Wall clock time and date at job start Sun Mar 29 2020 22:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 115.56089 * 2 1 4 4 N 1.46903 * 109.47303 * 325.69506 * 3 2 1 5 5 C 1.46847 * 110.99649 * 294.21023 * 4 3 2 6 6 C 1.53035 * 109.52146 * 174.16445 * 5 4 3 7 7 C 1.53116 * 109.28410 * 59.17320 * 6 5 4 8 8 C 1.53000 * 109.52582 * 182.44062 * 7 6 5 9 9 C 1.50694 * 109.47117 * 294.68445 * 8 7 6 10 10 H 1.08000 * 120.00239 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00135 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99670 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 120.00096 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.46764 * 90.00413 * 13 11 9 15 15 H 1.48499 * 109.46616 * 210.00287 * 13 11 9 16 16 H 1.48494 * 109.46912 * 329.99950 * 13 11 9 17 17 C 1.53115 * 109.16163 * 302.35139 * 7 6 5 18 18 C 1.46845 * 111.00102 * 169.99966 * 4 3 2 19 19 C 1.53000 * 117.49776 * 145.69294 * 2 1 3 20 20 C 1.52997 * 117.49537 * 214.31748 * 2 1 3 21 21 H 1.09000 * 109.46919 * 274.30794 * 1 2 3 22 22 H 1.09000 * 109.47139 * 34.30150 * 1 2 3 23 23 H 1.08994 * 109.47047 * 154.31069 * 1 2 3 24 24 H 1.09004 * 109.46610 * 85.68977 * 3 2 1 25 25 H 1.08996 * 109.47111 * 205.68891 * 3 2 1 26 26 H 1.09006 * 109.46301 * 294.17536 * 5 4 3 27 27 H 1.08995 * 109.46811 * 54.14072 * 5 4 3 28 28 H 1.09005 * 109.50398 * 299.22967 * 6 5 4 29 29 H 1.09006 * 109.50543 * 179.11838 * 6 5 4 30 30 H 1.09002 * 109.51910 * 62.25154 * 7 6 5 31 31 H 1.08994 * 109.46561 * 54.68587 * 8 7 6 32 32 H 1.09001 * 109.47033 * 174.68350 * 8 7 6 33 33 H 0.96998 * 119.99501 * 179.97438 * 12 11 9 34 34 H 1.09006 * 109.50107 * 297.70996 * 17 7 6 35 35 H 1.09000 * 109.50341 * 177.58997 * 17 7 6 36 36 H 1.09004 * 109.45910 * 305.85428 * 18 4 3 37 37 H 1.08998 * 109.46209 * 65.81901 * 18 4 3 38 38 H 1.08990 * 117.49990 * 359.97438 * 19 2 1 39 39 H 1.09004 * 117.49237 * 214.97568 * 19 2 1 40 40 H 1.08999 * 117.49685 * 145.02116 * 20 2 1 41 41 H 1.08999 * 117.52022 * 359.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 7 1.3694 2.3157 -0.7806 5 6 1.3428 1.9353 -2.1987 6 6 0.3665 2.8409 -2.9528 7 6 0.8113 4.2985 -2.8043 8 6 -0.1946 5.2140 -3.5051 9 6 -0.1693 4.9463 -4.9878 10 1 0.4972 4.1977 -5.3902 11 6 -0.9977 5.6562 -5.8308 12 7 -1.8097 6.5674 -5.3409 13 14 -0.9669 5.3238 -7.6688 14 1 -1.9537 4.2637 -7.9967 15 1 -1.3140 6.5674 -8.4025 16 1 0.3916 4.8764 -8.0681 17 6 0.8774 4.6547 -1.3166 18 6 1.8389 3.6966 -0.6099 19 6 2.2365 -1.1210 0.7649 20 6 2.2364 -1.1209 -0.7651 21 1 -0.3633 0.0772 1.0248 22 1 -0.3633 0.8489 -0.5791 23 1 -0.3633 -0.9260 -0.4455 24 1 2.2773 1.7413 1.0248 25 1 3.1824 1.3085 -0.4455 26 1 2.3410 2.0445 -2.6228 27 1 1.0209 0.8980 -2.2906 28 1 -0.6346 2.7219 -2.5383 29 1 0.3587 2.5686 -4.0083 30 1 1.7961 4.4264 -3.2536 31 1 -1.1945 5.0190 -3.1176 32 1 0.0706 6.2548 -3.3192 33 1 -2.3923 7.0671 -5.9340 34 1 -0.1156 4.5642 -0.8763 35 1 1.2347 5.6782 -1.2030 36 1 1.8773 3.9384 0.4523 37 1 2.8347 3.7975 -1.0414 38 1 1.6113 -1.8583 1.2685 39 1 3.1716 -0.8752 1.2682 40 1 3.1715 -0.8750 -1.2684 41 1 1.6115 -1.8587 -1.2683 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575060385.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:44 Heat of formation + Delta-G solvation = 3.147009 kcal Electronic energy + Delta-G solvation = -17428.317753 eV Core-core repulsion = 14921.803444 eV Total energy + Delta-G solvation = -2506.514310 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.31874 -37.42196 -34.13191 -32.13472 -30.36146 -28.69530 -27.98418 -25.59562 -23.27854 -22.74407 -22.23248 -20.61734 -18.88658 -18.83585 -16.22566 -15.79818 -15.31249 -14.68126 -14.52311 -14.23352 -13.55438 -13.49970 -12.99361 -12.85893 -12.43681 -12.10051 -11.98056 -11.85700 -11.61253 -11.45138 -11.09027 -11.07909 -10.75772 -10.62268 -10.57185 -10.30672 -10.11364 -9.88264 -9.61893 -9.46724 -8.98939 -8.83184 -8.29384 -8.01281 -5.94306 -3.95508 3.34478 3.40838 3.43845 3.66995 4.12586 4.50112 4.69499 4.84433 4.91238 5.13500 5.38965 5.41360 5.43329 5.51218 5.53642 5.60820 5.71750 5.79075 5.82505 5.93290 5.98649 6.02828 6.04885 6.06627 6.18287 6.21314 6.31517 6.49380 6.55030 6.65970 6.74627 7.03788 7.16022 7.25144 7.42166 7.46692 7.74527 7.91604 8.06967 8.50292 9.11173 9.67797 11.17096 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.037450 B = 0.005168 C = 0.004826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.480116 B = 5416.469967 C = 5800.379877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.113 4.113 3 C 0.092 3.908 4 N -0.531 5.531 5 C 0.056 3.944 6 C -0.099 4.099 7 C -0.081 4.081 8 C 0.028 3.972 9 C -0.513 4.513 10 H 0.054 0.946 11 C 0.056 3.944 12 N -0.896 5.896 13 Si 0.888 3.112 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.275 1.275 17 C -0.111 4.111 18 C 0.059 3.941 19 C -0.179 4.179 20 C -0.180 4.180 21 H 0.052 0.948 22 H 0.087 0.913 23 H 0.045 0.955 24 H 0.073 0.927 25 H 0.029 0.971 26 H 0.023 0.977 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.016 0.984 32 H 0.013 0.987 33 H 0.259 0.741 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.026 0.974 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.426 -12.117 11.277 18.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.113 4.113 3 C -0.036 4.036 4 N -0.255 5.255 5 C -0.072 4.072 6 C -0.137 4.137 7 C -0.100 4.100 8 C -0.009 4.009 9 C -0.552 4.552 10 H 0.072 0.928 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.716 3.284 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.200 1.200 17 C -0.149 4.149 18 C -0.068 4.068 19 C -0.216 4.216 20 C -0.217 4.217 21 H 0.071 0.929 22 H 0.106 0.894 23 H 0.064 0.936 24 H 0.091 0.909 25 H 0.048 0.952 26 H 0.042 0.958 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.035 0.965 32 H 0.032 0.968 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.044 0.956 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.818 -11.997 11.395 17.895 hybrid contribution 0.891 -0.130 -1.362 1.633 sum 7.709 -12.127 10.032 17.525 Atomic orbital electron populations 1.21318 0.91255 1.02494 1.01916 1.21477 0.95768 0.90032 1.04064 1.21555 0.93338 0.90586 0.98139 1.61908 1.51994 1.01748 1.09861 1.22228 0.98467 0.99688 0.86808 1.21549 0.98139 0.94554 0.99478 1.21232 1.00156 0.95530 0.93092 1.19113 0.93495 0.93820 0.94462 1.21259 1.21326 1.20178 0.92397 0.92754 1.25014 0.95652 0.95285 0.98517 1.69968 1.24482 1.24233 1.34935 0.86662 0.78265 0.77599 0.85886 1.20726 1.21327 1.19985 1.21682 0.99227 0.97083 0.96903 1.22093 0.96707 0.88318 0.99723 1.23006 1.02355 1.01819 0.94430 1.23171 1.02446 1.01914 0.94159 0.92920 0.89429 0.93578 0.90912 0.95245 0.95849 0.91125 0.91940 0.91068 0.93175 0.96520 0.96827 0.93131 0.91601 0.92239 0.91746 0.95582 0.88939 0.89220 0.89252 0.88950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 9.27 37.16 0.34 -0.99 16 2 C -0.11 -1.28 1.54 -154.51 -0.24 -1.51 16 3 C 0.09 1.13 5.10 -3.82 -0.02 1.11 16 4 N -0.53 -7.73 3.42 -234.67 -0.80 -8.53 16 5 C 0.06 0.87 4.72 -3.83 -0.02 0.86 16 6 C -0.10 -1.89 5.15 -26.65 -0.14 -2.02 16 7 C -0.08 -1.68 2.20 -90.50 -0.20 -1.88 16 8 C 0.03 0.73 4.45 -27.89 -0.12 0.60 16 9 C -0.51 -14.42 8.45 -34.44 -0.29 -14.72 16 10 H 0.05 1.49 7.08 -52.49 -0.37 1.12 16 11 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 12 N -0.90 -27.14 13.29 55.43 0.74 -26.41 16 13 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 16 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 17 C -0.11 -1.95 5.38 -26.65 -0.14 -2.10 16 18 C 0.06 0.88 5.46 -3.84 -0.02 0.86 16 19 C -0.18 -1.71 9.97 -26.73 -0.27 -1.97 16 20 C -0.18 -1.86 9.62 -26.73 -0.26 -2.12 16 21 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.09 1.21 6.08 -51.93 -0.32 0.90 16 23 H 0.05 0.50 7.90 -51.93 -0.41 0.09 16 24 H 0.07 0.84 7.99 -51.93 -0.41 0.43 16 25 H 0.03 0.36 7.88 -51.93 -0.41 -0.05 16 26 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 1.04 6.34 -51.93 -0.33 0.71 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.07 1.44 7.05 -51.93 -0.37 1.08 16 30 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.85 8.02 -51.93 -0.42 0.43 16 37 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.09 0.92 8.05 -51.93 -0.42 0.50 16 41 H 0.09 0.92 8.05 -51.93 -0.42 0.50 16 LS Contribution 316.63 15.07 4.77 4.77 Total: -1.00 -29.12 316.63 -9.44 -38.55 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -7.65 Total: -2.78 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: -1.47 Total: -22.37 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: -0.07 Total: -34.94 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.12 -9.44 -38.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575060385.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.701 kcal (2) G-P(sol) polarization free energy of solvation -29.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds