Wall clock time and date at job start Sun Mar 29 2020 22:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47013 * 2 1 4 4 H 1.08995 * 109.46890 * 184.82950 * 3 2 1 5 5 C 1.50700 * 109.47097 * 304.83298 * 3 2 1 6 6 H 1.07994 * 120.00177 * 119.99900 * 5 3 2 7 7 C 1.37874 * 119.99787 * 299.99573 * 5 3 2 8 8 N 1.31518 * 120.00161 * 180.02562 * 7 5 3 9 9 Si 1.86807 * 120.00246 * 0.02562 * 7 5 3 10 10 H 1.48495 * 109.46765 * 89.99859 * 9 7 5 11 11 H 1.48498 * 109.47421 * 210.00173 * 9 7 5 12 12 H 1.48506 * 109.47042 * 330.00150 * 9 7 5 13 13 N 1.46896 * 109.46598 * 64.82914 * 3 2 1 14 14 C 1.46902 * 111.00297 * 86.34470 * 13 3 2 15 15 H 1.09010 * 108.73220 * 324.48906 * 14 13 3 16 16 C 1.50518 * 108.77177 * 82.78575 * 14 13 3 17 17 C 1.31659 * 116.92467 * 205.48956 * 16 14 13 18 18 C 1.50797 * 118.08623 * 359.73312 * 17 16 14 19 19 C 1.52721 * 108.95384 * 255.13449 * 18 17 16 20 20 C 1.54921 * 108.56728 * 57.82007 * 19 18 17 21 21 C 1.53853 * 107.75535 * 56.99702 * 20 19 18 22 22 C 1.49505 * 108.77031 * 206.19419 * 14 13 3 23 23 H 1.08999 * 109.47092 * 182.95150 * 1 2 3 24 24 H 1.09003 * 109.47239 * 302.94301 * 1 2 3 25 25 H 1.08999 * 109.47545 * 62.94639 * 1 2 3 26 26 H 1.08998 * 109.46819 * 240.00640 * 2 1 3 27 27 H 1.09000 * 109.47498 * 120.00483 * 2 1 3 28 28 H 0.96991 * 119.99986 * 179.97438 * 8 7 5 29 29 H 1.00901 * 111.00337 * 322.39018 * 13 3 2 30 30 H 1.08002 * 121.53258 * 25.51214 * 16 14 13 31 31 H 1.08001 * 120.95297 * 179.70488 * 17 16 14 32 32 H 1.08993 * 109.56109 * 14.97884 * 18 17 16 33 33 H 1.09000 * 109.55885 * 135.29330 * 18 17 16 34 34 H 1.09002 * 109.61937 * 177.54529 * 19 18 17 35 35 H 1.08995 * 109.62080 * 297.90379 * 19 18 17 36 36 H 1.08999 * 109.80171 * 176.56296 * 20 19 18 37 37 H 1.09002 * 109.80525 * 297.43304 * 20 19 18 38 38 H 1.09004 * 109.26301 * 14.39196 * 21 20 19 39 39 H 1.08999 * 109.26455 * 133.84940 * 21 20 19 40 40 H 1.09000 * 107.83579 * 281.38912 * 22 14 13 41 41 H 1.08994 * 107.84462 * 37.32560 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1265 1.4438 -0.0865 5 6 1.4423 2.1867 -1.1662 6 1 0.8322 3.0609 -0.9936 7 6 1.6744 1.7514 -2.4537 8 7 1.1532 2.4010 -3.4716 9 14 2.7292 0.2388 -2.7524 10 1 1.8679 -0.9708 -2.7637 11 1 3.4196 0.3673 -4.0609 12 1 3.7387 0.1177 -1.6700 13 7 1.6477 2.1005 1.2535 14 6 2.6358 1.8498 2.3112 15 1 3.0280 0.8397 2.1917 16 6 3.7679 2.8300 2.1587 17 6 4.9392 2.4674 2.6384 18 6 5.0481 1.1167 3.3000 19 6 5.1180 1.3098 4.8134 20 6 3.8538 2.0791 5.2714 21 6 2.6241 1.2731 4.8184 22 6 1.9549 1.9474 3.6386 23 1 -0.3633 -1.0263 0.0529 24 1 -0.3634 0.5589 0.8624 25 1 -0.3634 0.4674 -0.9152 26 1 1.8932 -0.5137 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.3168 2.0950 -4.3773 29 1 0.7264 1.8078 1.5426 30 1 3.6258 3.7867 1.6782 31 1 5.7973 3.1185 2.5599 32 1 4.1742 0.5158 3.0489 33 1 5.9507 0.6128 2.9544 34 1 5.1532 0.3376 5.3051 35 1 6.0103 1.8813 5.0686 36 1 3.8530 2.1750 6.3572 37 1 3.8367 3.0678 4.8128 38 1 2.9380 0.2697 4.5305 39 1 1.9151 1.2046 5.6434 40 1 1.8388 3.0046 3.8773 41 1 0.9570 1.5215 3.5342 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575932086.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:40 Heat of formation + Delta-G solvation = -3.362670 kcal Electronic energy + Delta-G solvation = -18034.293804 eV Core-core repulsion = 15527.497214 eV Total energy + Delta-G solvation = -2506.796590 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.45801 -37.91416 -34.83160 -33.96763 -33.58589 -30.96127 -28.76652 -27.27808 -25.49506 -24.94349 -22.62635 -21.70572 -21.09674 -18.80652 -18.45149 -17.36161 -16.98780 -16.15091 -15.64833 -15.48742 -15.11567 -14.86304 -14.72615 -14.44290 -14.24492 -14.04887 -13.23969 -12.97273 -12.73319 -12.59711 -12.43145 -12.37132 -12.33746 -12.07125 -11.90459 -11.67741 -11.39600 -11.27282 -11.21916 -11.12070 -10.84835 -10.67603 -9.72183 -8.93143 -8.24153 -6.22902 1.26992 1.32731 1.41397 1.43997 2.32627 3.10804 3.41646 3.83690 4.02730 4.14579 4.21074 4.24150 4.27438 4.30682 4.36061 4.48395 4.51654 4.58127 4.75384 4.83886 4.90027 4.97101 5.02131 5.10554 5.12427 5.13683 5.19159 5.27025 5.31422 5.35893 5.40241 5.47837 5.55910 5.61598 5.74380 5.85507 5.94210 6.19368 6.76054 6.81336 6.86032 7.40532 8.93445 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.032417 B = 0.007269 C = 0.006868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.533551 B = 3850.951024 C = 4076.187854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.157 4.157 3 C 0.197 3.803 4 H 0.018 0.982 5 C -0.483 4.483 6 H 0.035 0.965 7 C 0.014 3.986 8 N -0.951 5.951 9 Si 0.939 3.061 10 H -0.266 1.266 11 H -0.301 1.301 12 H -0.256 1.256 13 N -0.684 5.684 14 C 0.115 3.885 15 H 0.045 0.955 16 C -0.146 4.146 17 C -0.165 4.165 18 C -0.109 4.109 19 C -0.105 4.105 20 C -0.122 4.122 21 C -0.110 4.110 22 C -0.111 4.111 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.039 0.961 26 H 0.036 0.964 27 H 0.061 0.939 28 H 0.263 0.737 29 H 0.336 0.664 30 H 0.095 0.905 31 H 0.116 0.884 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.056 0.944 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.189 -5.937 18.319 20.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.196 4.196 3 C 0.087 3.913 4 H 0.036 0.964 5 C -0.522 4.522 6 H 0.054 0.946 7 C -0.182 4.182 8 N -0.593 5.593 9 Si 0.767 3.233 10 H -0.192 1.192 11 H -0.228 1.228 12 H -0.180 1.180 13 N -0.317 5.317 14 C 0.006 3.994 15 H 0.063 0.937 16 C -0.164 4.164 17 C -0.183 4.183 18 C -0.146 4.146 19 C -0.143 4.143 20 C -0.159 4.159 21 C -0.148 4.148 22 C -0.149 4.149 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.157 0.843 30 H 0.113 0.887 31 H 0.134 0.866 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.075 0.925 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.411 -5.321 17.977 19.814 hybrid contribution 0.062 -0.999 -0.990 1.408 sum 6.473 -6.321 16.987 19.246 Atomic orbital electron populations 1.21532 0.94829 1.00512 1.01795 1.22418 0.98105 0.99457 0.99583 1.19382 0.94445 0.89044 0.88468 0.96383 1.21130 1.29700 1.11334 0.90025 0.94648 1.25643 0.96995 0.99686 0.95915 1.70035 1.47518 1.42548 0.99207 0.86003 0.79906 0.80663 0.76715 1.19177 1.22847 1.18034 1.60591 1.04765 1.63171 1.03129 1.20003 0.91853 0.96082 0.91421 0.93741 1.22986 0.94858 0.99225 0.99369 1.23100 0.96791 0.98546 0.99903 1.21042 1.02550 0.94653 0.96373 1.21812 0.98105 1.00805 0.93544 1.22198 0.94150 0.98849 1.00706 1.21444 0.97637 0.99190 0.96494 1.20680 0.99031 1.01853 0.93324 0.92286 0.92196 0.94205 0.94588 0.91999 0.92825 0.84324 0.88680 0.86579 0.90981 0.91392 0.90666 0.91469 0.90734 0.92580 0.91701 0.90412 0.92500 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.96 9.39 71.98 0.68 -4.29 16 2 C -0.16 -6.43 5.21 30.60 0.16 -6.27 16 3 C 0.20 9.16 1.69 44.17 0.07 9.23 16 4 H 0.02 0.91 6.58 -2.39 -0.02 0.89 16 5 C -0.48 -27.72 7.99 25.60 0.20 -27.51 16 6 H 0.04 2.30 8.06 -2.91 -0.02 2.27 16 7 C 0.01 0.82 5.42 84.65 0.46 1.28 16 8 N -0.95 -60.33 13.96 21.45 0.30 -60.04 16 9 Si 0.94 45.85 24.32 68.60 1.67 47.52 16 10 H -0.27 -12.29 6.91 99.48 0.69 -11.60 16 11 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 12 H -0.26 -11.80 6.53 99.48 0.65 -11.15 16 13 N -0.68 -27.50 6.00 -483.26 -2.90 -30.40 16 14 C 0.12 3.74 1.76 42.99 0.08 3.82 16 15 H 0.05 1.48 4.60 -2.38 -0.01 1.47 16 16 C -0.15 -4.85 8.33 24.97 0.21 -4.64 16 17 C -0.16 -4.55 8.55 25.06 0.21 -4.34 16 18 C -0.11 -2.53 5.42 29.79 0.16 -2.37 16 19 C -0.11 -1.89 5.60 31.16 0.17 -1.71 16 20 C -0.12 -2.27 5.70 31.54 0.18 -2.09 16 21 C -0.11 -2.16 5.43 30.38 0.16 -2.00 16 22 C -0.11 -2.86 4.48 28.98 0.13 -2.73 16 23 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.06 2.07 6.32 -2.39 -0.02 2.05 16 25 H 0.04 1.81 7.17 -2.39 -0.02 1.79 16 26 H 0.04 1.57 3.41 -2.39 -0.01 1.56 16 27 H 0.06 2.17 7.45 -2.39 -0.02 2.16 16 28 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 29 H 0.34 12.59 5.60 -89.69 -0.50 12.08 16 30 H 0.10 3.58 8.06 -2.91 -0.02 3.56 16 31 H 0.12 2.91 8.06 -2.91 -0.02 2.88 16 32 H 0.07 1.83 3.56 -2.39 -0.01 1.82 16 33 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.06 1.24 6.28 -2.39 -0.01 1.22 16 38 H 0.06 1.26 6.57 -2.38 -0.02 1.24 16 39 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.06 1.53 7.71 -2.39 -0.02 1.51 16 41 H 0.06 1.49 7.37 -2.39 -0.02 1.47 16 Total: -1.00 -64.85 293.75 2.38 -62.47 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 0.42 Total: 24.04 kcal Atomic # 6 Polarization: -46.48 SS G_CDS: 2.88 Total: -43.60 kcal Atomic # 7 Polarization: -87.83 SS G_CDS: -2.60 Total: -90.43 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.67 Total: 47.52 kcal Total: -64.85 2.38 -62.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575932086.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.108 kcal (2) G-P(sol) polarization free energy of solvation -64.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds