Wall clock time and date at job start Sun Mar 29 2020 22:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47156 * 2 1 4 4 H 1.09006 * 109.46817 * 305.84468 * 3 2 1 5 5 C 1.50693 * 109.47052 * 185.84463 * 3 2 1 6 6 H 1.07996 * 120.00194 * 245.24584 * 5 3 2 7 7 C 1.37879 * 120.00506 * 65.24479 * 5 3 2 8 8 N 1.31520 * 119.99801 * 8.89227 * 7 5 3 9 9 Si 1.86797 * 120.00444 * 188.89392 * 7 5 3 10 10 H 1.48499 * 109.47311 * 270.00022 * 9 7 5 11 11 H 1.48504 * 109.47132 * 149.99975 * 9 7 5 12 12 H 1.48500 * 109.47079 * 30.00189 * 9 7 5 13 13 N 1.46894 * 109.46977 * 65.84367 * 3 2 1 14 14 C 1.46905 * 110.99739 * 207.06791 * 13 3 2 15 15 H 1.09001 * 108.73129 * 325.27170 * 14 13 3 16 16 C 1.50513 * 108.77039 * 83.57498 * 14 13 3 17 17 C 1.31661 * 116.92013 * 205.48735 * 16 14 13 18 18 C 1.50804 * 118.08762 * 359.72555 * 17 16 14 19 19 C 1.52712 * 108.95720 * 255.13548 * 18 17 16 20 20 C 1.54936 * 108.56612 * 57.81935 * 19 18 17 21 21 C 1.53858 * 107.75129 * 56.99679 * 20 19 18 22 22 C 1.49517 * 108.76507 * 207.08904 * 14 13 3 23 23 H 1.08999 * 109.47153 * 300.46837 * 1 2 3 24 24 H 1.09005 * 109.47207 * 60.46741 * 1 2 3 25 25 H 1.08998 * 109.46998 * 180.46108 * 1 2 3 26 26 H 1.09003 * 109.47392 * 240.00240 * 2 1 3 27 27 H 1.09000 * 109.47298 * 119.99734 * 2 1 3 28 28 H 0.96999 * 119.99938 * 359.28946 * 8 7 5 29 29 H 1.00899 * 111.00131 * 331.01521 * 13 3 2 30 30 H 1.07997 * 121.54179 * 25.51108 * 16 14 13 31 31 H 1.08009 * 120.95711 * 179.75119 * 17 16 14 32 32 H 1.09003 * 109.55558 * 14.98385 * 18 17 16 33 33 H 1.09006 * 109.55558 * 135.30153 * 18 17 16 34 34 H 1.09001 * 109.62132 * 177.54073 * 19 18 17 35 35 H 1.08996 * 109.63003 * 298.09613 * 19 18 17 36 36 H 1.08996 * 109.80380 * 176.55884 * 20 19 18 37 37 H 1.08997 * 109.80130 * 297.43478 * 20 19 18 38 38 H 1.09000 * 109.26643 * 14.38956 * 21 20 19 39 39 H 1.08996 * 109.26189 * 133.88586 * 21 20 19 40 40 H 1.09001 * 107.82963 * 281.39194 * 22 14 13 41 41 H 1.08993 * 107.83668 * 37.32374 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5937 1.9857 -0.8331 5 6 3.5400 1.4450 -0.1447 6 1 4.1597 1.8084 0.6617 7 6 4.1214 0.9832 -1.3065 8 7 3.3723 0.7056 -2.3513 9 14 5.9727 0.7519 -1.3966 10 1 6.6060 2.0079 -1.8728 11 1 6.2885 -0.3503 -2.3404 12 1 6.4956 0.4141 -0.0484 13 7 1.6689 2.0931 1.2637 14 6 1.5399 3.5461 1.0897 15 1 2.2791 3.8784 0.3608 16 6 0.1649 3.8500 0.5581 17 6 0.0247 4.9635 -0.1304 18 6 1.2388 5.8371 -0.3226 19 6 1.1255 7.0527 0.5948 20 6 0.9938 6.5570 2.0567 21 6 2.2165 5.6754 2.3651 22 6 1.8228 4.2140 2.3971 23 1 -0.3633 0.5211 0.8857 24 1 -0.3634 0.5066 -0.8942 25 1 -0.3633 -1.0276 0.0083 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.4099 0.8158 -2.3012 29 1 0.8199 1.6971 1.6385 30 1 -0.6682 3.1857 0.7336 31 1 -0.9324 5.2434 -0.5453 32 1 2.1374 5.2733 -0.0719 33 1 1.2906 6.1668 -1.3603 34 1 2.0186 7.6699 0.4966 35 1 0.2441 7.6343 0.3248 36 1 0.9728 7.4096 2.7353 37 1 0.0801 5.9731 2.1677 38 1 2.9728 5.8273 1.5950 39 1 2.6282 5.9577 3.3340 40 1 0.9321 4.1217 3.0187 41 1 2.6252 3.6627 2.8869 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575932084.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:36 Heat of formation + Delta-G solvation = -0.501379 kcal Electronic energy + Delta-G solvation = -18037.291200 eV Core-core repulsion = 15530.618684 eV Total energy + Delta-G solvation = -2506.672516 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.06046 -36.15712 -33.30840 -32.73986 -31.58277 -29.57811 -26.48836 -25.95918 -23.92245 -22.69378 -21.23881 -20.42900 -19.74505 -17.87022 -16.63103 -15.74291 -14.95716 -14.54904 -14.31954 -13.89112 -13.67616 -13.51015 -13.10094 -12.71623 -12.35794 -12.30460 -11.74168 -11.60171 -11.21034 -11.10542 -11.01992 -10.71748 -10.68842 -10.46462 -10.40165 -10.15151 -10.05337 -9.91965 -9.85379 -9.43460 -8.62895 -8.50658 -8.28145 -7.23743 -6.24669 -3.94290 2.60713 3.47134 3.51795 3.67587 4.58214 4.88659 5.00267 5.17386 5.21863 5.35998 5.37586 5.42622 5.67643 5.72024 5.82747 5.88292 5.93687 5.94620 5.99158 6.12866 6.15846 6.19551 6.26122 6.35364 6.43483 6.46800 6.58753 6.65694 6.73897 6.75808 6.87327 6.97159 7.03096 7.15096 7.31256 7.46607 8.12471 8.23967 8.55173 8.76360 9.01593 9.75357 11.10348 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.022317 B = 0.008111 C = 0.007041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.331876 B = 3451.224246 C = 3975.658178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C 0.209 3.791 4 H -0.004 1.004 5 C -0.575 4.575 6 H 0.054 0.946 7 C 0.015 3.985 8 N -0.917 5.917 9 Si 1.067 2.933 10 H -0.291 1.291 11 H -0.286 1.286 12 H -0.289 1.289 13 N -0.676 5.676 14 C 0.117 3.883 15 H 0.093 0.907 16 C -0.172 4.172 17 C -0.162 4.162 18 C -0.110 4.110 19 C -0.110 4.110 20 C -0.121 4.121 21 C -0.115 4.115 22 C -0.102 4.102 23 H 0.041 0.959 24 H 0.043 0.957 25 H 0.040 0.960 26 H 0.070 0.930 27 H 0.051 0.949 28 H 0.269 0.731 29 H 0.315 0.685 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.044 0.956 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.913 8.864 6.646 12.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.167 4.167 3 C 0.101 3.899 4 H 0.014 0.986 5 C -0.614 4.614 6 H 0.073 0.927 7 C -0.188 4.188 8 N -0.554 5.554 9 Si 0.896 3.104 10 H -0.217 1.217 11 H -0.212 1.212 12 H -0.215 1.215 13 N -0.306 5.306 14 C 0.007 3.993 15 H 0.111 0.889 16 C -0.192 4.192 17 C -0.180 4.180 18 C -0.147 4.147 19 C -0.147 4.147 20 C -0.159 4.159 21 C -0.153 4.153 22 C -0.140 4.140 23 H 0.060 0.940 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.088 0.912 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.132 0.868 30 H 0.122 0.878 31 H 0.118 0.882 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.995 8.391 5.878 10.997 hybrid contribution -2.329 0.423 0.418 2.404 sum -6.324 8.815 6.296 12.543 Atomic orbital electron populations 1.21890 0.98965 0.99919 1.00147 1.21850 0.91974 1.00862 1.02032 1.19263 0.96178 0.89104 0.85335 0.98621 1.21984 0.90926 1.45208 1.03296 0.92730 1.25737 1.06645 0.94291 0.92140 1.70778 1.07401 1.47046 1.30148 0.83575 0.74685 0.76711 0.75398 1.21748 1.21170 1.21466 1.60817 1.37234 1.01524 1.31034 1.20000 0.92841 0.89889 0.96560 0.88918 1.23973 0.99008 0.96984 0.99211 1.22861 0.98296 0.96649 1.00237 1.21030 0.98112 0.96361 0.99149 1.21828 1.00983 0.96867 0.95072 1.22213 0.99003 0.98830 0.95821 1.21451 0.97755 0.94902 1.01234 1.20487 1.01460 0.94551 0.97502 0.94009 0.93801 0.94086 0.91165 0.92992 0.91998 0.86765 0.87792 0.88183 0.89235 0.92082 0.92095 0.92643 0.92786 0.91512 0.91710 0.92410 0.93751 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.76 37.16 0.36 -2.49 16 2 C -0.13 -2.96 5.20 -26.73 -0.14 -3.10 16 3 C 0.21 5.15 1.41 -68.87 -0.10 5.05 16 4 H 0.00 -0.10 6.89 -51.93 -0.36 -0.46 16 5 C -0.58 -16.07 8.51 -34.44 -0.29 -16.36 16 6 H 0.05 1.57 7.83 -52.49 -0.41 1.16 16 7 C 0.02 0.43 5.16 -17.82 -0.09 0.34 16 8 N -0.92 -27.36 12.96 55.43 0.72 -26.64 16 9 Si 1.07 25.52 29.91 -169.99 -5.08 20.44 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.68 -14.28 5.88 -104.10 -0.61 -14.90 16 14 C 0.12 2.19 1.71 -70.67 -0.12 2.07 16 15 H 0.09 2.02 5.13 -51.93 -0.27 1.75 16 16 C -0.17 -2.90 8.16 -36.27 -0.30 -3.20 16 17 C -0.16 -2.50 8.55 -36.13 -0.31 -2.81 16 18 C -0.11 -1.64 5.42 -27.98 -0.15 -1.79 16 19 C -0.11 -1.36 5.60 -25.86 -0.14 -1.50 16 20 C -0.12 -1.50 5.70 -25.26 -0.14 -1.64 16 21 C -0.12 -1.59 5.42 -27.10 -0.15 -1.73 16 22 C -0.10 -1.64 4.53 -29.27 -0.13 -1.78 16 23 H 0.04 0.71 6.47 -51.93 -0.34 0.37 16 24 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 1.80 6.36 -51.93 -0.33 1.47 16 27 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.27 8.01 6.13 -40.82 -0.25 7.76 16 29 H 0.31 6.10 6.19 -39.29 -0.24 5.86 16 30 H 0.10 1.69 7.97 -52.49 -0.42 1.27 16 31 H 0.10 1.39 8.06 -52.48 -0.42 0.97 16 32 H 0.09 1.53 3.56 -51.93 -0.18 1.35 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.88 6.28 -51.93 -0.33 0.55 16 38 H 0.06 0.94 6.57 -51.93 -0.34 0.60 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.04 0.67 7.71 -51.93 -0.40 0.27 16 41 H 0.07 1.24 8.00 -51.93 -0.42 0.83 16 LS Contribution 303.48 15.07 4.57 4.57 Total: -1.00 -28.89 303.48 -8.99 -37.88 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -6.88 Total: 7.60 kcal Atomic # 6 Polarization: -27.25 SS G_CDS: -1.70 Total: -28.95 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 0.11 Total: -41.54 kcal Atomic # 14 Polarization: 25.52 SS G_CDS: -5.08 Total: 20.44 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.89 -8.99 -37.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575932084.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.383 kcal (2) G-P(sol) polarization free energy of solvation -28.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds