Wall clock time and date at job start Sun Mar 29 2020 22:10:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50708 * 1
3 3 C 1.29443 * 117.96397 * 2 1
4 4 C 1.50059 * 124.07407 * 179.52968 * 3 2 1
5 5 C 1.53024 * 110.15077 * 17.13228 * 4 3 2
6 6 H 1.09004 * 109.63934 * 70.46096 * 5 4 3
7 7 N 1.46902 * 109.64156 * 190.87625 * 5 4 3
8 8 C 1.46897 * 111.00178 * 274.99962 * 7 5 4
9 9 C 1.52994 * 109.47278 * 180.02562 * 8 7 5
10 10 C 1.53005 * 109.47323 * 59.99860 * 9 8 7
11 11 C 1.52999 * 109.47102 * 299.99927 * 9 8 7
12 12 C 1.50699 * 109.47350 * 180.02562 * 9 8 7
13 13 H 1.08000 * 120.00135 * 4.81113 * 12 9 8
14 14 C 1.37883 * 120.00006 * 184.81589 * 12 9 8
15 15 N 1.31515 * 120.00055 * 351.78254 * 14 12 9
16 16 Si 1.86799 * 119.99974 * 171.77744 * 14 12 9
17 17 H 1.48503 * 109.47143 * 0.02562 * 16 14 12
18 18 H 1.48495 * 109.47193 * 119.99826 * 16 14 12
19 19 H 1.48494 * 109.47322 * 240.00419 * 16 14 12
20 20 C 1.53391 * 108.43754 * 310.56195 * 5 4 3
21 21 C 1.50073 * 117.96073 * 179.97438 * 2 1 3
22 22 H 1.09001 * 109.46489 * 359.97438 * 1 2 3
23 23 H 1.08997 * 109.46674 * 119.99582 * 1 2 3
24 24 H 1.08999 * 109.47053 * 240.00071 * 1 2 3
25 25 H 1.07996 * 117.96007 * 359.51072 * 3 2 1
26 26 H 1.09003 * 109.36043 * 256.92216 * 4 3 2
27 27 H 1.09004 * 109.35702 * 137.33881 * 4 3 2
28 28 H 1.00908 * 110.99492 * 151.04669 * 7 5 4
29 29 H 1.09001 * 109.46946 * 59.99907 * 8 7 5
30 30 H 1.09002 * 109.47043 * 300.00119 * 8 7 5
31 31 H 1.08998 * 109.47222 * 172.71701 * 10 9 8
32 32 H 1.09001 * 109.46959 * 292.72026 * 10 9 8
33 33 H 1.09004 * 109.46828 * 52.71516 * 10 9 8
34 34 H 1.09000 * 109.47259 * 307.36785 * 11 9 8
35 35 H 1.09006 * 109.47257 * 67.36572 * 11 9 8
36 36 H 1.08997 * 109.47221 * 187.36681 * 11 9 8
37 37 H 0.96997 * 119.99980 * 5.68819 * 15 14 12
38 38 H 1.08997 * 109.64309 * 187.11913 * 20 5 4
39 39 H 1.09000 * 109.64194 * 307.75454 * 20 5 4
40 40 H 1.08999 * 109.35466 * 317.33938 * 21 2 1
41 41 H 1.09003 * 109.35887 * 76.92428 * 21 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.1141 1.1433 0.0000
4 6 3.6061 1.3030 0.0102
5 6 4.2794 -0.0075 -0.4031
6 1 4.1088 -0.1883 -1.4644
7 7 5.7227 0.0752 -0.1421
8 6 6.4247 0.7141 -1.2632
9 6 7.9219 0.7815 -0.9556
10 6 8.4654 -0.6345 -0.7541
11 6 8.1446 1.5993 0.3181
12 6 8.6419 1.4376 -2.1055
13 1 8.0799 1.8428 -2.9340
14 6 10.0182 1.5205 -2.0998
15 7 10.6934 1.1760 -1.0250
16 14 10.9239 2.1220 -3.6188
17 1 9.9421 2.4450 -4.6851
18 1 11.7045 3.3390 -3.2802
19 1 11.8450 1.0606 -4.0986
20 6 3.6704 -1.1474 0.4232
21 6 2.2107 -1.3256 0.0006
22 1 -0.3632 1.0277 0.0005
23 1 -0.3632 -0.5138 -0.8900
24 1 -0.3633 -0.5138 0.8900
25 1 1.5090 2.0378 -0.0081
26 1 3.9334 1.5767 1.0133
27 1 3.8899 2.0908 -0.6877
28 1 6.1077 -0.8370 0.0529
29 1 6.0371 1.7228 -1.4070
30 1 6.2664 0.1313 -2.1706
31 1 9.5510 -0.5975 -0.6637
32 1 8.0394 -1.0614 0.1539
33 1 8.1928 -1.2534 -1.6091
34 1 7.6435 2.5627 0.2237
35 1 7.7360 1.0595 1.1725
36 1 9.2127 1.7583 0.4657
37 1 10.2315 0.7863 -0.2663
38 1 4.2210 -2.0695 0.2371
39 1 3.7167 -0.8969 1.4830
40 1 1.7121 -1.9989 0.6978
41 1 2.1746 -1.7542 -1.0009
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000578962942.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:10:45
Heat of formation + Delta-G solvation = -19.031663 kcal
Electronic energy + Delta-G solvation = -17422.143526 eV
Core-core repulsion = 14914.667477 eV
Total energy + Delta-G solvation = -2507.476049 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 237.179 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-40.17365 -38.60389 -35.80286 -33.19066 -31.75973 -30.96369 -27.81210 -27.59195
-26.79093 -25.10483 -23.89001 -22.04638 -20.55814 -18.91531 -18.42606 -16.92984
-16.20152 -15.73495 -15.63384 -15.33448 -14.87196 -14.64843 -14.59030 -14.12773
-13.89606 -13.73861 -13.30322 -13.27153 -13.02484 -12.95239 -12.56714 -12.48158
-12.46156 -12.37345 -11.93187 -11.87323 -11.59223 -11.46727 -11.28023 -11.07478
-10.44871 -10.17151 -9.62317 -9.27474 -8.34597 -6.19715 1.34981 1.54583
1.62225 1.78418 2.60728 3.26023 3.29075 3.71312 3.85472 4.07970
4.24160 4.34211 4.38788 4.43993 4.49760 4.61611 4.64417 4.72993
4.77204 4.81091 4.88237 4.93886 4.97749 4.99313 5.05358 5.09952
5.12985 5.18449 5.23112 5.27511 5.30389 5.36620 5.72160 5.79093
5.90235 6.11355 6.14852 6.26108 6.42429 6.56212 6.82299 7.57954
8.92105
Molecular weight = 237.18amu
Principal moments of inertia in cm(-1)
A = 0.047612 B = 0.004921 C = 0.004777
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 587.942991 B = 5688.484604 C = 5859.921603
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.117 4.117
2 C -0.133 4.133
3 C -0.168 4.168
4 C -0.075 4.075
5 C 0.085 3.915
6 H 0.029 0.971
7 N -0.683 5.683
8 C 0.101 3.899
9 C 0.041 3.959
10 C -0.135 4.135
11 C -0.115 4.115
12 C -0.603 4.603
13 H 0.034 0.966
14 C -0.021 4.021
15 N -0.943 5.943
16 Si 1.109 2.891
17 H -0.279 1.279
18 H -0.284 1.284
19 H -0.281 1.281
20 C -0.113 4.113
21 C -0.078 4.078
22 H 0.062 0.938
23 H 0.071 0.929
24 H 0.074 0.926
25 H 0.110 0.890
26 H 0.071 0.929
27 H 0.050 0.950
28 H 0.340 0.660
29 H 0.044 0.956
30 H 0.005 0.995
31 H 0.043 0.957
32 H 0.047 0.953
33 H 0.029 0.971
34 H 0.020 0.980
35 H 0.043 0.957
36 H 0.033 0.967
37 H 0.279 0.721
38 H 0.070 0.930
39 H 0.069 0.931
40 H 0.091 0.909
41 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.871 -4.882 2.540 18.699
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C -0.133 4.133
3 C -0.186 4.186
4 C -0.112 4.112
5 C -0.024 4.024
6 H 0.047 0.953
7 N -0.315 5.315
8 C -0.028 4.028
9 C 0.040 3.960
10 C -0.193 4.193
11 C -0.173 4.173
12 C -0.641 4.641
13 H 0.052 0.948
14 C -0.220 4.220
15 N -0.584 5.584
16 Si 0.933 3.067
17 H -0.205 1.205
18 H -0.210 1.210
19 H -0.207 1.207
20 C -0.151 4.151
21 C -0.116 4.116
22 H 0.081 0.919
23 H 0.089 0.911
24 H 0.093 0.907
25 H 0.128 0.872
26 H 0.089 0.911
27 H 0.068 0.932
28 H 0.160 0.840
29 H 0.062 0.938
30 H 0.023 0.977
31 H 0.062 0.938
32 H 0.066 0.934
33 H 0.048 0.952
34 H 0.039 0.961
35 H 0.062 0.938
36 H 0.052 0.948
37 H 0.094 0.906
38 H 0.089 0.911
39 H 0.088 0.912
40 H 0.109 0.891
41 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges -16.441 -3.926 2.334 17.063
hybrid contribution -1.168 -0.720 -0.207 1.387
sum -17.608 -4.645 2.128 18.335
Atomic orbital electron populations
1.20958 0.90910 1.02760 1.02752 1.21145 0.96936 0.94771 1.00410
1.22006 0.95169 0.98021 1.03442 1.20329 0.92632 0.96886 1.01387
1.21591 0.87562 0.96178 0.97096 0.95332 1.60545 1.02473 1.27075
1.41393 1.21684 0.94271 0.96855 0.89954 1.18354 0.91355 0.92560
0.93689 1.21876 1.01432 0.97530 0.98467 1.21691 0.99386 0.98378
0.97816 1.22240 0.94251 1.41421 1.06235 0.94750 1.26810 0.96053
0.95735 1.03365 1.70851 1.41104 1.40935 1.05546 0.83029 0.74820
0.76440 0.72424 1.20451 1.20981 1.20690 1.21726 0.96102 0.97142
1.00131 1.20377 0.93774 0.95014 1.02386 0.91905 0.91071 0.90691
0.87183 0.91089 0.93173 0.84020 0.93768 0.97651 0.93788 0.93370
0.95206 0.96064 0.93755 0.94803 0.90576 0.91088 0.91187 0.89052
0.90722
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.75 9.98 71.24 0.71 -1.04 16
2 C -0.13 -2.69 5.84 -15.09 -0.09 -2.78 16
3 C -0.17 -3.96 9.40 27.03 0.25 -3.70 16
4 C -0.07 -2.14 5.56 29.66 0.16 -1.98 16
5 C 0.09 2.51 2.54 45.05 0.11 2.63 16
6 H 0.03 0.91 7.80 -2.38 -0.02 0.89 16
7 N -0.68 -23.85 5.67 -490.85 -2.78 -26.64 16
8 C 0.10 4.33 4.38 86.30 0.38 4.70 16
9 C 0.04 2.01 0.57 -52.93 -0.03 1.98 16
10 C -0.13 -6.27 7.59 71.98 0.55 -5.73 16
11 C -0.11 -5.59 7.93 71.98 0.57 -5.02 16
12 C -0.60 -33.77 8.00 25.60 0.20 -33.57 16
13 H 0.03 1.96 7.76 -2.91 -0.02 1.93 16
14 C -0.02 -1.16 5.07 84.66 0.43 -0.73 16
15 N -0.94 -56.01 12.16 21.45 0.26 -55.75 16
16 Si 1.11 50.95 29.91 68.60 2.05 53.01 16
17 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16
18 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16
19 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16
20 C -0.11 -2.61 5.37 30.73 0.16 -2.45 16
21 C -0.08 -1.49 5.82 29.65 0.17 -1.31 16
22 H 0.06 0.89 7.56 -2.39 -0.02 0.87 16
23 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16
24 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16
25 H 0.11 2.33 7.56 -2.91 -0.02 2.31 16
26 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16
27 H 0.05 1.58 7.77 -2.38 -0.02 1.56 16
28 H 0.34 11.39 6.50 -89.69 -0.58 10.81 16
29 H 0.04 1.98 7.68 -2.39 -0.02 1.96 16
30 H 0.01 0.23 8.06 -2.39 -0.02 0.21 16
31 H 0.04 2.28 5.17 -2.39 -0.01 2.27 16
32 H 0.05 1.93 6.92 -2.39 -0.02 1.92 16
33 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16
34 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16
35 H 0.04 1.95 7.81 -2.38 -0.02 1.93 16
36 H 0.03 1.80 5.30 -2.39 -0.01 1.79 16
37 H 0.28 16.28 3.59 -92.71 -0.33 15.95 16
38 H 0.07 1.53 8.00 -2.39 -0.02 1.51 16
39 H 0.07 1.65 8.12 -2.39 -0.02 1.63 16
40 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16
41 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16
Total: -1.00 -61.07 309.70 3.95 -57.12
By element:
Atomic # 1 Polarization: 20.43 SS G_CDS: 0.83 Total: 21.27 kcal
Atomic # 6 Polarization: -52.59 SS G_CDS: 3.59 Total: -48.99 kcal
Atomic # 7 Polarization: -79.87 SS G_CDS: -2.52 Total: -82.39 kcal
Atomic # 14 Polarization: 50.95 SS G_CDS: 2.05 Total: 53.01 kcal
Total: -61.07 3.95 -57.12 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000578962942.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 38.084 kcal
(2) G-P(sol) polarization free energy of solvation -61.071 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.986 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.955 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.116 kcal
(6) G-S(sol) free energy of system = (1) + (5) -19.032 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds