Wall clock time and date at job start Sun Mar 29 2020 21:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47001 * 2 1 4 4 C 1.52998 * 109.47118 * 240.00557 * 2 1 3 5 5 C 1.50702 * 109.47523 * 174.99818 * 4 2 1 6 6 H 1.08002 * 119.99197 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00119 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00428 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99804 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.46981 * 359.97438 * 9 7 5 11 11 H 1.48490 * 109.47395 * 119.99600 * 9 7 5 12 12 H 1.48507 * 109.46725 * 239.99627 * 9 7 5 13 13 N 1.46894 * 109.47548 * 120.00662 * 2 1 3 14 14 C 1.46896 * 111.00129 * 58.95217 * 13 2 1 15 15 C 1.46902 * 110.99907 * 295.00105 * 13 2 1 16 16 C 1.50700 * 109.47289 * 189.99720 * 15 13 2 17 17 C 1.39875 * 126.03694 * 90.02415 * 16 15 13 18 18 N 1.30839 * 108.20184 * 179.97438 * 17 16 15 19 19 N 1.40085 * 108.20364 * 0.02562 * 18 17 16 20 20 C 1.46506 * 126.03688 * 180.02562 * 19 18 17 21 21 C 1.34949 * 107.93019 * 359.97438 * 19 18 17 22 22 H 1.08998 * 109.47391 * 299.99158 * 1 2 3 23 23 H 1.09003 * 109.47685 * 59.99530 * 1 2 3 24 24 H 1.09008 * 109.47068 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47254 * 295.00302 * 4 2 1 26 26 H 1.09006 * 109.47262 * 54.99601 * 4 2 1 27 27 H 0.96997 * 120.00171 * 180.02562 * 8 7 5 28 28 H 1.09008 * 109.47362 * 296.04541 * 14 13 2 29 29 H 1.09002 * 109.47546 * 56.04734 * 14 13 2 30 30 H 1.09003 * 109.47712 * 176.05108 * 14 13 2 31 31 H 1.09003 * 109.47091 * 69.99690 * 15 13 2 32 32 H 1.09002 * 109.47227 * 310.00058 * 15 13 2 33 33 H 1.08003 * 125.89835 * 359.71921 * 17 16 15 34 34 H 1.09006 * 109.46733 * 269.99752 * 20 19 18 35 35 H 1.08996 * 109.47043 * 29.99734 * 20 19 18 36 36 H 1.09000 * 109.46815 * 150.00063 * 20 19 18 37 37 H 1.07998 * 126.13002 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 3.5419 -0.6148 -1.3129 6 1 4.0788 -0.0854 -0.5397 7 6 4.2302 -1.1924 -2.3585 8 7 3.5762 -1.8366 -3.3003 9 14 6.0920 -1.0611 -2.4369 10 1 6.5837 -0.2917 -1.2657 11 1 6.6854 -2.4222 -2.4200 12 1 6.4869 -0.3645 -3.6876 13 7 2.0197 -0.6926 1.1993 14 6 1.5284 -2.0762 1.2457 15 6 1.6488 0.0389 2.4180 16 6 2.3680 -0.5575 3.6004 17 6 3.6231 -0.1701 4.0811 18 7 3.9117 -0.9153 5.1172 19 7 2.8480 -1.8020 5.3284 20 6 2.7643 -2.8109 6.3874 21 6 1.9136 -1.5622 4.3848 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.7516 -1.7714 -1.2058 26 1 1.6053 -0.2616 -2.1370 27 1 4.0606 -2.2433 -4.0358 28 1 0.4420 -2.0732 1.3346 29 1 1.8167 -2.5951 0.3315 30 1 1.9618 -2.5871 2.1056 31 1 0.5723 -0.0348 2.5725 32 1 1.9297 1.0868 2.3125 33 1 4.2480 0.6068 3.6661 34 1 3.1931 -3.7477 6.0314 35 1 3.3174 -2.4670 7.2613 36 1 1.7200 -2.9686 6.6571 37 1 0.9721 -2.0798 4.2749 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570805877.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:22 Heat of formation + Delta-G solvation = 61.765034 kcal Electronic energy + Delta-G solvation = -17051.491486 eV Core-core repulsion = 14443.978701 eV Total energy + Delta-G solvation = -2607.512785 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.06341 -39.18954 -35.12348 -34.16518 -32.80543 -30.68658 -29.25489 -28.62959 -26.90920 -25.42806 -24.11294 -21.88645 -21.04354 -20.21350 -18.32693 -17.62005 -17.02125 -16.49861 -16.08625 -15.56138 -15.42221 -15.03458 -14.57110 -14.11562 -13.83256 -13.74118 -13.48606 -13.45359 -13.11736 -12.96376 -12.81230 -12.61490 -12.36576 -12.18096 -12.13575 -11.70974 -11.43682 -11.03645 -10.97452 -10.44963 -10.26807 -9.30310 -8.72288 -8.07626 -6.11166 1.01043 1.40809 1.42403 1.55515 1.77774 1.88516 2.49055 3.25079 3.50388 3.76507 4.03914 4.26179 4.33554 4.39208 4.46200 4.47169 4.57266 4.67007 4.70991 4.73805 4.78791 4.95627 5.01117 5.06008 5.20427 5.27275 5.32910 5.38399 5.55995 5.75033 5.78068 5.95115 6.22684 6.39865 6.55862 6.65566 6.80746 7.03608 7.54460 9.04527 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.023593 B = 0.006673 C = 0.005721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.489342 B = 4195.307559 C = 4892.670717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.094 3.906 3 H 0.065 0.935 4 C 0.033 3.967 5 C -0.494 4.494 6 H 0.056 0.944 7 C -0.005 4.005 8 N -0.941 5.941 9 Si 0.951 3.049 10 H -0.267 1.267 11 H -0.286 1.286 12 H -0.281 1.281 13 N -0.534 5.534 14 C 0.038 3.962 15 C 0.136 3.864 16 C -0.236 4.236 17 C 0.051 3.949 18 N -0.339 5.339 19 N -0.382 5.382 20 C 0.094 3.906 21 C 0.064 3.936 22 H 0.070 0.930 23 H 0.054 0.946 24 H 0.051 0.949 25 H 0.000 1.000 26 H -0.009 1.009 27 H 0.257 0.743 28 H 0.035 0.965 29 H 0.041 0.959 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.184 0.816 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.117 0.883 37 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.933 -0.112 17.934 19.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.014 4.014 3 H 0.083 0.917 4 C -0.005 4.005 5 C -0.533 4.533 6 H 0.075 0.925 7 C -0.201 4.201 8 N -0.583 5.583 9 Si 0.778 3.222 10 H -0.191 1.191 11 H -0.212 1.212 12 H -0.207 1.207 13 N -0.257 5.257 14 C -0.110 4.110 15 C 0.008 3.992 16 C -0.248 4.248 17 C -0.134 4.134 18 N -0.161 5.161 19 N -0.165 5.165 20 C -0.045 4.045 21 C -0.084 4.084 22 H 0.089 0.911 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.018 0.982 26 H 0.010 0.990 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.200 0.800 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.135 0.865 37 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -5.525 -0.588 18.814 19.618 hybrid contribution -0.270 0.000 -1.260 1.289 sum -5.795 -0.588 17.554 18.495 Atomic orbital electron populations 1.22385 0.97113 1.01658 1.02087 1.21617 0.92133 0.97262 0.90384 0.91726 1.19117 0.95019 0.94598 0.91717 1.21545 0.93468 1.31915 1.06330 0.92547 1.25804 1.02520 0.95858 0.95881 1.70093 1.36817 1.38305 1.13118 0.85592 0.81175 0.77527 0.77902 1.19126 1.21201 1.20661 1.61969 1.60266 1.02211 1.01281 1.22206 0.97227 0.90464 1.01132 1.20287 0.96249 0.96896 0.85767 1.20101 0.98156 1.04161 1.02393 1.23968 0.96416 0.99367 0.93687 1.77245 1.10987 1.06652 1.21228 1.48777 1.13412 1.28932 1.25362 1.22162 1.05690 0.88563 0.88135 1.22721 0.96695 0.98202 0.90754 0.91125 0.92693 0.93001 0.98222 0.99046 0.93377 0.94645 0.94058 0.91917 0.93197 0.90649 0.79950 0.90245 0.89108 0.86500 0.78346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.57 8.50 71.98 0.61 -4.96 16 2 C 0.09 3.78 2.29 44.91 0.10 3.89 16 3 H 0.06 2.64 8.03 -2.39 -0.02 2.62 16 4 C 0.03 1.70 4.27 29.85 0.13 1.83 16 5 C -0.49 -28.46 8.84 25.60 0.23 -28.23 16 6 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 7 C -0.01 -0.30 5.46 84.65 0.46 0.17 16 8 N -0.94 -58.41 13.29 21.45 0.28 -58.13 16 9 Si 0.95 46.60 29.54 68.60 2.03 48.63 16 10 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 12 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 13 N -0.53 -19.83 4.46 -901.62 -4.02 -23.85 16 14 C 0.04 1.33 8.47 127.69 1.08 2.41 16 15 C 0.14 3.96 4.89 85.56 0.42 4.37 16 16 C -0.24 -6.73 4.99 -20.14 -0.10 -6.83 16 17 C 0.05 1.57 11.96 85.24 1.02 2.59 16 18 N -0.34 -10.48 12.58 -57.02 -0.72 -11.20 16 19 N -0.38 -9.24 4.01 -369.55 -1.48 -10.72 16 20 C 0.09 1.29 11.47 127.77 1.47 2.75 16 21 C 0.06 1.49 10.02 83.54 0.84 2.33 16 22 H 0.07 1.85 6.75 -2.39 -0.02 1.84 16 23 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.05 1.66 6.48 -2.38 -0.02 1.64 16 25 H 0.00 -0.02 6.09 -2.39 -0.01 -0.04 16 26 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 27 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 28 H 0.04 1.06 6.51 -2.38 -0.02 1.04 16 29 H 0.04 1.76 6.03 -2.39 -0.01 1.75 16 30 H 0.06 2.02 6.32 -2.39 -0.02 2.01 16 31 H 0.05 1.25 6.94 -2.39 -0.02 1.23 16 32 H 0.08 2.16 8.00 -2.39 -0.02 2.14 16 33 H 0.18 5.23 8.06 -2.91 -0.02 5.20 16 34 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 35 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.20 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -71.78 300.37 3.38 -68.39 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: 1.04 Total: 6.55 kcal Atomic # 6 Polarization: -25.93 SS G_CDS: 6.25 Total: -19.68 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -5.93 Total: -103.90 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -71.78 3.38 -68.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570805877.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.159 kcal (2) G-P(sol) polarization free energy of solvation -71.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds