Wall clock time and date at job start Sun Mar 29 2020 22:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47156 * 2 1 4 4 H 1.09006 * 109.46817 * 305.84468 * 3 2 1 5 5 C 1.50693 * 109.47052 * 185.84463 * 3 2 1 6 6 H 1.07996 * 120.00194 * 245.24584 * 5 3 2 7 7 C 1.37879 * 120.00506 * 65.24479 * 5 3 2 8 8 N 1.31520 * 119.99801 * 8.89227 * 7 5 3 9 9 Si 1.86797 * 120.00444 * 188.89392 * 7 5 3 10 10 H 1.48499 * 109.47311 * 270.00022 * 9 7 5 11 11 H 1.48504 * 109.47132 * 149.99975 * 9 7 5 12 12 H 1.48500 * 109.47079 * 30.00189 * 9 7 5 13 13 N 1.46894 * 109.46977 * 65.84367 * 3 2 1 14 14 C 1.46905 * 110.99739 * 207.06791 * 13 3 2 15 15 H 1.09001 * 108.73129 * 325.27170 * 14 13 3 16 16 C 1.50513 * 108.77039 * 83.57498 * 14 13 3 17 17 C 1.31661 * 116.92013 * 205.48735 * 16 14 13 18 18 C 1.50804 * 118.08762 * 359.72555 * 17 16 14 19 19 C 1.52712 * 108.95720 * 255.13548 * 18 17 16 20 20 C 1.54936 * 108.56612 * 57.81935 * 19 18 17 21 21 C 1.53858 * 107.75129 * 56.99679 * 20 19 18 22 22 C 1.49517 * 108.76507 * 207.08904 * 14 13 3 23 23 H 1.08999 * 109.47153 * 300.46837 * 1 2 3 24 24 H 1.09005 * 109.47207 * 60.46741 * 1 2 3 25 25 H 1.08998 * 109.46998 * 180.46108 * 1 2 3 26 26 H 1.09003 * 109.47392 * 240.00240 * 2 1 3 27 27 H 1.09000 * 109.47298 * 119.99734 * 2 1 3 28 28 H 0.96999 * 119.99938 * 359.28946 * 8 7 5 29 29 H 1.00899 * 111.00131 * 331.01521 * 13 3 2 30 30 H 1.07997 * 121.54179 * 25.51108 * 16 14 13 31 31 H 1.08009 * 120.95711 * 179.75119 * 17 16 14 32 32 H 1.09003 * 109.55558 * 14.98385 * 18 17 16 33 33 H 1.09006 * 109.55558 * 135.30153 * 18 17 16 34 34 H 1.09001 * 109.62132 * 177.54073 * 19 18 17 35 35 H 1.08996 * 109.63003 * 298.09613 * 19 18 17 36 36 H 1.08996 * 109.80380 * 176.55884 * 20 19 18 37 37 H 1.08997 * 109.80130 * 297.43478 * 20 19 18 38 38 H 1.09000 * 109.26643 * 14.38956 * 21 20 19 39 39 H 1.08996 * 109.26189 * 133.88586 * 21 20 19 40 40 H 1.09001 * 107.82963 * 281.39194 * 22 14 13 41 41 H 1.08993 * 107.83668 * 37.32374 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5937 1.9857 -0.8331 5 6 3.5400 1.4450 -0.1447 6 1 4.1597 1.8084 0.6617 7 6 4.1214 0.9832 -1.3065 8 7 3.3723 0.7056 -2.3513 9 14 5.9727 0.7519 -1.3966 10 1 6.6060 2.0079 -1.8728 11 1 6.2885 -0.3503 -2.3404 12 1 6.4956 0.4141 -0.0484 13 7 1.6689 2.0931 1.2637 14 6 1.5399 3.5461 1.0897 15 1 2.2791 3.8784 0.3608 16 6 0.1649 3.8500 0.5581 17 6 0.0247 4.9635 -0.1304 18 6 1.2388 5.8371 -0.3226 19 6 1.1255 7.0527 0.5948 20 6 0.9938 6.5570 2.0567 21 6 2.2165 5.6754 2.3651 22 6 1.8228 4.2140 2.3971 23 1 -0.3633 0.5211 0.8857 24 1 -0.3634 0.5066 -0.8942 25 1 -0.3633 -1.0276 0.0083 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.4099 0.8158 -2.3012 29 1 0.8199 1.6971 1.6385 30 1 -0.6682 3.1857 0.7336 31 1 -0.9324 5.2434 -0.5453 32 1 2.1374 5.2733 -0.0719 33 1 1.2906 6.1668 -1.3603 34 1 2.0186 7.6699 0.4966 35 1 0.2441 7.6343 0.3248 36 1 0.9728 7.4096 2.7353 37 1 0.0801 5.9731 2.1677 38 1 2.9728 5.8273 1.5950 39 1 2.6282 5.9577 3.3340 40 1 0.9321 4.1217 3.0187 41 1 2.6252 3.6627 2.8869 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575932084.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:36 Heat of formation + Delta-G solvation = -16.841204 kcal Electronic energy + Delta-G solvation = -18037.999748 eV Core-core repulsion = 15530.618684 eV Total energy + Delta-G solvation = -2507.381064 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.42222 -37.85366 -34.94896 -33.96279 -33.46294 -31.08260 -28.10927 -27.42779 -25.54062 -24.45366 -22.59577 -21.68518 -21.46908 -19.23375 -18.70441 -17.20230 -16.50445 -15.89449 -15.67470 -15.54288 -15.38215 -14.81387 -14.53550 -14.29659 -14.07339 -13.66205 -13.22951 -13.16077 -12.89704 -12.63237 -12.41827 -12.30921 -12.21274 -11.94811 -11.90210 -11.80529 -11.71947 -11.32790 -11.26195 -10.77493 -10.64483 -10.44256 -9.81056 -9.07198 -8.49800 -6.22400 1.31723 1.51424 1.60037 1.78370 2.58036 3.22268 3.46903 3.72998 4.02624 4.07960 4.17877 4.20299 4.29848 4.36654 4.41368 4.48655 4.52865 4.57495 4.71324 4.81582 4.88631 4.96218 4.97940 5.05730 5.09538 5.12577 5.18605 5.25191 5.33723 5.34850 5.41084 5.47903 5.55622 5.58936 5.70754 5.90965 6.10710 6.22631 6.59210 6.66363 7.01428 7.54642 8.82606 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.022317 B = 0.008111 C = 0.007041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.331876 B = 3451.224246 C = 3975.658178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.123 4.123 3 C 0.218 3.782 4 H -0.035 1.035 5 C -0.586 4.586 6 H 0.038 0.962 7 C -0.031 4.031 8 N -0.937 5.937 9 Si 1.110 2.890 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.275 1.275 13 N -0.681 5.681 14 C 0.124 3.876 15 H 0.056 0.944 16 C -0.193 4.193 17 C -0.148 4.148 18 C -0.115 4.115 19 C -0.104 4.104 20 C -0.116 4.116 21 C -0.113 4.113 22 C -0.096 4.096 23 H 0.062 0.938 24 H 0.038 0.962 25 H 0.063 0.937 26 H 0.038 0.962 27 H 0.048 0.952 28 H 0.258 0.742 29 H 0.326 0.674 30 H 0.113 0.887 31 H 0.123 0.877 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.051 0.949 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.784 10.080 7.698 14.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.162 4.162 3 C 0.110 3.890 4 H -0.018 1.018 5 C -0.625 4.625 6 H 0.057 0.943 7 C -0.229 4.229 8 N -0.576 5.576 9 Si 0.933 3.067 10 H -0.204 1.204 11 H -0.208 1.208 12 H -0.201 1.201 13 N -0.312 5.312 14 C 0.015 3.985 15 H 0.074 0.926 16 C -0.213 4.213 17 C -0.166 4.166 18 C -0.152 4.152 19 C -0.141 4.141 20 C -0.153 4.153 21 C -0.151 4.151 22 C -0.134 4.134 23 H 0.081 0.919 24 H 0.057 0.943 25 H 0.082 0.918 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.145 0.855 30 H 0.131 0.869 31 H 0.141 0.859 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.885 9.623 6.952 12.837 hybrid contribution -2.070 0.088 0.098 2.075 sum -6.955 9.711 7.049 13.870 Atomic orbital electron populations 1.21759 0.95363 1.01726 1.00868 1.21682 0.95202 0.99071 1.00219 1.18993 0.94272 0.90011 0.85764 1.01757 1.22276 0.92859 1.44660 1.02722 0.94333 1.27032 1.10283 0.93733 0.91884 1.70888 1.06942 1.48798 1.30923 0.83019 0.70359 0.77209 0.76108 1.20379 1.20837 1.20058 1.60730 1.38168 1.03115 1.29138 1.19936 0.93294 0.88291 0.97026 0.92607 1.23842 0.98077 0.98230 1.01107 1.23125 0.99271 0.95853 0.98366 1.21068 0.96782 0.97288 1.00036 1.21807 1.02317 0.95668 0.94337 1.22181 0.97691 0.99200 0.96253 1.21441 0.98359 0.93470 1.01825 1.20424 1.01215 0.95844 0.95885 0.91942 0.94324 0.91763 0.94327 0.93308 0.93215 0.85510 0.86911 0.85914 0.91964 0.91920 0.91187 0.90787 0.90364 0.91967 0.93052 0.90626 0.92440 0.93222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.10 9.76 71.98 0.70 -4.40 16 2 C -0.12 -5.75 5.20 30.60 0.16 -5.59 16 3 C 0.22 11.07 1.41 44.17 0.06 11.13 16 4 H -0.04 -1.98 6.89 -2.38 -0.02 -2.00 16 5 C -0.59 -33.82 8.51 25.60 0.22 -33.60 16 6 H 0.04 2.29 7.83 -2.91 -0.02 2.27 16 7 C -0.03 -1.82 5.16 84.65 0.44 -1.39 16 8 N -0.94 -57.55 12.96 21.45 0.28 -57.27 16 9 Si 1.11 51.99 29.91 68.60 2.05 54.04 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 13 N -0.68 -29.18 5.88 -483.26 -2.84 -32.02 16 14 C 0.12 4.70 1.71 42.99 0.07 4.78 16 15 H 0.06 2.55 5.13 -2.39 -0.01 2.54 16 16 C -0.19 -6.39 8.16 24.97 0.20 -6.18 16 17 C -0.15 -4.37 8.55 25.06 0.21 -4.15 16 18 C -0.11 -3.35 5.42 29.79 0.16 -3.19 16 19 C -0.10 -2.32 5.60 31.16 0.17 -2.14 16 20 C -0.12 -2.55 5.70 31.55 0.18 -2.37 16 21 C -0.11 -2.96 5.42 30.35 0.16 -2.80 16 22 C -0.10 -3.05 4.53 28.95 0.13 -2.92 16 23 H 0.06 2.01 6.47 -2.39 -0.02 1.99 16 24 H 0.04 1.43 8.14 -2.38 -0.02 1.42 16 25 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.04 2.03 6.36 -2.39 -0.02 2.01 16 27 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.26 15.98 6.13 -92.71 -0.57 15.42 16 29 H 0.33 12.48 6.19 -89.70 -0.55 11.92 16 30 H 0.11 3.51 7.97 -2.91 -0.02 3.48 16 31 H 0.12 3.09 8.06 -2.91 -0.02 3.07 16 32 H 0.06 2.20 3.56 -2.39 -0.01 2.19 16 33 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.06 1.45 6.28 -2.39 -0.02 1.44 16 38 H 0.05 1.48 6.57 -2.39 -0.02 1.47 16 39 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.06 1.67 7.71 -2.39 -0.02 1.65 16 41 H 0.05 1.76 8.00 -2.39 -0.02 1.74 16 Total: -1.00 -64.04 303.48 3.01 -61.03 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: 0.64 Total: 27.04 kcal Atomic # 6 Polarization: -55.71 SS G_CDS: 2.88 Total: -52.83 kcal Atomic # 7 Polarization: -86.72 SS G_CDS: -2.57 Total: -89.29 kcal Atomic # 14 Polarization: 51.99 SS G_CDS: 2.05 Total: 54.04 kcal Total: -64.04 3.01 -61.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575932084.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.192 kcal (2) G-P(sol) polarization free energy of solvation -64.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds