Wall clock time and date at job start Sun Mar 29 2020 22:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46968 * 2 1 4 4 H 1.08995 * 109.47468 * 304.21070 * 3 2 1 5 5 C 1.50701 * 109.46918 * 184.20737 * 3 2 1 6 6 H 1.08002 * 120.00254 * 240.00104 * 5 3 2 7 7 C 1.37877 * 120.00222 * 60.00672 * 5 3 2 8 8 N 1.31521 * 119.99582 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00357 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47149 * 89.99825 * 9 7 5 11 11 H 1.48498 * 109.46762 * 209.99705 * 9 7 5 12 12 H 1.48496 * 109.46781 * 329.99796 * 9 7 5 13 13 N 1.46899 * 109.47158 * 64.21201 * 3 2 1 14 14 C 1.46898 * 111.00090 * 207.39677 * 13 3 2 15 15 H 1.08993 * 109.55965 * 32.77098 * 14 13 3 16 16 C 1.50800 * 109.55381 * 272.45443 * 14 13 3 17 17 C 1.31673 * 118.08469 * 135.30288 * 16 14 13 18 18 C 1.50515 * 116.92531 * 359.72529 * 17 16 14 19 19 C 1.49512 * 113.04611 * 84.56682 * 18 17 16 20 20 C 1.51390 * 117.51779 * 280.28552 * 19 18 17 21 21 C 1.53856 * 110.52271 * 73.80632 * 20 19 18 22 22 C 1.52723 * 109.55701 * 152.98491 * 14 13 3 23 23 H 1.08995 * 109.47083 * 54.89982 * 1 2 3 24 24 H 1.09003 * 109.46851 * 174.90085 * 1 2 3 25 25 H 1.08997 * 109.46582 * 294.89375 * 1 2 3 26 26 H 1.08994 * 109.47467 * 120.00533 * 2 1 3 27 27 H 1.09003 * 109.47096 * 240.00203 * 2 1 3 28 28 H 0.97002 * 120.00095 * 180.02562 * 8 7 5 29 29 H 1.00900 * 111.00091 * 83.43952 * 13 3 2 30 30 H 1.07997 * 120.95934 * 315.28486 * 16 14 13 31 31 H 1.07992 * 121.53320 * 179.70252 * 17 16 14 32 32 H 1.09005 * 108.77008 * 323.64333 * 18 17 16 33 33 H 1.09003 * 108.76903 * 205.49198 * 18 17 16 34 34 H 1.09002 * 107.83227 * 158.25383 * 19 18 17 35 35 H 1.08995 * 107.82918 * 42.32023 * 19 18 17 36 36 H 1.08997 * 109.26234 * 313.53706 * 20 19 18 37 37 H 1.08998 * 109.23513 * 194.06081 * 20 19 18 38 38 H 1.08999 * 109.79861 * 134.55565 * 21 20 19 39 39 H 1.08998 * 109.85207 * 13.70875 * 21 20 19 40 40 H 1.08999 * 109.61418 * 297.38042 * 22 14 13 41 41 H 1.08997 * 109.61998 * 57.74926 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6164 1.9777 -0.8498 5 6 3.5434 1.4438 -0.1042 6 1 4.1386 1.8919 0.6777 7 6 4.1591 0.8729 -1.1979 8 7 3.4343 0.3268 -2.1499 9 14 6.0226 0.8751 -1.3275 10 1 6.5644 -0.3534 -0.6932 11 1 6.4192 0.9097 -2.7581 12 1 6.5655 2.0708 -0.6342 13 7 1.6351 2.1050 1.2470 14 6 1.5034 3.5553 1.0540 15 1 1.1615 3.7587 0.0392 16 6 2.8387 4.2181 1.2815 17 6 3.2286 5.1376 0.4235 18 6 2.2984 5.4405 -0.7204 19 6 1.2388 6.4339 -0.3658 20 6 0.0383 5.9303 0.4069 21 6 0.4180 5.6512 1.8716 22 6 0.4949 4.1148 2.0551 23 1 -0.3633 0.5909 -0.8407 24 1 -0.3633 -1.0236 -0.0913 25 1 -0.3632 0.4326 0.9322 26 1 1.8934 -0.5139 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 3.8675 -0.0751 -2.9191 29 1 2.2813 1.8968 1.9934 30 1 3.4573 3.9466 2.1241 31 1 4.1721 5.6509 0.5355 32 1 1.8189 4.5143 -1.0373 33 1 2.8825 5.8328 -1.5530 34 1 0.8764 6.8804 -1.2919 35 1 1.7058 7.2249 0.2209 36 1 -0.3248 5.0108 -0.0520 37 1 -0.7497 6.6828 0.3767 38 1 -0.3414 6.0648 2.5351 39 1 1.3865 6.0987 2.0946 40 1 -0.4853 3.6747 1.8717 41 1 0.8175 3.8803 3.0695 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575932083.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:34 Heat of formation + Delta-G solvation = -14.623715 kcal Electronic energy + Delta-G solvation = -18191.121240 eV Core-core repulsion = 15683.836334 eV Total energy + Delta-G solvation = -2507.284906 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.24969 -37.35460 -34.62438 -33.97630 -33.34530 -31.19651 -28.41312 -27.02028 -25.55585 -24.15635 -22.56764 -21.38948 -21.24991 -19.24191 -18.27139 -17.07413 -16.64428 -16.09875 -15.46545 -15.22847 -14.92584 -14.70117 -14.54061 -14.16722 -13.73828 -13.34136 -13.20053 -13.16837 -12.92157 -12.70591 -12.54102 -12.23403 -12.09266 -12.03698 -11.85488 -11.56414 -11.46634 -11.18472 -11.12589 -10.87260 -10.70008 -10.42129 -9.67999 -8.94497 -8.00449 -6.19347 1.35936 1.38297 1.46088 1.53383 2.41631 3.19620 3.71116 3.81494 4.04145 4.18987 4.25145 4.31594 4.56760 4.60309 4.64026 4.66389 4.78392 4.83316 4.84348 4.95851 5.05680 5.10777 5.17782 5.23026 5.29403 5.32685 5.41071 5.43795 5.45173 5.51138 5.57503 5.65296 5.69082 5.80977 5.88749 6.09567 6.17426 6.27584 6.51535 6.91619 7.09729 7.50548 8.96149 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.022040 B = 0.009258 C = 0.007500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.139983 B = 3023.573186 C = 3732.664782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.105 4.105 3 C 0.229 3.771 4 H -0.006 1.006 5 C -0.536 4.536 6 H 0.050 0.950 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.941 3.059 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.677 5.677 14 C 0.109 3.891 15 H 0.075 0.925 16 C -0.161 4.161 17 C -0.169 4.169 18 C -0.091 4.091 19 C -0.105 4.105 20 C -0.118 4.118 21 C -0.113 4.113 22 C -0.096 4.096 23 H 0.028 0.972 24 H 0.042 0.958 25 H 0.058 0.942 26 H 0.027 0.973 27 H 0.059 0.941 28 H 0.258 0.742 29 H 0.327 0.673 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.048 0.952 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.006 10.315 5.941 12.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.144 4.144 3 C 0.120 3.880 4 H 0.012 0.988 5 C -0.575 4.575 6 H 0.068 0.932 7 C -0.180 4.180 8 N -0.553 5.553 9 Si 0.768 3.232 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.304 5.304 14 C 0.000 4.000 15 H 0.092 0.908 16 C -0.180 4.180 17 C -0.188 4.188 18 C -0.128 4.128 19 C -0.143 4.143 20 C -0.156 4.156 21 C -0.151 4.151 22 C -0.134 4.134 23 H 0.048 0.952 24 H 0.061 0.939 25 H 0.077 0.923 26 H 0.045 0.955 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.144 0.856 30 H 0.117 0.883 31 H 0.130 0.870 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.694 10.089 5.654 12.891 hybrid contribution 2.406 -0.193 -0.581 2.483 sum -3.287 9.896 5.074 11.596 Atomic orbital electron populations 1.21539 0.96514 0.99399 1.00575 1.21392 0.94329 0.98770 0.99888 1.18895 0.91549 0.91067 0.86516 0.98799 1.22096 0.93786 1.36339 1.05292 0.93151 1.25580 1.01323 0.95303 0.95780 1.70008 1.36013 1.39250 1.10046 0.85827 0.82209 0.78281 0.76926 1.20398 1.21310 1.19813 1.60964 1.53292 1.07918 1.08267 1.21054 0.92231 0.87037 0.99687 0.90755 1.23712 0.98554 0.96692 0.99069 1.22897 0.99145 1.00124 0.96684 1.19987 0.96545 0.99533 0.96706 1.20437 0.95108 0.98063 1.00644 1.21493 0.97457 1.01084 0.95531 1.22137 1.01753 0.94909 0.96305 1.21815 0.98105 0.95232 0.98249 0.95241 0.93888 0.92338 0.95458 0.92246 0.93224 0.85621 0.88261 0.86989 0.93447 0.92252 0.91886 0.91736 0.93343 0.90221 0.90520 0.91858 0.92097 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.02 9.73 71.98 0.70 -4.32 16 2 C -0.10 -5.10 5.45 30.59 0.17 -4.93 16 3 C 0.23 11.32 1.99 44.17 0.09 11.41 16 4 H -0.01 -0.33 7.36 -2.39 -0.02 -0.35 16 5 C -0.54 -28.66 7.86 25.60 0.20 -28.46 16 6 H 0.05 2.68 7.17 -2.91 -0.02 2.66 16 7 C 0.02 1.06 5.29 84.65 0.45 1.51 16 8 N -0.91 -52.59 11.30 21.45 0.24 -52.35 16 9 Si 0.94 44.02 29.54 68.60 2.03 46.05 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 11 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 12 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 13 N -0.68 -27.89 5.57 -477.49 -2.66 -30.55 16 14 C 0.11 3.94 1.98 44.11 0.09 4.03 16 15 H 0.07 2.99 2.79 -2.39 -0.01 2.98 16 16 C -0.16 -5.66 6.55 25.05 0.16 -5.50 16 17 C -0.17 -5.69 9.28 24.96 0.23 -5.46 16 18 C -0.09 -2.92 5.13 28.67 0.15 -2.77 16 19 C -0.11 -2.65 4.90 28.95 0.14 -2.51 16 20 C -0.12 -2.85 5.42 30.36 0.16 -2.68 16 21 C -0.11 -2.70 5.70 31.54 0.18 -2.52 16 22 C -0.10 -2.78 5.21 31.16 0.16 -2.61 16 23 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.06 2.24 7.87 -2.39 -0.02 2.22 16 26 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.06 3.26 5.97 -2.39 -0.01 3.24 16 28 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 29 H 0.33 13.45 8.06 -89.69 -0.72 12.73 16 30 H 0.10 3.45 8.06 -2.91 -0.02 3.43 16 31 H 0.11 3.45 8.06 -2.91 -0.02 3.43 16 32 H 0.05 1.84 5.63 -2.38 -0.01 1.83 16 33 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.06 1.48 7.71 -2.39 -0.02 1.46 16 36 H 0.05 1.35 6.57 -2.39 -0.02 1.34 16 37 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.06 1.56 6.29 -2.39 -0.02 1.55 16 40 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -57.26 305.35 2.76 -54.51 By element: Atomic # 1 Polarization: 26.90 SS G_CDS: 0.26 Total: 27.17 kcal Atomic # 6 Polarization: -47.70 SS G_CDS: 2.88 Total: -44.82 kcal Atomic # 7 Polarization: -80.48 SS G_CDS: -2.42 Total: -82.90 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -57.26 2.76 -54.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575932083.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.882 kcal (2) G-P(sol) polarization free energy of solvation -57.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds