Wall clock time and date at job start Sun Mar 29 2020 22:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47143 * 2 1 4 4 C 1.50695 * 109.47217 * 119.99822 * 2 1 3 5 5 H 1.07997 * 120.00099 * 114.27540 * 4 2 1 6 6 C 1.37883 * 120.00023 * 294.27623 * 4 2 1 7 7 N 1.31507 * 119.99989 * 209.30455 * 6 4 2 8 8 Si 1.86792 * 119.99871 * 29.30556 * 6 4 2 9 9 H 1.48505 * 109.47122 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.47479 * 60.00242 * 8 6 4 11 11 H 1.48502 * 109.47287 * 300.00197 * 8 6 4 12 12 C 1.53000 * 109.46966 * 240.00028 * 2 1 3 13 13 N 1.46901 * 109.47343 * 60.00288 * 12 2 1 14 14 C 1.46904 * 110.99896 * 179.97438 * 13 12 2 15 15 H 1.08997 * 109.35339 * 35.00227 * 14 13 12 16 16 C 1.52880 * 109.35698 * 275.27412 * 14 13 12 17 17 C 1.53262 * 108.59622 * 185.13806 * 16 14 13 18 18 C 1.52877 * 108.46574 * 74.63177 * 17 16 14 19 19 C 1.52066 * 110.51713 * 305.07840 * 18 17 16 20 20 H 1.09000 * 114.26742 * 166.23003 * 19 18 17 21 21 C 1.52309 * 119.83881 * 310.44870 * 19 18 17 22 22 C 1.52075 * 120.02054 * 21.69787 * 19 18 17 23 23 H 1.08993 * 116.54071 * 143.01401 * 22 19 18 24 24 H 1.08998 * 109.47085 * 295.22392 * 1 2 3 25 25 H 1.09004 * 109.47111 * 55.22151 * 1 2 3 26 26 H 1.08994 * 109.47422 * 175.21983 * 1 2 3 27 27 H 1.08995 * 109.47447 * 185.25077 * 3 2 1 28 28 H 1.09007 * 109.46600 * 305.24896 * 3 2 1 29 29 H 1.08999 * 109.46869 * 65.24625 * 3 2 1 30 30 H 0.97000 * 119.99953 * 354.99310 * 7 6 4 31 31 H 1.09008 * 109.46708 * 179.97438 * 12 2 1 32 32 H 1.08991 * 109.47113 * 299.99561 * 12 2 1 33 33 H 1.00904 * 110.99710 * 303.95170 * 13 12 2 34 34 H 1.09000 * 109.61740 * 305.00586 * 16 14 13 35 35 H 1.09002 * 109.61406 * 65.54794 * 16 14 13 36 36 H 1.09007 * 109.70884 * 314.92829 * 17 16 14 37 37 H 1.08998 * 109.80657 * 194.39850 * 17 16 14 38 38 H 1.09002 * 109.26916 * 184.80930 * 18 17 16 39 39 H 1.09002 * 109.26687 * 65.34782 * 18 17 16 40 40 H 1.09002 * 117.53644 * 2.43818 * 21 19 18 41 41 H 1.09002 * 117.59806 * 217.16806 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.5749 -1.6392 1.1341 6 6 1.7993 -0.1744 2.4793 7 7 2.6464 -0.3991 3.4598 8 14 0.2803 0.8707 2.7785 9 1 0.2622 1.3242 4.1925 10 1 -0.9367 0.0663 2.5006 11 1 0.3080 2.0529 1.8803 12 6 2.0400 -0.7212 -1.2493 13 7 1.5503 -0.0287 -2.4487 14 6 2.0219 -0.6946 -3.6704 15 1 2.0608 -1.7709 -3.5030 16 6 3.4207 -0.1847 -4.0177 17 6 3.8426 -0.7914 -5.3604 18 6 3.0767 -0.0792 -6.4755 19 6 1.5790 -0.1481 -6.2216 20 1 0.9886 0.5306 -6.8372 21 6 0.9271 -1.4843 -5.8908 22 6 1.0563 -0.3948 -4.8149 23 1 0.1476 0.1368 -4.5328 24 1 -0.3633 0.4379 0.9297 25 1 -0.3633 0.5862 -0.8441 26 1 -0.3634 -1.0240 -0.0856 27 1 3.1259 1.4440 -0.0940 28 1 1.6019 1.9827 -0.8393 29 1 1.7554 1.9285 0.9332 30 1 3.3958 -1.0002 3.3251 31 1 3.1300 -0.7208 -1.2494 32 1 1.6767 -1.7488 -1.2492 33 1 0.5438 0.0414 -2.4402 34 1 3.4054 0.9026 -4.0938 35 1 4.1243 -0.4902 -3.2433 36 1 3.6042 -1.8549 -5.3743 37 1 4.9139 -0.6545 -5.5072 38 1 3.3022 -0.5572 -7.4288 39 1 3.3872 0.9649 -6.5151 40 1 1.5772 -2.3551 -5.8069 41 1 -0.0661 -1.6759 -6.2971 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000556782416.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:06 Heat of formation + Delta-G solvation = 15.410293 kcal Electronic energy + Delta-G solvation = -17695.488991 eV Core-core repulsion = 15189.506458 eV Total energy + Delta-G solvation = -2505.982534 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.71832 -36.90071 -33.89120 -32.78712 -31.50767 -28.55484 -26.16581 -25.29102 -24.34090 -23.09533 -22.14406 -21.00326 -18.81452 -18.28841 -16.81134 -16.18682 -15.20319 -14.58042 -14.43600 -14.21164 -13.78680 -13.29663 -13.20539 -12.75873 -12.42315 -12.19867 -12.08546 -11.72818 -11.65105 -11.46393 -11.03057 -10.97940 -10.86400 -10.36657 -10.21063 -10.03712 -9.86391 -9.83286 -9.67686 -9.58869 -8.91107 -8.72999 -7.92612 -7.79770 -6.45276 -3.96500 3.43341 3.45390 3.69166 3.71303 4.43912 4.53111 4.61379 4.75370 5.00857 5.05781 5.22331 5.26313 5.33978 5.41857 5.53358 5.62648 5.70890 5.76638 5.96186 5.99263 6.07141 6.09257 6.15327 6.19300 6.29852 6.33767 6.36997 6.50151 6.59448 6.67875 6.83821 6.89287 7.02071 7.14435 7.50801 7.63018 7.71864 7.95875 8.37401 8.42676 8.97883 9.67499 10.94103 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.045316 B = 0.005723 C = 0.005441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.733871 B = 4891.207928 C = 5144.821559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.048 3.952 3 C -0.127 4.127 4 C -0.609 4.609 5 H 0.053 0.947 6 C 0.038 3.962 7 N -0.895 5.895 8 Si 1.058 2.942 9 H -0.302 1.302 10 H -0.289 1.289 11 H -0.275 1.275 12 C 0.086 3.914 13 N -0.684 5.684 14 C 0.119 3.881 15 H 0.039 0.961 16 C -0.105 4.105 17 C -0.122 4.122 18 C -0.087 4.087 19 C -0.137 4.137 20 H 0.095 0.905 21 C -0.186 4.186 22 C -0.142 4.142 23 H 0.104 0.896 24 H 0.040 0.960 25 H 0.031 0.969 26 H 0.041 0.959 27 H 0.037 0.963 28 H 0.032 0.968 29 H 0.043 0.957 30 H 0.268 0.732 31 H 0.060 0.940 32 H 0.015 0.985 33 H 0.336 0.664 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.039 0.372 -18.289 18.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.046 3.954 3 C -0.184 4.184 4 C -0.646 4.646 5 H 0.071 0.929 6 C -0.168 4.168 7 N -0.527 5.527 8 Si 0.892 3.108 9 H -0.230 1.230 10 H -0.218 1.218 11 H -0.202 1.202 12 C -0.042 4.042 13 N -0.316 5.316 14 C 0.009 3.991 15 H 0.057 0.943 16 C -0.144 4.144 17 C -0.160 4.160 18 C -0.124 4.124 19 C -0.156 4.156 20 H 0.113 0.887 21 C -0.223 4.223 22 C -0.161 4.161 23 H 0.122 0.878 24 H 0.058 0.942 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.034 0.966 33 H 0.155 0.845 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.111 0.889 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.279 1.736 -17.127 17.365 hybrid contribution 0.090 -1.891 -1.162 2.221 sum -2.189 -0.154 -18.289 18.420 Atomic orbital electron populations 1.22353 0.99924 0.99595 0.98830 1.18391 0.90640 0.93348 0.93016 1.22007 0.99795 0.97506 0.99096 1.21728 1.40748 1.11043 0.91118 0.92917 1.25692 1.00010 0.98197 0.92916 1.70882 1.12321 1.31874 1.37648 0.84055 0.75939 0.76562 0.74234 1.22989 1.21798 1.20209 1.21996 0.99306 0.94092 0.88791 1.60686 1.15892 1.53960 1.01105 1.20963 0.93760 0.95678 0.88733 0.94267 1.21546 0.95766 1.01309 0.95745 1.21614 0.99430 0.99746 0.95258 1.20842 0.92384 1.00914 0.98271 1.21787 0.96380 0.99250 0.98152 0.88685 1.23128 1.01756 0.92949 1.04469 1.22435 1.01069 1.02468 0.90080 0.87804 0.94196 0.94985 0.93947 0.94383 0.94851 0.93834 0.92153 0.92107 0.96643 0.84490 0.90939 0.91991 0.92250 0.91820 0.92017 0.91482 0.88867 0.89203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 7.52 37.16 0.28 -2.98 16 2 C 0.05 1.12 0.57 -155.66 -0.09 1.03 16 3 C -0.13 -2.93 7.92 37.16 0.29 -2.63 16 4 C -0.61 -17.09 8.42 -34.44 -0.29 -17.38 16 5 H 0.05 1.60 7.99 -52.49 -0.42 1.18 16 6 C 0.04 1.11 5.06 -17.82 -0.09 1.02 16 7 N -0.89 -27.56 13.69 55.43 0.76 -26.80 16 8 Si 1.06 26.25 23.53 -169.99 -4.00 22.25 16 9 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 10 H -0.29 -6.82 6.69 56.52 0.38 -6.44 16 11 H -0.27 -6.36 5.73 56.52 0.32 -6.03 16 12 C 0.09 1.79 4.38 -3.82 -0.02 1.77 16 13 N -0.68 -11.76 5.62 -106.94 -0.60 -12.36 16 14 C 0.12 1.74 2.44 -67.92 -0.17 1.57 16 15 H 0.04 0.61 7.71 -51.93 -0.40 0.21 16 16 C -0.11 -1.46 5.36 -26.66 -0.14 -1.60 16 17 C -0.12 -1.36 5.71 -26.66 -0.15 -1.51 16 18 C -0.09 -0.87 5.92 -27.27 -0.16 -1.03 16 19 C -0.14 -1.47 6.00 -91.92 -0.55 -2.02 16 20 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 21 C -0.19 -1.99 9.66 -26.75 -0.26 -2.25 16 22 C -0.14 -1.76 5.69 -90.90 -0.52 -2.28 16 23 H 0.10 1.29 7.67 -51.93 -0.40 0.89 16 24 H 0.04 0.91 2.25 -51.93 -0.12 0.79 16 25 H 0.03 0.60 6.82 -51.93 -0.35 0.24 16 26 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.03 0.69 7.77 -51.93 -0.40 0.29 16 29 H 0.04 1.05 4.40 -51.93 -0.23 0.82 16 30 H 0.27 8.21 8.73 -40.82 -0.36 7.86 16 31 H 0.06 1.32 7.52 -51.92 -0.39 0.93 16 32 H 0.02 0.33 8.05 -51.93 -0.42 -0.09 16 33 H 0.34 5.55 6.21 -39.29 -0.24 5.31 16 34 H 0.07 1.05 8.04 -51.93 -0.42 0.64 16 35 H 0.06 0.93 7.58 -51.93 -0.39 0.54 16 36 H 0.06 0.66 7.11 -51.93 -0.37 0.29 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.09 1.00 7.26 -51.93 -0.38 0.63 16 41 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 299.13 15.07 4.51 4.51 Total: -1.00 -29.07 299.13 -8.34 -37.41 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -7.14 Total: 3.31 kcal Atomic # 6 Polarization: -26.45 SS G_CDS: -1.86 Total: -28.31 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.16 Total: -39.16 kcal Atomic # 14 Polarization: 26.25 SS G_CDS: -4.00 Total: 22.25 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.07 -8.34 -37.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556782416.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.818 kcal (2) G-P(sol) polarization free energy of solvation -29.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds