Wall clock time and date at job start Sun Mar 29 2020 22:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47370 * 2 1 4 4 C 1.50699 * 109.47624 * 239.99815 * 2 1 3 5 5 H 1.08006 * 119.99850 * 241.36659 * 4 2 1 6 6 C 1.37871 * 120.00205 * 61.35697 * 4 2 1 7 7 N 1.31510 * 120.00379 * 193.96934 * 6 4 2 8 8 Si 1.86810 * 119.99713 * 13.96967 * 6 4 2 9 9 H 1.48492 * 109.47177 * 84.55471 * 8 6 4 10 10 H 1.48503 * 109.46998 * 204.55727 * 8 6 4 11 11 H 1.48504 * 109.46903 * 324.55190 * 8 6 4 12 12 C 1.53005 * 109.46943 * 119.99207 * 2 1 3 13 13 N 1.46891 * 109.47584 * 300.00282 * 12 2 1 14 14 C 1.46897 * 111.00278 * 179.97438 * 13 12 2 15 15 H 1.08997 * 109.26735 * 325.00887 * 14 13 12 16 16 C 1.52877 * 109.26425 * 84.50548 * 14 13 12 17 17 C 1.50787 * 109.73978 * 174.09139 * 16 14 13 18 18 C 1.52872 * 109.69016 * 287.16390 * 17 16 14 19 19 C 1.52713 * 110.15171 * 53.42758 * 18 17 16 20 20 H 1.09004 * 115.39258 * 128.78730 * 19 18 17 21 21 C 1.53645 * 115.14734 * 270.18856 * 19 18 17 22 22 C 1.52070 * 120.52543 * 338.52898 * 19 18 17 23 23 H 1.08990 * 115.93401 * 151.10960 * 22 19 18 24 24 H 1.08996 * 109.47568 * 309.32119 * 1 2 3 25 25 H 1.09006 * 109.46707 * 69.31989 * 1 2 3 26 26 H 1.09001 * 109.47042 * 189.31907 * 1 2 3 27 27 H 1.08995 * 109.47124 * 179.97438 * 3 2 1 28 28 H 1.09005 * 109.46258 * 300.00115 * 3 2 1 29 29 H 1.08997 * 109.47240 * 59.99284 * 3 2 1 30 30 H 0.97006 * 119.99741 * 180.02562 * 7 6 4 31 31 H 1.09005 * 109.46836 * 60.00641 * 12 2 1 32 32 H 1.09004 * 109.47132 * 179.97438 * 12 2 1 33 33 H 1.00901 * 111.00097 * 303.95117 * 13 12 2 34 34 H 1.08998 * 109.61624 * 294.88766 * 16 14 13 35 35 H 1.08999 * 109.61876 * 55.42567 * 16 14 13 36 36 H 1.09003 * 109.95517 * 166.54306 * 17 16 14 37 37 H 1.09005 * 108.32023 * 46.77815 * 17 16 14 38 38 H 1.09001 * 109.35939 * 293.21790 * 18 17 16 39 39 H 1.09005 * 109.24338 * 173.56294 * 18 17 16 40 40 H 1.08995 * 117.54471 * 4.69688 * 21 19 18 41 41 H 1.09009 * 117.54039 * 219.44539 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6350 -1.6012 -1.1313 6 6 1.7227 -0.2234 -2.4825 7 7 1.9163 -0.9725 -3.5459 8 14 1.0279 1.5007 -2.6684 9 1 2.1420 2.4817 -2.7082 10 1 0.2474 1.5866 -3.9288 11 1 0.1419 1.8043 -1.5159 12 6 2.0399 -0.7211 1.2494 13 7 1.5503 -0.0286 2.4487 14 6 2.0208 -0.6949 3.6704 15 1 2.0587 -1.7710 3.5013 16 6 3.4218 -0.1886 4.0135 17 6 3.8570 -0.7548 5.3415 18 6 3.0867 -0.0702 6.4706 19 6 1.5842 -0.1604 6.2126 20 1 0.9897 -0.5441 7.0418 21 6 0.9902 1.0015 5.4015 22 6 1.0549 -0.3993 4.8072 23 1 0.1003 -0.9210 4.7396 24 1 -0.3634 0.6512 0.7950 25 1 -0.3633 0.3629 -0.9615 26 1 -0.3633 -1.0141 0.1664 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8901 29 1 1.6766 1.9564 0.8899 30 1 1.6987 -0.6295 -4.4268 31 1 1.6766 -1.7488 1.2494 32 1 3.1300 -0.7215 1.2492 33 1 1.8197 0.9437 2.4402 34 1 4.1212 -0.4908 3.2340 35 1 3.4084 0.8982 4.0953 36 1 4.9266 -0.5977 5.4804 37 1 3.6404 -1.8231 5.3460 38 1 3.3816 0.9777 6.5256 39 1 3.3212 -0.5616 7.4150 40 1 1.6812 1.7478 5.0096 41 1 0.0117 1.3770 5.7013 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000556782422.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:08 Heat of formation + Delta-G solvation = 5.416698 kcal Electronic energy + Delta-G solvation = -17779.402784 eV Core-core repulsion = 15272.986895 eV Total energy + Delta-G solvation = -2506.415888 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.81728 -38.59326 -35.37951 -33.93914 -33.40845 -29.74195 -27.96114 -27.09270 -26.24391 -24.63713 -23.32048 -21.65080 -20.70260 -19.35467 -18.07318 -17.53008 -17.07213 -16.11948 -15.60051 -15.40181 -14.86692 -14.72214 -14.63924 -14.32159 -14.05617 -13.98314 -13.70000 -13.44094 -13.01559 -12.69237 -12.31923 -12.27882 -12.06033 -11.91086 -11.77322 -11.74600 -11.55244 -11.29881 -10.95539 -10.71623 -10.57128 -10.54415 -10.28646 -9.10838 -8.28987 -6.27972 1.35082 1.38889 1.49615 2.36059 2.83405 3.08173 3.46249 3.74509 3.84673 4.08634 4.19808 4.21366 4.27269 4.31294 4.42432 4.51406 4.57489 4.66712 4.70060 4.82975 4.85313 4.89039 4.99392 5.03644 5.09932 5.11789 5.13500 5.16610 5.29440 5.30260 5.35667 5.39208 5.42474 5.49651 5.61739 5.77109 5.87998 6.25868 6.36275 6.63902 6.79600 7.37362 8.88358 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.045134 B = 0.005864 C = 0.005643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.220742 B = 4774.096131 C = 4960.956130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.035 3.965 3 C -0.146 4.146 4 C -0.513 4.513 5 H 0.027 0.973 6 C 0.016 3.984 7 N -0.949 5.949 8 Si 0.943 3.057 9 H -0.283 1.283 10 H -0.316 1.316 11 H -0.213 1.213 12 C 0.100 3.900 13 N -0.678 5.678 14 C 0.119 3.881 15 H 0.064 0.936 16 C -0.147 4.147 17 C -0.113 4.113 18 C -0.085 4.085 19 C -0.141 4.141 20 H 0.113 0.887 21 C -0.175 4.175 22 C -0.131 4.131 23 H 0.091 0.909 24 H 0.058 0.942 25 H 0.030 0.970 26 H 0.032 0.968 27 H 0.044 0.956 28 H 0.029 0.971 29 H 0.069 0.931 30 H 0.263 0.737 31 H 0.046 0.954 32 H 0.012 0.988 33 H 0.341 0.659 34 H 0.050 0.950 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.213 5.201 20.985 21.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.034 3.966 3 C -0.203 4.203 4 C -0.551 4.551 5 H 0.046 0.954 6 C -0.181 4.181 7 N -0.589 5.589 8 Si 0.773 3.227 9 H -0.210 1.210 10 H -0.245 1.245 11 H -0.137 1.137 12 C -0.029 4.029 13 N -0.309 5.309 14 C 0.009 3.991 15 H 0.082 0.918 16 C -0.186 4.186 17 C -0.151 4.151 18 C -0.123 4.123 19 C -0.159 4.159 20 H 0.131 0.869 21 C -0.212 4.212 22 C -0.150 4.150 23 H 0.109 0.891 24 H 0.077 0.923 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.048 0.952 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.031 0.969 33 H 0.161 0.839 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.416 4.853 20.806 21.368 hybrid contribution 0.858 0.462 -1.132 1.494 sum 0.441 5.315 19.673 20.383 Atomic orbital electron populations 1.21979 0.96692 0.99883 0.99303 1.18473 0.93388 0.92484 0.92247 1.22278 1.00396 0.97751 0.99867 1.21216 1.32219 1.10801 0.90879 0.95421 1.25813 0.95516 1.01325 0.95435 1.70117 1.51313 1.38162 0.99297 0.86358 0.79324 0.80502 0.76538 1.20997 1.24525 1.13692 1.21617 0.95355 0.96837 0.89078 1.60540 1.63474 1.06282 1.00592 1.20793 0.91534 0.97936 0.88818 0.91773 1.21818 0.97240 1.01226 0.98331 1.21053 0.99998 1.00230 0.93815 1.21060 0.91705 1.00995 0.98502 1.22365 0.96833 1.02816 0.93933 0.86932 1.23054 1.02654 0.91226 1.04269 1.21610 0.99945 1.00586 0.92821 0.89050 0.92290 0.95085 0.94885 0.93653 0.95234 0.91235 0.92857 0.93514 0.96935 0.83945 0.93108 0.91693 0.91045 0.92296 0.91337 0.90190 0.89173 0.88637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.21 7.55 71.98 0.54 -4.67 16 2 C 0.04 1.58 0.57 -52.93 -0.03 1.55 16 3 C -0.15 -5.88 7.37 71.98 0.53 -5.35 16 4 C -0.51 -29.15 8.62 25.60 0.22 -28.93 16 5 H 0.03 1.75 7.99 -2.91 -0.02 1.73 16 6 C 0.02 0.93 5.32 84.65 0.45 1.38 16 7 N -0.95 -60.34 13.96 21.44 0.30 -60.04 16 8 Si 0.94 45.35 22.79 68.60 1.56 46.91 16 9 H -0.28 -13.22 7.10 99.48 0.71 -12.51 16 10 H -0.32 -15.53 7.11 99.48 0.71 -14.82 16 11 H -0.21 -9.10 4.65 99.48 0.46 -8.63 16 12 C 0.10 3.93 4.36 86.31 0.38 4.31 16 13 N -0.68 -21.16 5.62 -493.38 -2.77 -23.93 16 14 C 0.12 3.15 2.55 44.57 0.11 3.26 16 15 H 0.06 1.87 7.79 -2.39 -0.02 1.85 16 16 C -0.15 -3.42 4.83 29.83 0.14 -3.28 16 17 C -0.11 -2.11 5.82 29.83 0.17 -1.93 16 18 C -0.09 -1.36 5.83 30.46 0.18 -1.18 16 19 C -0.14 -2.50 6.24 -10.98 -0.07 -2.57 16 20 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 21 C -0.17 -3.41 9.61 30.58 0.29 -3.11 16 22 C -0.13 -2.97 5.60 -11.64 -0.07 -3.03 16 23 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 24 H 0.06 2.22 7.88 -2.39 -0.02 2.20 16 25 H 0.03 1.39 4.30 -2.38 -0.01 1.38 16 26 H 0.03 1.43 8.12 -2.39 -0.02 1.41 16 27 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.03 1.25 2.25 -2.38 -0.01 1.24 16 29 H 0.07 2.30 6.57 -2.39 -0.02 2.28 16 30 H 0.26 15.77 8.31 -92.70 -0.77 15.00 16 31 H 0.05 1.96 8.05 -2.38 -0.02 1.95 16 32 H 0.01 0.50 7.49 -2.39 -0.02 0.48 16 33 H 0.34 10.03 6.46 -89.69 -0.58 9.45 16 34 H 0.05 1.33 7.55 -2.39 -0.02 1.31 16 35 H 0.06 1.45 6.99 -2.39 -0.02 1.43 16 36 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.06 1.15 8.03 -2.38 -0.02 1.13 16 38 H 0.07 1.04 8.04 -2.39 -0.02 1.02 16 39 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.09 1.78 7.26 -2.39 -0.02 1.76 16 41 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 Total: -1.00 -63.51 297.39 2.12 -61.39 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.17 Total: 19.23 kcal Atomic # 6 Polarization: -46.42 SS G_CDS: 2.86 Total: -43.56 kcal Atomic # 7 Polarization: -81.50 SS G_CDS: -2.47 Total: -83.98 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.56 Total: 46.91 kcal Total: -63.51 2.12 -61.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556782422.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.807 kcal (2) G-P(sol) polarization free energy of solvation -63.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds