Wall clock time and date at job start Sun Mar 29 2020 22:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47013 * 2 1 4 4 H 1.08995 * 109.46890 * 184.82950 * 3 2 1 5 5 C 1.50700 * 109.47097 * 304.83298 * 3 2 1 6 6 H 1.07994 * 120.00177 * 119.99900 * 5 3 2 7 7 C 1.37874 * 119.99787 * 299.99573 * 5 3 2 8 8 N 1.31518 * 120.00161 * 180.02562 * 7 5 3 9 9 Si 1.86807 * 120.00246 * 0.02562 * 7 5 3 10 10 H 1.48495 * 109.46765 * 89.99859 * 9 7 5 11 11 H 1.48498 * 109.47421 * 210.00173 * 9 7 5 12 12 H 1.48506 * 109.47042 * 330.00150 * 9 7 5 13 13 N 1.46896 * 109.46598 * 64.82914 * 3 2 1 14 14 C 1.46902 * 111.00297 * 86.34470 * 13 3 2 15 15 H 1.09010 * 108.73220 * 324.48906 * 14 13 3 16 16 C 1.50518 * 108.77177 * 82.78575 * 14 13 3 17 17 C 1.31659 * 116.92467 * 205.48956 * 16 14 13 18 18 C 1.50797 * 118.08623 * 359.73312 * 17 16 14 19 19 C 1.52721 * 108.95384 * 255.13449 * 18 17 16 20 20 C 1.54921 * 108.56728 * 57.82007 * 19 18 17 21 21 C 1.53853 * 107.75535 * 56.99702 * 20 19 18 22 22 C 1.49505 * 108.77031 * 206.19419 * 14 13 3 23 23 H 1.08999 * 109.47092 * 182.95150 * 1 2 3 24 24 H 1.09003 * 109.47239 * 302.94301 * 1 2 3 25 25 H 1.08999 * 109.47545 * 62.94639 * 1 2 3 26 26 H 1.08998 * 109.46819 * 240.00640 * 2 1 3 27 27 H 1.09000 * 109.47498 * 120.00483 * 2 1 3 28 28 H 0.96991 * 119.99986 * 179.97438 * 8 7 5 29 29 H 1.00901 * 111.00337 * 322.39018 * 13 3 2 30 30 H 1.08002 * 121.53258 * 25.51214 * 16 14 13 31 31 H 1.08001 * 120.95297 * 179.70488 * 17 16 14 32 32 H 1.08993 * 109.56109 * 14.97884 * 18 17 16 33 33 H 1.09000 * 109.55885 * 135.29330 * 18 17 16 34 34 H 1.09002 * 109.61937 * 177.54529 * 19 18 17 35 35 H 1.08995 * 109.62080 * 297.90379 * 19 18 17 36 36 H 1.08999 * 109.80171 * 176.56296 * 20 19 18 37 37 H 1.09002 * 109.80525 * 297.43304 * 20 19 18 38 38 H 1.09004 * 109.26301 * 14.39196 * 21 20 19 39 39 H 1.08999 * 109.26455 * 133.84940 * 21 20 19 40 40 H 1.09000 * 107.83579 * 281.38912 * 22 14 13 41 41 H 1.08994 * 107.84462 * 37.32560 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1265 1.4438 -0.0865 5 6 1.4423 2.1867 -1.1662 6 1 0.8322 3.0609 -0.9936 7 6 1.6744 1.7514 -2.4537 8 7 1.1532 2.4010 -3.4716 9 14 2.7292 0.2388 -2.7524 10 1 1.8679 -0.9708 -2.7637 11 1 3.4196 0.3673 -4.0609 12 1 3.7387 0.1177 -1.6700 13 7 1.6477 2.1005 1.2535 14 6 2.6358 1.8498 2.3112 15 1 3.0280 0.8397 2.1917 16 6 3.7679 2.8300 2.1587 17 6 4.9392 2.4674 2.6384 18 6 5.0481 1.1167 3.3000 19 6 5.1180 1.3098 4.8134 20 6 3.8538 2.0791 5.2714 21 6 2.6241 1.2731 4.8184 22 6 1.9549 1.9474 3.6386 23 1 -0.3633 -1.0263 0.0529 24 1 -0.3634 0.5589 0.8624 25 1 -0.3634 0.4674 -0.9152 26 1 1.8932 -0.5137 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.3168 2.0950 -4.3773 29 1 0.7264 1.8078 1.5426 30 1 3.6258 3.7867 1.6782 31 1 5.7973 3.1185 2.5599 32 1 4.1742 0.5158 3.0489 33 1 5.9507 0.6128 2.9544 34 1 5.1532 0.3376 5.3051 35 1 6.0103 1.8813 5.0686 36 1 3.8530 2.1750 6.3572 37 1 3.8367 3.0678 4.8128 38 1 2.9380 0.2697 4.5305 39 1 1.9151 1.2046 5.6434 40 1 1.8388 3.0046 3.8773 41 1 0.9570 1.5215 3.5342 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575932086.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:40 Heat of formation + Delta-G solvation = 14.860978 kcal Electronic energy + Delta-G solvation = -18033.503567 eV Core-core repulsion = 15527.497214 eV Total energy + Delta-G solvation = -2506.006354 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.23317 -36.36119 -33.28827 -32.89805 -31.66270 -29.54597 -27.04982 -26.06208 -24.14515 -23.17515 -21.49664 -20.55472 -19.46266 -17.56642 -16.54504 -15.85403 -15.11489 -15.06557 -14.39756 -14.08576 -13.75186 -13.56108 -13.14476 -12.93199 -12.67214 -12.44207 -12.02995 -11.56723 -11.33895 -11.22527 -11.05903 -10.89063 -10.73779 -10.65101 -10.50735 -10.35662 -10.22920 -9.83156 -9.81124 -9.34634 -9.05038 -8.52508 -8.48544 -7.33597 -6.00581 -3.95722 2.66886 3.28002 3.38618 3.40169 4.44281 4.69456 4.87368 5.01735 5.09917 5.29303 5.31152 5.35648 5.47466 5.53743 5.71675 5.78497 5.80436 5.91594 5.95658 5.99734 6.03588 6.09898 6.17752 6.18795 6.28892 6.33450 6.33771 6.53045 6.54393 6.61781 6.82543 6.87286 7.03343 7.09224 7.25053 7.27583 7.79120 7.99973 8.41055 8.75412 9.11291 9.63152 11.13022 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.032417 B = 0.007269 C = 0.006868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.533551 B = 3850.951024 C = 4076.187854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.159 4.159 3 C 0.187 3.813 4 H 0.034 0.966 5 C -0.487 4.487 6 H 0.081 0.919 7 C 0.069 3.931 8 N -0.902 5.902 9 Si 0.878 3.122 10 H -0.280 1.280 11 H -0.297 1.297 12 H -0.270 1.270 13 N -0.671 5.671 14 C 0.107 3.893 15 H 0.046 0.954 16 C -0.109 4.109 17 C -0.187 4.187 18 C -0.107 4.107 19 C -0.111 4.111 20 C -0.122 4.122 21 C -0.114 4.114 22 C -0.115 4.115 23 H 0.028 0.972 24 H 0.043 0.957 25 H 0.076 0.924 26 H 0.048 0.952 27 H 0.031 0.969 28 H 0.262 0.738 29 H 0.331 0.669 30 H 0.120 0.880 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.956 -3.688 15.762 16.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.198 4.198 3 C 0.078 3.922 4 H 0.051 0.949 5 C -0.526 4.526 6 H 0.099 0.901 7 C -0.132 4.132 8 N -0.542 5.542 9 Si 0.709 3.291 10 H -0.207 1.207 11 H -0.225 1.225 12 H -0.195 1.195 13 N -0.302 5.302 14 C -0.002 4.002 15 H 0.064 0.936 16 C -0.128 4.128 17 C -0.206 4.206 18 C -0.144 4.144 19 C -0.148 4.148 20 C -0.159 4.159 21 C -0.152 4.152 22 C -0.153 4.153 23 H 0.048 0.952 24 H 0.062 0.938 25 H 0.095 0.905 26 H 0.066 0.934 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.151 0.849 30 H 0.138 0.862 31 H 0.123 0.877 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.179 -3.069 15.384 16.520 hybrid contribution 0.444 -1.820 -0.254 1.891 sum 5.622 -4.890 15.130 16.865 Atomic orbital electron populations 1.21600 0.95803 0.98760 1.02962 1.22502 0.97211 1.01256 0.98792 1.19697 0.95923 0.87962 0.88614 0.94853 1.20914 1.30973 1.12618 0.88050 0.90090 1.24886 0.95572 0.96570 0.96195 1.69881 1.45295 1.40316 0.98679 0.87000 0.81242 0.83993 0.76848 1.20721 1.22488 1.19511 1.60751 1.03555 1.62974 1.02947 1.19977 0.92753 0.96331 0.91185 0.93632 1.23118 0.93535 0.99456 0.96669 1.22832 0.97551 0.97849 1.02350 1.20977 1.02539 0.96137 0.94724 1.21828 0.97813 0.99700 0.95469 1.22200 0.94307 0.99791 0.99605 1.21459 0.97130 0.99424 0.97230 1.20709 0.98913 1.01818 0.93881 0.95241 0.93781 0.90530 0.93374 0.95063 0.92809 0.84916 0.86237 0.87676 0.90095 0.92331 0.92403 0.92395 0.92644 0.91014 0.92053 0.92220 0.91803 0.92518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.39 37.16 0.35 -2.33 16 2 C -0.16 -3.41 5.21 -26.73 -0.14 -3.55 16 3 C 0.19 4.37 1.69 -68.86 -0.12 4.26 16 4 H 0.03 0.84 6.58 -51.93 -0.34 0.50 16 5 C -0.49 -13.51 7.99 -34.44 -0.28 -13.78 16 6 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 7 C 0.07 1.97 5.42 -17.82 -0.10 1.87 16 8 N -0.90 -27.60 13.96 55.43 0.77 -26.82 16 9 Si 0.88 22.13 24.32 -169.99 -4.13 17.99 16 10 H -0.28 -6.89 6.91 56.52 0.39 -6.49 16 11 H -0.30 -7.55 7.11 56.52 0.40 -7.14 16 12 H -0.27 -6.60 6.53 56.52 0.37 -6.23 16 13 N -0.67 -13.46 6.00 -104.10 -0.62 -14.09 16 14 C 0.11 1.79 1.76 -70.68 -0.12 1.67 16 15 H 0.05 0.81 4.60 -51.92 -0.24 0.57 16 16 C -0.11 -1.82 8.33 -36.27 -0.30 -2.13 16 17 C -0.19 -2.73 8.55 -36.13 -0.31 -3.04 16 18 C -0.11 -1.39 5.42 -27.98 -0.15 -1.55 16 19 C -0.11 -1.20 5.60 -25.86 -0.14 -1.34 16 20 C -0.12 -1.33 5.70 -25.27 -0.14 -1.47 16 21 C -0.11 -1.31 5.43 -27.06 -0.15 -1.46 16 22 C -0.12 -1.59 4.48 -29.23 -0.13 -1.72 16 23 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.04 0.79 6.32 -51.93 -0.33 0.47 16 25 H 0.08 1.75 7.17 -51.93 -0.37 1.38 16 26 H 0.05 1.11 3.41 -51.93 -0.18 0.93 16 27 H 0.03 0.60 7.45 -51.93 -0.39 0.21 16 28 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.33 6.28 5.60 -39.29 -0.22 6.06 16 30 H 0.12 2.15 8.06 -52.49 -0.42 1.72 16 31 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 32 H 0.08 1.15 3.56 -51.93 -0.18 0.96 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.87 6.28 -51.93 -0.33 0.54 16 38 H 0.06 0.71 6.57 -51.93 -0.34 0.37 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.89 7.71 -51.93 -0.40 0.49 16 41 H 0.06 0.77 7.37 -51.93 -0.38 0.38 16 LS Contribution 293.75 15.07 4.43 4.43 Total: -1.00 -29.10 293.75 -7.97 -37.07 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -6.68 Total: 5.99 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: -1.73 Total: -24.57 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: 0.15 Total: -40.91 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.13 Total: 17.99 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.10 -7.97 -37.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575932086.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.933 kcal (2) G-P(sol) polarization free energy of solvation -29.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds