Wall clock time and date at job start Sun Mar 29 2020 22:10:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50708 * 1
3 3 C 1.29443 * 117.96397 * 2 1
4 4 C 1.50059 * 124.07407 * 179.52968 * 3 2 1
5 5 C 1.53024 * 110.15077 * 17.13228 * 4 3 2
6 6 H 1.09004 * 109.63934 * 70.46096 * 5 4 3
7 7 N 1.46902 * 109.64156 * 190.87625 * 5 4 3
8 8 C 1.46897 * 111.00178 * 274.99962 * 7 5 4
9 9 C 1.52994 * 109.47278 * 180.02562 * 8 7 5
10 10 C 1.53005 * 109.47323 * 59.99860 * 9 8 7
11 11 C 1.52999 * 109.47102 * 299.99927 * 9 8 7
12 12 C 1.50699 * 109.47350 * 180.02562 * 9 8 7
13 13 H 1.08000 * 120.00135 * 4.81113 * 12 9 8
14 14 C 1.37883 * 120.00006 * 184.81589 * 12 9 8
15 15 N 1.31515 * 120.00055 * 351.78254 * 14 12 9
16 16 Si 1.86799 * 119.99974 * 171.77744 * 14 12 9
17 17 H 1.48503 * 109.47143 * 0.02562 * 16 14 12
18 18 H 1.48495 * 109.47193 * 119.99826 * 16 14 12
19 19 H 1.48494 * 109.47322 * 240.00419 * 16 14 12
20 20 C 1.53391 * 108.43754 * 310.56195 * 5 4 3
21 21 C 1.50073 * 117.96073 * 179.97438 * 2 1 3
22 22 H 1.09001 * 109.46489 * 359.97438 * 1 2 3
23 23 H 1.08997 * 109.46674 * 119.99582 * 1 2 3
24 24 H 1.08999 * 109.47053 * 240.00071 * 1 2 3
25 25 H 1.07996 * 117.96007 * 359.51072 * 3 2 1
26 26 H 1.09003 * 109.36043 * 256.92216 * 4 3 2
27 27 H 1.09004 * 109.35702 * 137.33881 * 4 3 2
28 28 H 1.00908 * 110.99492 * 151.04669 * 7 5 4
29 29 H 1.09001 * 109.46946 * 59.99907 * 8 7 5
30 30 H 1.09002 * 109.47043 * 300.00119 * 8 7 5
31 31 H 1.08998 * 109.47222 * 172.71701 * 10 9 8
32 32 H 1.09001 * 109.46959 * 292.72026 * 10 9 8
33 33 H 1.09004 * 109.46828 * 52.71516 * 10 9 8
34 34 H 1.09000 * 109.47259 * 307.36785 * 11 9 8
35 35 H 1.09006 * 109.47257 * 67.36572 * 11 9 8
36 36 H 1.08997 * 109.47221 * 187.36681 * 11 9 8
37 37 H 0.96997 * 119.99980 * 5.68819 * 15 14 12
38 38 H 1.08997 * 109.64309 * 187.11913 * 20 5 4
39 39 H 1.09000 * 109.64194 * 307.75454 * 20 5 4
40 40 H 1.08999 * 109.35466 * 317.33938 * 21 2 1
41 41 H 1.09003 * 109.35887 * 76.92428 * 21 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.1141 1.1433 0.0000
4 6 3.6061 1.3030 0.0102
5 6 4.2794 -0.0075 -0.4031
6 1 4.1088 -0.1883 -1.4644
7 7 5.7227 0.0752 -0.1421
8 6 6.4247 0.7141 -1.2632
9 6 7.9219 0.7815 -0.9556
10 6 8.4654 -0.6345 -0.7541
11 6 8.1446 1.5993 0.3181
12 6 8.6419 1.4376 -2.1055
13 1 8.0799 1.8428 -2.9340
14 6 10.0182 1.5205 -2.0998
15 7 10.6934 1.1760 -1.0250
16 14 10.9239 2.1220 -3.6188
17 1 9.9421 2.4450 -4.6851
18 1 11.7045 3.3390 -3.2802
19 1 11.8450 1.0606 -4.0986
20 6 3.6704 -1.1474 0.4232
21 6 2.2107 -1.3256 0.0006
22 1 -0.3632 1.0277 0.0005
23 1 -0.3632 -0.5138 -0.8900
24 1 -0.3633 -0.5138 0.8900
25 1 1.5090 2.0378 -0.0081
26 1 3.9334 1.5767 1.0133
27 1 3.8899 2.0908 -0.6877
28 1 6.1077 -0.8370 0.0529
29 1 6.0371 1.7228 -1.4070
30 1 6.2664 0.1313 -2.1706
31 1 9.5510 -0.5975 -0.6637
32 1 8.0394 -1.0614 0.1539
33 1 8.1928 -1.2534 -1.6091
34 1 7.6435 2.5627 0.2237
35 1 7.7360 1.0595 1.1725
36 1 9.2127 1.7583 0.4657
37 1 10.2315 0.7863 -0.2663
38 1 4.2210 -2.0695 0.2371
39 1 3.7167 -0.8969 1.4830
40 1 1.7121 -1.9989 0.6978
41 1 2.1746 -1.7542 -1.0009
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000578962942.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:10:45
Heat of formation + Delta-G solvation = -3.933059 kcal
Electronic energy + Delta-G solvation = -17421.488802 eV
Core-core repulsion = 14914.667477 eV
Total energy + Delta-G solvation = -2506.821324 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 237.179 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-39.01156 -36.88634 -34.34525 -31.59493 -30.70359 -29.49788 -26.02498 -25.84633
-25.21108 -23.67972 -22.65098 -20.86602 -18.59953 -17.57482 -16.79494 -15.60234
-14.87751 -14.49026 -14.04376 -13.71939 -13.61308 -13.24045 -13.14702 -13.05015
-12.44978 -12.32096 -12.03289 -12.00193 -11.67186 -11.31091 -11.10372 -10.93973
-10.58696 -10.52115 -10.41384 -10.33335 -10.18453 -10.05659 -9.61005 -9.25670
-8.69445 -8.38329 -8.07341 -7.76481 -6.14201 -3.97504 2.26639 3.47136
3.49990 3.63672 4.51105 4.62414 4.67842 4.85400 5.11465 5.25423
5.34104 5.43956 5.44428 5.53616 5.65734 5.67820 5.78157 5.82672
5.85293 6.06724 6.13385 6.19831 6.25587 6.27666 6.44770 6.52687
6.69662 6.71767 6.84927 6.96426 7.04907 7.14589 7.24602 7.30570
7.69276 7.71642 7.83732 8.02723 8.40648 8.53584 8.97894 9.73412
11.11713
Molecular weight = 237.18amu
Principal moments of inertia in cm(-1)
A = 0.047612 B = 0.004921 C = 0.004777
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 587.942991 B = 5688.484604 C = 5859.921603
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.118 4.118
2 C -0.141 4.141
3 C -0.146 4.146
4 C -0.079 4.079
5 C 0.087 3.913
6 H 0.038 0.962
7 N -0.685 5.685
8 C 0.084 3.916
9 C 0.052 3.948
10 C -0.147 4.147
11 C -0.129 4.129
12 C -0.587 4.587
13 H 0.046 0.954
14 C 0.024 3.976
15 N -0.921 5.921
16 Si 1.067 2.933
17 H -0.291 1.291
18 H -0.289 1.289
19 H -0.288 1.288
20 C -0.119 4.119
21 C -0.077 4.077
22 H 0.057 0.943
23 H 0.060 0.940
24 H 0.060 0.940
25 H 0.100 0.900
26 H 0.081 0.919
27 H 0.068 0.932
28 H 0.336 0.664
29 H 0.057 0.943
30 H 0.014 0.986
31 H 0.070 0.930
32 H 0.021 0.979
33 H 0.028 0.972
34 H 0.028 0.972
35 H 0.026 0.974
36 H 0.058 0.942
37 H 0.283 0.717
38 H 0.062 0.938
39 H 0.070 0.930
40 H 0.068 0.932
41 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.163 -3.909 2.471 16.811
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.175 4.175
2 C -0.141 4.141
3 C -0.165 4.165
4 C -0.116 4.116
5 C -0.023 4.023
6 H 0.056 0.944
7 N -0.317 5.317
8 C -0.044 4.044
9 C 0.052 3.948
10 C -0.205 4.205
11 C -0.187 4.187
12 C -0.626 4.626
13 H 0.065 0.935
14 C -0.180 4.180
15 N -0.562 5.562
16 Si 0.897 3.103
17 H -0.217 1.217
18 H -0.215 1.215
19 H -0.215 1.215
20 C -0.157 4.157
21 C -0.115 4.115
22 H 0.076 0.924
23 H 0.079 0.921
24 H 0.079 0.921
25 H 0.118 0.882
26 H 0.100 0.900
27 H 0.086 0.914
28 H 0.156 0.844
29 H 0.075 0.925
30 H 0.032 0.968
31 H 0.088 0.912
32 H 0.040 0.960
33 H 0.047 0.953
34 H 0.047 0.953
35 H 0.045 0.955
36 H 0.077 0.923
37 H 0.099 0.901
38 H 0.081 0.919
39 H 0.089 0.911
40 H 0.087 0.913
41 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -14.710 -2.946 2.254 15.170
hybrid contribution -1.641 -0.999 -0.217 1.934
sum -16.351 -3.945 2.037 16.943
Atomic orbital electron populations
1.20925 0.92903 1.01995 1.01629 1.20829 0.95401 0.95091 1.02748
1.22065 0.96558 0.96861 1.00979 1.20429 0.90829 0.97825 1.02567
1.21508 0.89280 0.94500 0.97042 0.94368 1.60610 1.00996 1.26966
1.43080 1.22056 0.95932 0.97242 0.89185 1.18278 0.89570 0.92268
0.94714 1.22040 1.03233 0.98044 0.97169 1.21860 1.01196 0.98521
0.97097 1.21910 0.93762 1.41327 1.05559 0.93536 1.25605 0.94839
0.95854 1.01686 1.70777 1.40775 1.39679 1.04951 0.83580 0.75348
0.76527 0.74876 1.21743 1.21511 1.21500 1.21766 0.94924 0.98154
1.00826 1.20313 0.94991 0.94727 1.01458 0.92355 0.92099 0.92076
0.88176 0.90038 0.91372 0.84435 0.92483 0.96798 0.91174 0.95981
0.95293 0.95296 0.95538 0.92336 0.90059 0.91890 0.91079 0.91313
0.91315
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.07 9.98 36.01 0.36 -0.71 16
2 C -0.14 -1.61 5.84 -100.93 -0.59 -2.20 16
3 C -0.15 -1.82 9.40 -35.90 -0.34 -2.16 16
4 C -0.08 -1.14 5.56 -28.18 -0.16 -1.30 16
5 C 0.09 1.32 2.54 -67.50 -0.17 1.15 16
6 H 0.04 0.62 7.80 -51.93 -0.41 0.22 16
7 N -0.68 -12.23 5.67 -106.50 -0.60 -12.83 16
8 C 0.08 1.79 4.38 -3.83 -0.02 1.77 16
9 C 0.05 1.28 0.57 -155.66 -0.09 1.19 16
10 C -0.15 -3.44 7.59 37.16 0.28 -3.16 16
11 C -0.13 -3.12 7.93 37.16 0.29 -2.83 16
12 C -0.59 -16.25 8.00 -34.44 -0.28 -16.53 16
13 H 0.05 1.31 7.76 -52.49 -0.41 0.90 16
14 C 0.02 0.67 5.07 -17.82 -0.09 0.58 16
15 N -0.92 -27.06 12.16 55.43 0.67 -26.39 16
16 Si 1.07 25.28 29.91 -169.99 -5.08 20.20 16
17 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16
18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16
19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16
20 C -0.12 -1.50 5.37 -26.53 -0.14 -1.64 16
21 C -0.08 -0.85 5.82 -28.18 -0.16 -1.02 16
22 H 0.06 0.49 7.56 -51.93 -0.39 0.10 16
23 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
25 H 0.10 1.12 7.56 -52.49 -0.40 0.73 16
26 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16
27 H 0.07 1.05 7.77 -51.93 -0.40 0.64 16
28 H 0.34 5.89 6.50 -39.29 -0.26 5.64 16
29 H 0.06 1.25 7.68 -51.93 -0.40 0.85 16
30 H 0.01 0.30 8.06 -51.93 -0.42 -0.12 16
31 H 0.07 1.82 5.17 -51.93 -0.27 1.55 16
32 H 0.02 0.45 6.92 -51.93 -0.36 0.09 16
33 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16
34 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16
35 H 0.03 0.58 7.81 -51.93 -0.41 0.18 16
36 H 0.06 1.55 5.30 -51.93 -0.28 1.27 16
37 H 0.28 8.12 3.59 -40.82 -0.15 7.98 16
38 H 0.06 0.76 8.00 -51.93 -0.42 0.34 16
39 H 0.07 0.92 8.12 -51.93 -0.42 0.49 16
40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16
41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16
LS Contribution 309.70 15.07 4.67 4.67
Total: -1.00 -28.64 309.70 -8.57 -37.21
By element:
Atomic # 1 Polarization: 11.11 SS G_CDS: -7.12 Total: 3.98 kcal
Atomic # 6 Polarization: -25.74 SS G_CDS: -1.10 Total: -26.84 kcal
Atomic # 7 Polarization: -39.29 SS G_CDS: 0.07 Total: -39.22 kcal
Atomic # 14 Polarization: 25.28 SS G_CDS: -5.08 Total: 20.20 kcal
Total LS contribution 4.67 Total: 4.67 kcal
Total: -28.64 -8.57 -37.21 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000578962942.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 33.276 kcal
(2) G-P(sol) polarization free energy of solvation -28.642 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.635 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.209 kcal
(6) G-S(sol) free energy of system = (1) + (5) -3.933 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds