Wall clock time and date at job start Sun Mar 29 2020 22:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46968 * 2 1 4 4 H 1.08995 * 109.47468 * 304.21070 * 3 2 1 5 5 C 1.50701 * 109.46918 * 184.20737 * 3 2 1 6 6 H 1.08002 * 120.00254 * 240.00104 * 5 3 2 7 7 C 1.37877 * 120.00222 * 60.00672 * 5 3 2 8 8 N 1.31521 * 119.99582 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00357 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47149 * 89.99825 * 9 7 5 11 11 H 1.48498 * 109.46762 * 209.99705 * 9 7 5 12 12 H 1.48496 * 109.46781 * 329.99796 * 9 7 5 13 13 N 1.46899 * 109.47158 * 64.21201 * 3 2 1 14 14 C 1.46898 * 111.00090 * 207.39677 * 13 3 2 15 15 H 1.08993 * 109.55965 * 32.77098 * 14 13 3 16 16 C 1.50800 * 109.55381 * 272.45443 * 14 13 3 17 17 C 1.31673 * 118.08469 * 135.30288 * 16 14 13 18 18 C 1.50515 * 116.92531 * 359.72529 * 17 16 14 19 19 C 1.49512 * 113.04611 * 84.56682 * 18 17 16 20 20 C 1.51390 * 117.51779 * 280.28552 * 19 18 17 21 21 C 1.53856 * 110.52271 * 73.80632 * 20 19 18 22 22 C 1.52723 * 109.55701 * 152.98491 * 14 13 3 23 23 H 1.08995 * 109.47083 * 54.89982 * 1 2 3 24 24 H 1.09003 * 109.46851 * 174.90085 * 1 2 3 25 25 H 1.08997 * 109.46582 * 294.89375 * 1 2 3 26 26 H 1.08994 * 109.47467 * 120.00533 * 2 1 3 27 27 H 1.09003 * 109.47096 * 240.00203 * 2 1 3 28 28 H 0.97002 * 120.00095 * 180.02562 * 8 7 5 29 29 H 1.00900 * 111.00091 * 83.43952 * 13 3 2 30 30 H 1.07997 * 120.95934 * 315.28486 * 16 14 13 31 31 H 1.07992 * 121.53320 * 179.70252 * 17 16 14 32 32 H 1.09005 * 108.77008 * 323.64333 * 18 17 16 33 33 H 1.09003 * 108.76903 * 205.49198 * 18 17 16 34 34 H 1.09002 * 107.83227 * 158.25383 * 19 18 17 35 35 H 1.08995 * 107.82918 * 42.32023 * 19 18 17 36 36 H 1.08997 * 109.26234 * 313.53706 * 20 19 18 37 37 H 1.08998 * 109.23513 * 194.06081 * 20 19 18 38 38 H 1.08999 * 109.79861 * 134.55565 * 21 20 19 39 39 H 1.08998 * 109.85207 * 13.70875 * 21 20 19 40 40 H 1.08999 * 109.61418 * 297.38042 * 22 14 13 41 41 H 1.08997 * 109.61998 * 57.74926 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6164 1.9777 -0.8498 5 6 3.5434 1.4438 -0.1042 6 1 4.1386 1.8919 0.6777 7 6 4.1591 0.8729 -1.1979 8 7 3.4343 0.3268 -2.1499 9 14 6.0226 0.8751 -1.3275 10 1 6.5644 -0.3534 -0.6932 11 1 6.4192 0.9097 -2.7581 12 1 6.5655 2.0708 -0.6342 13 7 1.6351 2.1050 1.2470 14 6 1.5034 3.5553 1.0540 15 1 1.1615 3.7587 0.0392 16 6 2.8387 4.2181 1.2815 17 6 3.2286 5.1376 0.4235 18 6 2.2984 5.4405 -0.7204 19 6 1.2388 6.4339 -0.3658 20 6 0.0383 5.9303 0.4069 21 6 0.4180 5.6512 1.8716 22 6 0.4949 4.1148 2.0551 23 1 -0.3633 0.5909 -0.8407 24 1 -0.3633 -1.0236 -0.0913 25 1 -0.3632 0.4326 0.9322 26 1 1.8934 -0.5139 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 3.8675 -0.0751 -2.9191 29 1 2.2813 1.8968 1.9934 30 1 3.4573 3.9466 2.1241 31 1 4.1721 5.6509 0.5355 32 1 1.8189 4.5143 -1.0373 33 1 2.8825 5.8328 -1.5530 34 1 0.8764 6.8804 -1.2919 35 1 1.7058 7.2249 0.2209 36 1 -0.3248 5.0108 -0.0520 37 1 -0.7497 6.6828 0.3767 38 1 -0.3414 6.0648 2.5351 39 1 1.3865 6.0987 2.0946 40 1 -0.4853 3.6747 1.8717 41 1 0.8175 3.8803 3.0695 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575932083.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:34 Heat of formation + Delta-G solvation = -0.726907 kcal Electronic energy + Delta-G solvation = -18190.518629 eV Core-core repulsion = 15683.836334 eV Total energy + Delta-G solvation = -2506.682295 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.89435 -35.63993 -32.97940 -32.74139 -31.47394 -29.63390 -26.66162 -25.62150 -23.99721 -22.38808 -21.28044 -20.15675 -19.39865 -17.74559 -16.36987 -15.59277 -14.91857 -14.48012 -14.24045 -13.65046 -13.52737 -13.26335 -12.82506 -12.67053 -12.32267 -11.93361 -11.58254 -11.32062 -11.12104 -11.02550 -10.86931 -10.81661 -10.64764 -10.58257 -10.23455 -10.18217 -9.95610 -9.56570 -9.52283 -9.28997 -8.97883 -8.34924 -8.25144 -7.19129 -5.94260 -4.04943 2.93658 3.28907 3.36163 3.39060 4.43778 4.98642 5.07826 5.25568 5.30084 5.38771 5.53748 5.55896 5.81613 5.87296 5.98514 6.00893 6.13134 6.19906 6.34012 6.39341 6.39805 6.42858 6.52150 6.53501 6.61227 6.67680 6.73535 6.75684 6.86602 7.18817 7.20410 7.28526 7.43714 7.54316 7.67226 7.83674 8.15299 8.22242 8.41261 8.72982 9.06992 9.61613 11.06201 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.022040 B = 0.009258 C = 0.007500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.139983 B = 3023.573186 C = 3732.664782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 C 0.218 3.782 4 H 0.029 0.971 5 C -0.531 4.531 6 H 0.054 0.946 7 C 0.066 3.934 8 N -0.887 5.887 9 Si 0.884 3.116 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.276 1.276 13 N -0.684 5.684 14 C 0.108 3.892 15 H 0.091 0.909 16 C -0.146 4.146 17 C -0.169 4.169 18 C -0.093 4.093 19 C -0.108 4.108 20 C -0.119 4.119 21 C -0.120 4.120 22 C -0.102 4.102 23 H 0.035 0.965 24 H 0.023 0.977 25 H 0.046 0.954 26 H 0.029 0.971 27 H 0.089 0.911 28 H 0.259 0.741 29 H 0.327 0.673 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.051 0.949 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.801 9.005 4.912 11.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.146 4.146 3 C 0.110 3.890 4 H 0.046 0.954 5 C -0.571 4.571 6 H 0.072 0.928 7 C -0.135 4.135 8 N -0.526 5.526 9 Si 0.712 3.288 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.311 5.311 14 C -0.002 4.002 15 H 0.109 0.891 16 C -0.166 4.166 17 C -0.189 4.189 18 C -0.130 4.130 19 C -0.145 4.145 20 C -0.156 4.156 21 C -0.158 4.158 22 C -0.141 4.141 23 H 0.054 0.946 24 H 0.042 0.958 25 H 0.065 0.935 26 H 0.048 0.952 27 H 0.108 0.892 28 H 0.069 0.931 29 H 0.143 0.857 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.484 8.767 4.611 11.323 hybrid contribution 2.341 0.195 -0.250 2.362 sum -3.143 8.963 4.361 10.451 Atomic orbital electron populations 1.21686 0.99103 0.98187 1.00316 1.21515 0.92001 0.99469 1.01609 1.19173 0.92800 0.90945 0.86115 0.95358 1.21842 0.92572 1.37044 1.05618 0.92807 1.24905 0.97580 0.95250 0.95805 1.69878 1.34649 1.38453 1.09639 0.86723 0.86654 0.78274 0.77113 1.20820 1.21347 1.20131 1.61004 1.53880 1.06178 1.10053 1.21019 0.91080 0.88576 0.99489 0.89112 1.23725 0.98498 0.95926 0.98449 1.22641 0.98717 1.00455 0.97050 1.19975 0.95919 1.00209 0.96884 1.20484 0.95647 0.98791 0.99595 1.21483 0.97089 1.01188 0.95862 1.22172 1.01071 0.96795 0.95784 1.21882 0.99410 0.93642 0.99123 0.94553 0.95776 0.93474 0.95177 0.89241 0.93062 0.85652 0.88342 0.88222 0.90291 0.92508 0.93188 0.93037 0.91521 0.92670 0.92842 0.91635 0.91843 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.73 37.16 0.36 -2.44 16 2 C -0.11 -2.57 5.45 -26.73 -0.15 -2.72 16 3 C 0.22 5.28 1.99 -68.86 -0.14 5.14 16 4 H 0.03 0.77 7.36 -51.93 -0.38 0.39 16 5 C -0.53 -14.04 7.86 -34.44 -0.27 -14.31 16 6 H 0.05 1.43 7.17 -52.49 -0.38 1.05 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.89 -25.02 11.30 55.43 0.63 -24.39 16 9 Si 0.88 21.33 29.54 -169.99 -5.02 16.31 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.68 -14.04 5.57 -102.28 -0.57 -14.61 16 14 C 0.11 1.96 1.98 -68.96 -0.14 1.82 16 15 H 0.09 1.78 2.79 -51.93 -0.15 1.64 16 16 C -0.15 -2.62 6.55 -36.13 -0.24 -2.85 16 17 C -0.17 -2.92 9.28 -36.27 -0.34 -3.25 16 18 C -0.09 -1.51 5.13 -29.70 -0.15 -1.67 16 19 C -0.11 -1.46 4.90 -29.27 -0.14 -1.60 16 20 C -0.12 -1.55 5.42 -27.10 -0.15 -1.70 16 21 C -0.12 -1.58 5.70 -25.27 -0.14 -1.73 16 22 C -0.10 -1.55 5.21 -25.86 -0.13 -1.69 16 23 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.93 7.87 -51.93 -0.41 0.52 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.09 2.39 5.97 -51.93 -0.31 2.08 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.33 6.75 8.06 -39.29 -0.32 6.43 16 30 H 0.10 1.75 8.06 -52.49 -0.42 1.32 16 31 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 32 H 0.08 1.49 5.63 -51.93 -0.29 1.20 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.66 7.71 -51.93 -0.40 0.26 16 36 H 0.07 0.96 6.57 -51.93 -0.34 0.62 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.90 6.29 -51.93 -0.33 0.57 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 305.35 15.07 4.60 4.60 Total: -1.00 -26.76 305.35 -9.17 -35.93 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -7.09 Total: 7.44 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: -1.72 Total: -25.28 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.06 Total: -39.00 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -26.76 -9.17 -35.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575932083.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.204 kcal (2) G-P(sol) polarization free energy of solvation -26.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds