Wall clock time and date at job start Sun Mar 29 2020 21:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47001 * 2 1 4 4 C 1.52998 * 109.47118 * 240.00557 * 2 1 3 5 5 C 1.50702 * 109.47523 * 174.99818 * 4 2 1 6 6 H 1.08002 * 119.99197 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00119 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00428 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99804 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.46981 * 359.97438 * 9 7 5 11 11 H 1.48490 * 109.47395 * 119.99600 * 9 7 5 12 12 H 1.48507 * 109.46725 * 239.99627 * 9 7 5 13 13 N 1.46894 * 109.47548 * 120.00662 * 2 1 3 14 14 C 1.46896 * 111.00129 * 58.95217 * 13 2 1 15 15 C 1.46902 * 110.99907 * 295.00105 * 13 2 1 16 16 C 1.50700 * 109.47289 * 189.99720 * 15 13 2 17 17 C 1.39875 * 126.03694 * 90.02415 * 16 15 13 18 18 N 1.30839 * 108.20184 * 179.97438 * 17 16 15 19 19 N 1.40085 * 108.20364 * 0.02562 * 18 17 16 20 20 C 1.46506 * 126.03688 * 180.02562 * 19 18 17 21 21 C 1.34949 * 107.93019 * 359.97438 * 19 18 17 22 22 H 1.08998 * 109.47391 * 299.99158 * 1 2 3 23 23 H 1.09003 * 109.47685 * 59.99530 * 1 2 3 24 24 H 1.09008 * 109.47068 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47254 * 295.00302 * 4 2 1 26 26 H 1.09006 * 109.47262 * 54.99601 * 4 2 1 27 27 H 0.96997 * 120.00171 * 180.02562 * 8 7 5 28 28 H 1.09008 * 109.47362 * 296.04541 * 14 13 2 29 29 H 1.09002 * 109.47546 * 56.04734 * 14 13 2 30 30 H 1.09003 * 109.47712 * 176.05108 * 14 13 2 31 31 H 1.09003 * 109.47091 * 69.99690 * 15 13 2 32 32 H 1.09002 * 109.47227 * 310.00058 * 15 13 2 33 33 H 1.08003 * 125.89835 * 359.71921 * 17 16 15 34 34 H 1.09006 * 109.46733 * 269.99752 * 20 19 18 35 35 H 1.08996 * 109.47043 * 29.99734 * 20 19 18 36 36 H 1.09000 * 109.46815 * 150.00063 * 20 19 18 37 37 H 1.07998 * 126.13002 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 3.5419 -0.6148 -1.3129 6 1 4.0788 -0.0854 -0.5397 7 6 4.2302 -1.1924 -2.3585 8 7 3.5762 -1.8366 -3.3003 9 14 6.0920 -1.0611 -2.4369 10 1 6.5837 -0.2917 -1.2657 11 1 6.6854 -2.4222 -2.4200 12 1 6.4869 -0.3645 -3.6876 13 7 2.0197 -0.6926 1.1993 14 6 1.5284 -2.0762 1.2457 15 6 1.6488 0.0389 2.4180 16 6 2.3680 -0.5575 3.6004 17 6 3.6231 -0.1701 4.0811 18 7 3.9117 -0.9153 5.1172 19 7 2.8480 -1.8020 5.3284 20 6 2.7643 -2.8109 6.3874 21 6 1.9136 -1.5622 4.3848 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.7516 -1.7714 -1.2058 26 1 1.6053 -0.2616 -2.1370 27 1 4.0606 -2.2433 -4.0358 28 1 0.4420 -2.0732 1.3346 29 1 1.8167 -2.5951 0.3315 30 1 1.9618 -2.5871 2.1056 31 1 0.5723 -0.0348 2.5725 32 1 1.9297 1.0868 2.3125 33 1 4.2480 0.6068 3.6661 34 1 3.1931 -3.7477 6.0314 35 1 3.3174 -2.4670 7.2613 36 1 1.7200 -2.9686 6.6571 37 1 0.9721 -2.0798 4.2749 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570805877.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:23 Heat of formation + Delta-G solvation = 83.952322 kcal Electronic energy + Delta-G solvation = -17050.529373 eV Core-core repulsion = 14443.978701 eV Total energy + Delta-G solvation = -2606.550672 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.00281 -37.69466 -33.52042 -32.70897 -31.31377 -29.35259 -27.73400 -27.21724 -25.74760 -23.76756 -22.40618 -20.86159 -19.89695 -18.62969 -16.62270 -16.11457 -15.66985 -15.03056 -14.54159 -14.31848 -14.08809 -13.71231 -13.21087 -12.82356 -12.68001 -12.50017 -12.18743 -11.97106 -11.62182 -11.47123 -11.25485 -10.87527 -10.60843 -10.57716 -10.33434 -10.32281 -9.87730 -9.21883 -9.12138 -8.91352 -8.23635 -8.16998 -7.32517 -5.83915 -3.81030 2.04500 2.65722 3.03753 3.42339 3.49752 3.56331 4.56303 4.61610 4.88962 4.96040 5.05591 5.25996 5.31020 5.44711 5.53944 5.69281 5.82655 5.92359 6.01264 6.03752 6.09317 6.18197 6.23467 6.39669 6.56731 6.71290 6.82569 6.87068 7.04822 7.15168 7.61599 7.77300 7.88460 8.01134 8.11545 8.19326 8.64407 9.25782 9.80753 11.28183 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.023593 B = 0.006673 C = 0.005721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.489342 B = 4195.307559 C = 4892.670717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.086 3.914 3 H 0.070 0.930 4 C 0.027 3.973 5 C -0.486 4.486 6 H 0.062 0.938 7 C 0.049 3.951 8 N -0.906 5.906 9 Si 0.888 3.112 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.288 1.288 13 N -0.510 5.510 14 C 0.028 3.972 15 C 0.127 3.873 16 C -0.211 4.211 17 C 0.069 3.931 18 N -0.307 5.307 19 N -0.384 5.384 20 C 0.105 3.895 21 C 0.051 3.949 22 H 0.040 0.960 23 H 0.054 0.946 24 H 0.051 0.949 25 H 0.020 0.980 26 H 0.018 0.982 27 H 0.256 0.744 28 H 0.011 0.989 29 H 0.080 0.920 30 H 0.051 0.949 31 H 0.029 0.971 32 H 0.075 0.925 33 H 0.183 0.817 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.227 0.055 16.087 17.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.022 4.022 3 H 0.088 0.912 4 C -0.010 4.010 5 C -0.525 4.525 6 H 0.080 0.920 7 C -0.150 4.150 8 N -0.547 5.547 9 Si 0.716 3.284 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.214 1.214 13 N -0.232 5.232 14 C -0.121 4.121 15 C -0.001 4.001 16 C -0.223 4.223 17 C -0.117 4.117 18 N -0.128 5.128 19 N -0.167 5.167 20 C -0.036 4.036 21 C -0.095 4.095 22 H 0.059 0.941 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.038 0.962 26 H 0.036 0.964 27 H 0.065 0.935 28 H 0.030 0.970 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.094 0.906 33 H 0.199 0.801 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -4.826 -0.425 16.939 17.618 hybrid contribution -0.468 -0.001 -0.759 0.892 sum -5.295 -0.426 16.179 17.029 Atomic orbital electron populations 1.22530 0.99969 1.01222 1.00620 1.21932 0.89903 0.98478 0.91893 0.91203 1.19246 0.96395 0.95419 0.89900 1.21238 0.91829 1.32651 1.06795 0.91989 1.25003 0.97952 0.95967 0.96039 1.69976 1.35061 1.37223 1.12425 0.86594 0.86577 0.77535 0.77645 1.19703 1.21432 1.21447 1.62096 1.59089 1.01617 1.00435 1.22367 0.95766 0.91121 1.02802 1.20350 0.95066 0.97383 0.87347 1.20062 0.97929 1.02632 1.01674 1.23791 0.95741 0.98906 0.93298 1.77313 1.09327 1.05506 1.20685 1.48369 1.14321 1.29176 1.24800 1.21756 1.03169 0.89552 0.89156 1.22251 0.96023 0.99325 0.91889 0.94115 0.92647 0.92983 0.96184 0.96410 0.93464 0.97023 0.90102 0.92998 0.95274 0.90648 0.80057 0.91031 0.89661 0.89897 0.81625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.13 8.50 37.16 0.32 -2.82 16 2 C 0.09 1.74 2.29 -67.72 -0.16 1.59 16 3 H 0.07 1.44 8.03 -51.93 -0.42 1.02 16 4 C 0.03 0.70 4.27 -27.88 -0.12 0.58 16 5 C -0.49 -13.76 8.84 -34.44 -0.30 -14.06 16 6 H 0.06 1.76 7.74 -52.49 -0.41 1.36 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 8 N -0.91 -27.56 13.29 55.43 0.74 -26.82 16 9 Si 0.89 22.46 29.54 -169.99 -5.02 17.44 16 10 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 N -0.51 -9.73 4.46 -236.33 -1.05 -10.79 16 14 C 0.03 0.50 8.47 60.06 0.51 1.01 16 15 C 0.13 1.99 4.89 -4.98 -0.02 1.97 16 16 C -0.21 -3.21 4.99 -105.05 -0.52 -3.73 16 17 C 0.07 1.09 11.96 -17.36 -0.21 0.88 16 18 N -0.31 -4.91 12.58 30.63 0.39 -4.52 16 19 N -0.38 -5.11 4.01 -68.16 -0.27 -5.39 16 20 C 0.11 0.88 11.47 59.85 0.69 1.57 16 21 C 0.05 0.68 10.02 -17.22 -0.17 0.51 16 22 H 0.04 0.60 6.75 -51.93 -0.35 0.25 16 23 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.05 0.88 6.48 -51.92 -0.34 0.55 16 25 H 0.02 0.54 6.09 -51.93 -0.32 0.22 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.01 0.19 6.51 -51.92 -0.34 -0.15 16 29 H 0.08 1.71 6.03 -51.93 -0.31 1.40 16 30 H 0.05 0.88 6.32 -51.93 -0.33 0.56 16 31 H 0.03 0.42 6.94 -51.93 -0.36 0.06 16 32 H 0.08 1.14 8.00 -51.93 -0.42 0.73 16 33 H 0.18 2.56 8.06 -52.48 -0.42 2.14 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.17 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 300.37 15.07 4.53 4.53 Total: -1.00 -32.90 300.37 -6.47 -39.37 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -5.68 Total: -2.64 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -0.09 Total: -11.18 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: -0.21 Total: -47.52 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.90 -6.47 -39.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570805877.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.324 kcal (2) G-P(sol) polarization free energy of solvation -32.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds