Wall clock time and date at job start Sun Mar 29 2020 22:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47370 * 2 1 4 4 C 1.50699 * 109.47624 * 239.99815 * 2 1 3 5 5 H 1.08006 * 119.99850 * 241.36659 * 4 2 1 6 6 C 1.37871 * 120.00205 * 61.35697 * 4 2 1 7 7 N 1.31510 * 120.00379 * 193.96934 * 6 4 2 8 8 Si 1.86810 * 119.99713 * 13.96967 * 6 4 2 9 9 H 1.48492 * 109.47177 * 84.55471 * 8 6 4 10 10 H 1.48503 * 109.46998 * 204.55727 * 8 6 4 11 11 H 1.48504 * 109.46903 * 324.55190 * 8 6 4 12 12 C 1.53005 * 109.46943 * 119.99207 * 2 1 3 13 13 N 1.46891 * 109.47584 * 300.00282 * 12 2 1 14 14 C 1.46897 * 111.00278 * 179.97438 * 13 12 2 15 15 H 1.08997 * 109.26735 * 325.00887 * 14 13 12 16 16 C 1.52877 * 109.26425 * 84.50548 * 14 13 12 17 17 C 1.50787 * 109.73978 * 174.09139 * 16 14 13 18 18 C 1.52872 * 109.69016 * 287.16390 * 17 16 14 19 19 C 1.52713 * 110.15171 * 53.42758 * 18 17 16 20 20 H 1.09004 * 115.39258 * 128.78730 * 19 18 17 21 21 C 1.53645 * 115.14734 * 270.18856 * 19 18 17 22 22 C 1.52070 * 120.52543 * 338.52898 * 19 18 17 23 23 H 1.08990 * 115.93401 * 151.10960 * 22 19 18 24 24 H 1.08996 * 109.47568 * 309.32119 * 1 2 3 25 25 H 1.09006 * 109.46707 * 69.31989 * 1 2 3 26 26 H 1.09001 * 109.47042 * 189.31907 * 1 2 3 27 27 H 1.08995 * 109.47124 * 179.97438 * 3 2 1 28 28 H 1.09005 * 109.46258 * 300.00115 * 3 2 1 29 29 H 1.08997 * 109.47240 * 59.99284 * 3 2 1 30 30 H 0.97006 * 119.99741 * 180.02562 * 7 6 4 31 31 H 1.09005 * 109.46836 * 60.00641 * 12 2 1 32 32 H 1.09004 * 109.47132 * 179.97438 * 12 2 1 33 33 H 1.00901 * 111.00097 * 303.95117 * 13 12 2 34 34 H 1.08998 * 109.61624 * 294.88766 * 16 14 13 35 35 H 1.08999 * 109.61876 * 55.42567 * 16 14 13 36 36 H 1.09003 * 109.95517 * 166.54306 * 17 16 14 37 37 H 1.09005 * 108.32023 * 46.77815 * 17 16 14 38 38 H 1.09001 * 109.35939 * 293.21790 * 18 17 16 39 39 H 1.09005 * 109.24338 * 173.56294 * 18 17 16 40 40 H 1.08995 * 117.54471 * 4.69688 * 21 19 18 41 41 H 1.09009 * 117.54039 * 219.44539 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6350 -1.6012 -1.1313 6 6 1.7227 -0.2234 -2.4825 7 7 1.9163 -0.9725 -3.5459 8 14 1.0279 1.5007 -2.6684 9 1 2.1420 2.4817 -2.7082 10 1 0.2474 1.5866 -3.9288 11 1 0.1419 1.8043 -1.5159 12 6 2.0399 -0.7211 1.2494 13 7 1.5503 -0.0286 2.4487 14 6 2.0208 -0.6949 3.6704 15 1 2.0587 -1.7710 3.5013 16 6 3.4218 -0.1886 4.0135 17 6 3.8570 -0.7548 5.3415 18 6 3.0867 -0.0702 6.4706 19 6 1.5842 -0.1604 6.2126 20 1 0.9897 -0.5441 7.0418 21 6 0.9902 1.0015 5.4015 22 6 1.0549 -0.3993 4.8072 23 1 0.1003 -0.9210 4.7396 24 1 -0.3634 0.6512 0.7950 25 1 -0.3633 0.3629 -0.9615 26 1 -0.3633 -1.0141 0.1664 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8901 29 1 1.6766 1.9564 0.8899 30 1 1.6987 -0.6295 -4.4268 31 1 1.6766 -1.7488 1.2494 32 1 3.1300 -0.7215 1.2492 33 1 1.8197 0.9437 2.4402 34 1 4.1212 -0.4908 3.2340 35 1 3.4084 0.8982 4.0953 36 1 4.9266 -0.5977 5.4804 37 1 3.6404 -1.8231 5.3460 38 1 3.3816 0.9777 6.5256 39 1 3.3212 -0.5616 7.4150 40 1 1.6812 1.7478 5.0096 41 1 0.0117 1.3770 5.7013 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000556782422.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:09 Heat of formation + Delta-G solvation = 23.222733 kcal Electronic energy + Delta-G solvation = -17778.630656 eV Core-core repulsion = 15272.986895 eV Total energy + Delta-G solvation = -2505.643761 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.82157 -36.94359 -33.92691 -32.85866 -31.51338 -28.55990 -26.20123 -25.23967 -24.74080 -23.32017 -22.41584 -20.70902 -19.02367 -18.18174 -16.44882 -15.96978 -15.47537 -14.80616 -14.24694 -14.17085 -13.59510 -13.42380 -13.18810 -12.86626 -12.59344 -12.38819 -12.01278 -11.92783 -11.73862 -11.47369 -11.07535 -11.00460 -10.69788 -10.39180 -10.28976 -10.12886 -9.98205 -9.79604 -9.74156 -9.61286 -8.92617 -8.52657 -8.34468 -7.74947 -6.05583 -4.00926 3.33390 3.42776 3.46712 3.76988 4.46320 4.56449 4.64745 4.78837 4.97843 5.12626 5.20447 5.24838 5.27865 5.44403 5.55191 5.62058 5.73327 5.85836 5.91191 5.98350 6.05606 6.11122 6.15147 6.20788 6.28115 6.30530 6.35168 6.39790 6.55177 6.62847 6.80698 6.84583 6.97483 7.11040 7.44154 7.57538 7.67306 7.89677 7.99601 8.58173 8.99314 9.60888 11.07933 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.045134 B = 0.005864 C = 0.005643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.220742 B = 4774.096131 C = 4960.956130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.040 3.960 3 C -0.149 4.149 4 C -0.511 4.511 5 H 0.071 0.929 6 C 0.073 3.927 7 N -0.897 5.897 8 Si 0.884 3.116 9 H -0.289 1.289 10 H -0.307 1.307 11 H -0.246 1.246 12 C 0.085 3.915 13 N -0.682 5.682 14 C 0.118 3.882 15 H 0.078 0.922 16 C -0.152 4.152 17 C -0.115 4.115 18 C -0.086 4.086 19 C -0.155 4.155 20 H 0.098 0.902 21 C -0.178 4.178 22 C -0.114 4.114 23 H 0.099 0.901 24 H 0.032 0.968 25 H 0.043 0.957 26 H 0.040 0.960 27 H 0.045 0.955 28 H 0.039 0.961 29 H 0.033 0.967 30 H 0.262 0.738 31 H 0.063 0.937 32 H 0.020 0.980 33 H 0.336 0.664 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.090 0.910 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.748 3.120 18.242 18.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.039 3.961 3 C -0.206 4.206 4 C -0.549 4.549 5 H 0.089 0.911 6 C -0.129 4.129 7 N -0.535 5.535 8 Si 0.717 3.283 9 H -0.217 1.217 10 H -0.236 1.236 11 H -0.171 1.171 12 C -0.043 4.043 13 N -0.313 5.313 14 C 0.008 3.992 15 H 0.097 0.903 16 C -0.191 4.191 17 C -0.153 4.153 18 C -0.124 4.124 19 C -0.174 4.174 20 H 0.117 0.883 21 C -0.215 4.215 22 C -0.132 4.132 23 H 0.117 0.883 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.039 0.961 33 H 0.155 0.845 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.109 0.891 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.116 2.767 18.017 18.229 hybrid contribution 0.640 1.239 -0.324 1.431 sum 0.756 4.006 17.694 18.157 Atomic orbital electron populations 1.22066 0.97474 0.99698 0.99160 1.18477 0.92887 0.91447 0.93264 1.22362 1.00266 0.99203 0.98724 1.20873 1.33501 1.11997 0.88558 0.91128 1.24974 0.94717 0.97315 0.95846 1.69967 1.48907 1.35972 0.98650 0.87312 0.79369 0.85613 0.75987 1.21679 1.23613 1.17142 1.21978 0.96036 0.97743 0.88566 1.60603 1.63503 1.06187 1.00961 1.20790 0.90090 0.98914 0.89405 0.90350 1.21901 0.98680 1.00941 0.97575 1.21061 0.99094 1.00485 0.94662 1.21026 0.92614 1.00504 0.98246 1.22258 0.96057 1.04146 0.94933 0.88336 1.23002 1.02101 0.91826 1.04586 1.21738 1.00350 0.99104 0.92056 0.88308 0.94897 0.93863 0.94134 0.93628 0.94269 0.94780 0.92785 0.91832 0.96146 0.84502 0.91522 0.92204 0.92190 0.91916 0.91981 0.91945 0.89135 0.89410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 7.55 37.16 0.28 -2.56 16 2 C 0.04 0.92 0.57 -155.66 -0.09 0.83 16 3 C -0.15 -3.19 7.37 37.16 0.27 -2.92 16 4 C -0.51 -14.18 8.62 -34.44 -0.30 -14.47 16 5 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 6 C 0.07 2.11 5.32 -17.82 -0.09 2.01 16 7 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 8 Si 0.88 22.14 22.79 -169.99 -3.87 18.26 16 9 H -0.29 -7.18 7.10 56.52 0.40 -6.77 16 10 H -0.31 -7.83 7.11 56.52 0.40 -7.43 16 11 H -0.25 -5.74 4.65 56.52 0.26 -5.47 16 12 C 0.09 1.67 4.36 -3.83 -0.02 1.66 16 13 N -0.68 -11.22 5.62 -107.30 -0.60 -11.83 16 14 C 0.12 1.64 2.55 -68.25 -0.17 1.47 16 15 H 0.08 1.15 7.79 -51.93 -0.40 0.74 16 16 C -0.15 -1.89 4.83 -27.90 -0.13 -2.03 16 17 C -0.11 -1.21 5.82 -27.91 -0.16 -1.37 16 18 C -0.09 -0.84 5.83 -26.94 -0.16 -0.99 16 19 C -0.16 -1.63 6.24 -90.91 -0.57 -2.20 16 20 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 21 C -0.18 -2.02 9.61 -26.75 -0.26 -2.27 16 22 C -0.11 -1.41 5.60 -91.92 -0.51 -1.93 16 23 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 24 H 0.03 0.67 7.88 -51.93 -0.41 0.26 16 25 H 0.04 1.02 4.30 -51.93 -0.22 0.80 16 26 H 0.04 0.90 8.12 -51.93 -0.42 0.47 16 27 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.04 0.89 2.25 -51.93 -0.12 0.78 16 29 H 0.03 0.63 6.57 -51.93 -0.34 0.29 16 30 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.06 1.30 8.05 -51.93 -0.42 0.89 16 32 H 0.02 0.40 7.49 -51.93 -0.39 0.02 16 33 H 0.34 5.43 6.46 -39.29 -0.25 5.17 16 34 H 0.07 0.90 7.55 -51.93 -0.39 0.51 16 35 H 0.06 0.74 6.99 -51.93 -0.36 0.38 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.67 8.03 -51.93 -0.42 0.25 16 38 H 0.06 0.59 8.04 -51.93 -0.42 0.17 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.09 1.05 7.26 -51.93 -0.38 0.67 16 41 H 0.09 0.94 8.14 -51.92 -0.42 0.51 16 LS Contribution 297.39 15.07 4.48 4.48 Total: -1.00 -28.98 297.39 -8.30 -37.28 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -7.17 Total: 3.38 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: -1.91 Total: -24.76 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.17 Total: -38.65 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -3.87 Total: 18.26 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.98 -8.30 -37.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556782422.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.505 kcal (2) G-P(sol) polarization free energy of solvation -28.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds