Wall clock time and date at job start Sun Mar 29 2020 22:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47143 * 2 1 4 4 C 1.50695 * 109.47217 * 119.99822 * 2 1 3 5 5 H 1.07997 * 120.00099 * 114.27540 * 4 2 1 6 6 C 1.37883 * 120.00023 * 294.27623 * 4 2 1 7 7 N 1.31507 * 119.99989 * 209.30455 * 6 4 2 8 8 Si 1.86792 * 119.99871 * 29.30556 * 6 4 2 9 9 H 1.48505 * 109.47122 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.47479 * 60.00242 * 8 6 4 11 11 H 1.48502 * 109.47287 * 300.00197 * 8 6 4 12 12 C 1.53000 * 109.46966 * 240.00028 * 2 1 3 13 13 N 1.46901 * 109.47343 * 60.00288 * 12 2 1 14 14 C 1.46904 * 110.99896 * 179.97438 * 13 12 2 15 15 H 1.08997 * 109.35339 * 35.00227 * 14 13 12 16 16 C 1.52880 * 109.35698 * 275.27412 * 14 13 12 17 17 C 1.53262 * 108.59622 * 185.13806 * 16 14 13 18 18 C 1.52877 * 108.46574 * 74.63177 * 17 16 14 19 19 C 1.52066 * 110.51713 * 305.07840 * 18 17 16 20 20 H 1.09000 * 114.26742 * 166.23003 * 19 18 17 21 21 C 1.52309 * 119.83881 * 310.44870 * 19 18 17 22 22 C 1.52075 * 120.02054 * 21.69787 * 19 18 17 23 23 H 1.08993 * 116.54071 * 143.01401 * 22 19 18 24 24 H 1.08998 * 109.47085 * 295.22392 * 1 2 3 25 25 H 1.09004 * 109.47111 * 55.22151 * 1 2 3 26 26 H 1.08994 * 109.47422 * 175.21983 * 1 2 3 27 27 H 1.08995 * 109.47447 * 185.25077 * 3 2 1 28 28 H 1.09007 * 109.46600 * 305.24896 * 3 2 1 29 29 H 1.08999 * 109.46869 * 65.24625 * 3 2 1 30 30 H 0.97000 * 119.99953 * 354.99310 * 7 6 4 31 31 H 1.09008 * 109.46708 * 179.97438 * 12 2 1 32 32 H 1.08991 * 109.47113 * 299.99561 * 12 2 1 33 33 H 1.00904 * 110.99710 * 303.95170 * 13 12 2 34 34 H 1.09000 * 109.61740 * 305.00586 * 16 14 13 35 35 H 1.09002 * 109.61406 * 65.54794 * 16 14 13 36 36 H 1.09007 * 109.70884 * 314.92829 * 17 16 14 37 37 H 1.08998 * 109.80657 * 194.39850 * 17 16 14 38 38 H 1.09002 * 109.26916 * 184.80930 * 18 17 16 39 39 H 1.09002 * 109.26687 * 65.34782 * 18 17 16 40 40 H 1.09002 * 117.53644 * 2.43818 * 21 19 18 41 41 H 1.09002 * 117.59806 * 217.16806 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.5749 -1.6392 1.1341 6 6 1.7993 -0.1744 2.4793 7 7 2.6464 -0.3991 3.4598 8 14 0.2803 0.8707 2.7785 9 1 0.2622 1.3242 4.1925 10 1 -0.9367 0.0663 2.5006 11 1 0.3080 2.0529 1.8803 12 6 2.0400 -0.7212 -1.2493 13 7 1.5503 -0.0287 -2.4487 14 6 2.0219 -0.6946 -3.6704 15 1 2.0608 -1.7709 -3.5030 16 6 3.4207 -0.1847 -4.0177 17 6 3.8426 -0.7914 -5.3604 18 6 3.0767 -0.0792 -6.4755 19 6 1.5790 -0.1481 -6.2216 20 1 0.9886 0.5306 -6.8372 21 6 0.9271 -1.4843 -5.8908 22 6 1.0563 -0.3948 -4.8149 23 1 0.1476 0.1368 -4.5328 24 1 -0.3633 0.4379 0.9297 25 1 -0.3633 0.5862 -0.8441 26 1 -0.3634 -1.0240 -0.0856 27 1 3.1259 1.4440 -0.0940 28 1 1.6019 1.9827 -0.8393 29 1 1.7554 1.9285 0.9332 30 1 3.3958 -1.0002 3.3251 31 1 3.1300 -0.7208 -1.2494 32 1 1.6767 -1.7488 -1.2492 33 1 0.5438 0.0414 -2.4402 34 1 3.4054 0.9026 -4.0938 35 1 4.1243 -0.4902 -3.2433 36 1 3.6042 -1.8549 -5.3743 37 1 4.9139 -0.6545 -5.5072 38 1 3.3022 -0.5572 -7.4288 39 1 3.3872 0.9649 -6.5151 40 1 1.5772 -2.3551 -5.8069 41 1 -0.0661 -1.6759 -6.2971 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000556782416.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:06 Heat of formation + Delta-G solvation = -2.417380 kcal Electronic energy + Delta-G solvation = -17696.262057 eV Core-core repulsion = 15189.506458 eV Total energy + Delta-G solvation = -2506.755600 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.72780 -38.59691 -35.45443 -33.89277 -33.39556 -29.77793 -27.95359 -26.91531 -26.17204 -24.28174 -23.30280 -21.98649 -20.66060 -19.37422 -18.74567 -17.39256 -16.63703 -16.16388 -15.91504 -15.27500 -15.07947 -14.78274 -14.52755 -14.23764 -13.99232 -13.91199 -13.54598 -13.35661 -13.15764 -12.66255 -12.35582 -12.27612 -12.01503 -11.89107 -11.84641 -11.72546 -11.56287 -11.16930 -10.97890 -10.76447 -10.66386 -10.49663 -10.14621 -9.24486 -8.75894 -6.27531 1.44508 1.50206 1.74126 2.47718 2.84110 3.01242 3.25408 3.66938 3.85968 4.07691 4.14646 4.25910 4.28014 4.32891 4.37542 4.46554 4.47979 4.58538 4.67803 4.78884 4.86364 4.88339 4.91351 5.00510 5.08686 5.10479 5.14708 5.17716 5.20088 5.29304 5.30286 5.33280 5.41200 5.47262 5.63297 5.85443 6.03634 6.15941 6.30004 6.60953 6.66330 7.45046 8.61890 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.045316 B = 0.005723 C = 0.005441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.733871 B = 4891.207928 C = 5144.821559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.040 3.960 3 C -0.120 4.120 4 C -0.612 4.612 5 H 0.011 0.989 6 C -0.011 4.011 7 N -0.929 5.929 8 Si 1.093 2.907 9 H -0.310 1.310 10 H -0.266 1.266 11 H -0.243 1.243 12 C 0.103 3.897 13 N -0.679 5.679 14 C 0.119 3.881 15 H 0.026 0.974 16 C -0.105 4.105 17 C -0.118 4.118 18 C -0.086 4.086 19 C -0.128 4.128 20 H 0.111 0.889 21 C -0.178 4.178 22 C -0.160 4.160 23 H 0.107 0.893 24 H 0.034 0.966 25 H 0.068 0.932 26 H 0.043 0.957 27 H 0.022 0.978 28 H 0.061 0.939 29 H 0.032 0.968 30 H 0.253 0.747 31 H 0.040 0.960 32 H 0.004 0.996 33 H 0.343 0.657 34 H 0.066 0.934 35 H 0.038 0.962 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.935 1.606 -21.057 21.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.039 3.961 3 C -0.177 4.177 4 C -0.649 4.649 5 H 0.030 0.970 6 C -0.210 4.210 7 N -0.563 5.563 8 Si 0.920 3.080 9 H -0.239 1.239 10 H -0.193 1.193 11 H -0.168 1.168 12 C -0.027 4.027 13 N -0.312 5.312 14 C 0.010 3.990 15 H 0.044 0.956 16 C -0.143 4.143 17 C -0.156 4.156 18 C -0.123 4.123 19 C -0.147 4.147 20 H 0.129 0.871 21 C -0.215 4.215 22 C -0.178 4.178 23 H 0.125 0.875 24 H 0.052 0.948 25 H 0.086 0.914 26 H 0.062 0.938 27 H 0.041 0.959 28 H 0.079 0.921 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.022 0.978 33 H 0.163 0.837 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.108 0.892 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.175 2.961 -19.938 20.584 hybrid contribution 0.783 -2.365 -0.344 2.515 sum -3.392 0.596 -20.282 20.572 Atomic orbital electron populations 1.22258 0.97632 1.00496 1.00075 1.18391 0.92492 0.93290 0.91950 1.21913 0.99007 0.97176 0.99619 1.21991 1.39695 1.09753 0.93504 0.97026 1.27059 1.01728 0.99470 0.92774 1.71016 1.13131 1.33441 1.38752 0.83651 0.73297 0.76715 0.74319 1.23914 1.19296 1.16828 1.21616 0.97968 0.93472 0.89613 1.60615 1.16335 1.53540 1.00663 1.20988 0.94840 0.94680 0.88537 0.95591 1.21523 0.94943 1.01015 0.96816 1.21582 1.00351 0.99616 0.94046 1.20873 0.91790 1.01253 0.98418 1.21914 0.96922 0.99326 0.96511 0.87121 1.23184 1.02578 0.92739 1.02964 1.22320 1.00871 1.04568 0.90080 0.87468 0.94751 0.91370 0.93797 0.95903 0.92054 0.94863 0.93817 0.94185 0.97812 0.83699 0.91490 0.94297 0.92330 0.90789 0.90109 0.90965 0.89153 0.87704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.00 7.52 71.98 0.54 -5.46 16 2 C 0.04 1.86 0.57 -52.93 -0.03 1.83 16 3 C -0.12 -5.36 7.92 71.98 0.57 -4.79 16 4 C -0.61 -35.25 8.42 25.60 0.22 -35.03 16 5 H 0.01 0.73 7.99 -2.91 -0.02 0.71 16 6 C -0.01 -0.63 5.06 84.66 0.43 -0.20 16 7 N -0.93 -59.21 13.69 21.45 0.29 -58.91 16 8 Si 1.09 51.90 23.53 68.60 1.61 53.52 16 9 H -0.31 -15.11 7.11 99.48 0.71 -14.40 16 10 H -0.27 -11.58 6.69 99.48 0.67 -10.91 16 11 H -0.24 -10.28 5.73 99.48 0.57 -9.71 16 12 C 0.10 4.26 4.38 86.30 0.38 4.64 16 13 N -0.68 -22.35 5.62 -492.26 -2.77 -25.11 16 14 C 0.12 3.35 2.44 44.78 0.11 3.46 16 15 H 0.03 0.81 7.71 -2.39 -0.02 0.79 16 16 C -0.10 -2.83 5.36 30.64 0.16 -2.66 16 17 C -0.12 -2.41 5.71 30.64 0.17 -2.24 16 18 C -0.09 -1.46 5.92 30.25 0.18 -1.28 16 19 C -0.13 -2.31 6.00 -11.64 -0.07 -2.38 16 20 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 21 C -0.18 -3.27 9.66 30.58 0.30 -2.98 16 22 C -0.16 -3.56 5.69 -10.97 -0.06 -3.62 16 23 H 0.11 2.33 7.67 -2.39 -0.02 2.32 16 24 H 0.03 1.44 2.25 -2.39 -0.01 1.44 16 25 H 0.07 2.27 6.82 -2.39 -0.02 2.26 16 26 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 2.38 7.77 -2.38 -0.02 2.36 16 29 H 0.03 1.53 4.40 -2.39 -0.01 1.52 16 30 H 0.25 16.33 8.73 -92.71 -0.81 15.52 16 31 H 0.04 1.80 7.52 -2.38 -0.02 1.78 16 32 H 0.00 0.16 8.05 -2.39 -0.02 0.14 16 33 H 0.34 10.41 6.21 -89.69 -0.56 9.85 16 34 H 0.07 1.87 8.04 -2.39 -0.02 1.85 16 35 H 0.04 1.20 7.58 -2.39 -0.02 1.18 16 36 H 0.06 1.21 7.11 -2.38 -0.02 1.19 16 37 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.09 1.73 7.26 -2.39 -0.02 1.71 16 41 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -64.27 299.13 2.26 -62.01 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.22 Total: 19.22 kcal Atomic # 6 Polarization: -53.62 SS G_CDS: 2.89 Total: -50.72 kcal Atomic # 7 Polarization: -81.55 SS G_CDS: -2.47 Total: -84.03 kcal Atomic # 14 Polarization: 51.90 SS G_CDS: 1.61 Total: 53.52 kcal Total: -64.27 2.26 -62.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556782416.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.592 kcal (2) G-P(sol) polarization free energy of solvation -64.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds