.13376 7.22346 7.49288 7.67644 7.76562 7.88489 8.09840 8.20548 8.52694 9.04805 9.65365 11.12745 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.047833 B = 0.004281 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.233617 B = 6538.493385 C = 6742.460425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 C -0.165 4.165 4 C -0.152 4.152 5 C -0.099 4.099 6 C 0.061 3.939 7 N -0.537 5.537 8 C 0.058 3.942 9 C -0.104 4.104 10 C 0.048 3.952 11 C -0.510 4.510 12 H 0.054 0.946 13 C 0.060 3.940 14 N -0.893 5.893 15 Si 0.890 3.110 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.278 1.278 19 C -0.106 4.106 20 C 0.057 3.943 21 H 0.051 0.949 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.025 0.975 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.021 0.979 34 H 0.043 0.957 35 H 0.092 0.908 36 H 0.020 0.980 37 H 0.259 0.741 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.022 0.978 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.375 5.639 -8.878 17.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C -0.183 4.183 4 C -0.170 4.170 5 C -0.136 4.136 6 C -0.067 4.067 7 N -0.261 5.261 8 C -0.069 4.069 9 C -0.142 4.142 10 C 0.029 3.971 11 C -0.549 4.549 12 H 0.072 0.928 13 C -0.140 4.140 14 N -0.532 5.532 15 Si 0.718 3.282 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.204 1.204 19 C -0.144 4.144 20 C -0.070 4.070 21 H 0.070 0.930 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.085 0.915 25 H 0.099 0.901 26 H 0.122 0.878 27 H 0.123 0.877 28 H 0.102 0.898 29 H 0.088 0.912 30 H 0.043 0.957 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.039 0.961 34 H 0.062 0.938 35 H 0.110 0.890 36 H 0.038 0.962 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.040 0.960 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.353 5.184 -9.026 16.930 hybrid contribution 0.771 0.232 0.672 1.049 sum -12.582 5.416 -8.354 16.044 Atomic orbital electron populations 1.21688 0.95433 1.01490 1.01628 1.20826 0.95766 0.94833 1.03100 1.22749 0.99301 0.97516 0.98775 1.22838 0.97801 0.99217 0.97158 1.20900 0.94960 0.98941 0.98774 1.21972 0.93808 0.93713 0.97230 1.61987 1.11628 1.47514 1.05017 1.22261 0.85570 0.99466 0.99635 1.21662 1.02204 0.94615 0.95744 1.18678 0.89025 0.96746 0.92618 1.21186 0.92205 1.15203 1.26272 0.92817 1.24970 0.96999 0.96416 0.95652 1.69869 1.02610 1.39848 1.40885 0.86694 0.77541 0.82996 0.80952 1.20308 1.21397 1.20393 1.21678 0.99742 0.96769 0.96244 1.22169 0.98787 0.97777 0.88285 0.93017 0.92662 0.92761 0.91478 0.90106 0.87752 0.87691 0.89763 0.91211 0.95693 0.91390 0.92731 0.96066 0.93833 0.89007 0.96219 0.93078 0.93315 0.92529 0.95993 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.89 37.16 0.37 -0.85 16 2 C -0.11 -1.06 6.04 -27.89 -0.17 -1.23 16 3 C -0.17 -1.69 9.51 -36.03 -0.34 -2.03 16 4 C -0.15 -1.69 9.51 -36.03 -0.34 -2.03 16 5 C -0.10 -1.27 5.23 -27.88 -0.15 -1.41 16 6 C 0.06 0.91 4.94 -3.83 -0.02 0.89 16 7 N -0.54 -9.81 4.66 -234.67 -1.09 -10.90 16 8 C 0.06 1.17 5.46 -3.84 -0.02 1.15 16 9 C -0.10 -2.51 5.12 -26.65 -0.14 -2.64 16 10 C 0.05 1.21 2.16 -91.65 -0.20 1.02 16 11 C -0.51 -14.23 8.56 -34.44 -0.29 -14.52 16 12 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 13 C 0.06 1.69 5.31 -17.82 -0.09 1.59 16 14 N -0.89 -25.72 11.37 55.43 0.63 -25.09 16 15 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 C -0.11 -2.29 5.32 -26.65 -0.14 -2.43 16 20 C 0.06 1.06 5.29 -3.83 -0.02 1.04 16 21 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 22 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.08 0.86 5.28 -51.93 -0.27 0.59 16 26 H 0.10 0.94 8.06 -52.49 -0.42 0.51 16 27 H 0.11 1.08 8.06 -52.49 -0.42 0.66 16 28 H 0.08 1.11 5.30 -51.93 -0.28 0.83 16 29 H 0.07 0.91 6.43 -51.93 -0.33 0.58 16 30 H 0.02 0.37 8.12 -51.93 -0.42 -0.05 16 31 H 0.07 0.99 7.99 -51.93 -0.41 0.57 16 32 H 0.05 1.02 8.01 -51.93 -0.42 0.60 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.09 2.45 6.17 -51.93 -0.32 2.13 16 36 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.96 6.21 -51.93 -0.32 0.64 16 LS Contribution 316.35 15.07 4.77 4.77 Total: -1.00 -28.17 316.35 -9.67 -37.83 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -7.39 Total: -1.64 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: -1.56 Total: -21.45 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: -0.46 Total: -36.00 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.17 -9.67 -37.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546640235.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.416 kcal (2) G-P(sol) polarization free energy of solvation -28.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds