Wall clock time and date at job start Sun Mar 29 2020 21:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 119.99860 * 2 1 4 4 H 1.48499 * 109.47066 * 270.00246 * 3 2 1 5 5 H 1.48504 * 109.46874 * 30.00146 * 3 2 1 6 6 H 1.48499 * 109.46929 * 150.00009 * 3 2 1 7 7 C 1.37867 * 119.99949 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99934 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00247 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47326 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.46988 * 179.97438 * 10 9 7 12 12 N 1.46900 * 109.47016 * 180.02562 * 11 10 9 13 13 C 1.47448 * 111.00041 * 69.15688 * 12 11 10 14 14 C 1.54321 * 107.23159 * 123.26094 * 13 12 11 15 15 C 1.55422 * 103.04810 * 22.28093 * 14 13 12 16 16 H 1.08998 * 111.00401 * 82.38939 * 15 14 13 17 17 C 1.53002 * 111.10766 * 206.29505 * 15 14 13 18 18 C 1.53777 * 113.61610 * 271.31317 * 17 15 14 19 19 C 1.53952 * 87.01807 * 220.04411 * 18 17 15 20 20 C 1.53773 * 87.11143 * 25.36246 * 19 18 17 21 21 C 1.47846 * 111.00020 * 189.99819 * 12 11 10 22 22 H 0.97005 * 120.00101 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47333 * 59.99285 * 9 7 2 24 24 H 1.09001 * 109.46990 * 299.99404 * 9 7 2 25 25 H 1.08999 * 109.46844 * 60.00021 * 10 9 7 26 26 H 1.09001 * 109.46944 * 299.99854 * 10 9 7 27 27 H 1.09001 * 109.47391 * 59.99878 * 11 10 9 28 28 H 1.09001 * 109.47271 * 299.99790 * 11 10 9 29 29 H 1.08999 * 109.88737 * 242.66366 * 13 12 11 30 30 H 1.08997 * 109.88833 * 3.69001 * 13 12 11 31 31 H 1.09004 * 110.70290 * 140.66846 * 14 13 12 32 32 H 1.09005 * 110.69934 * 263.71964 * 14 13 12 33 33 H 1.09009 * 112.84559 * 42.50763 * 17 15 14 34 34 H 1.09000 * 113.61328 * 334.56503 * 18 17 15 35 35 H 1.09007 * 113.61441 * 105.46853 * 18 17 15 36 36 H 1.08998 * 113.53810 * 270.80955 * 19 18 17 37 37 H 1.08998 * 113.74299 * 139.94576 * 19 18 17 38 38 H 1.09010 * 113.61623 * 220.09128 * 20 19 18 39 39 H 1.09000 * 113.61577 * 89.19001 * 20 19 18 40 40 H 1.09002 * 110.37464 * 332.46590 * 21 12 11 41 41 H 1.08999 * 110.37318 * 94.69366 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9870 0.0012 12 7 2.4349 -6.1036 0.0018 13 6 3.1505 -6.1863 1.2883 14 6 2.9090 -7.6009 1.8557 15 6 2.5425 -8.4280 0.5919 16 1 3.4389 -8.7472 0.0604 17 6 1.6660 -9.6287 0.9542 18 6 2.4679 -10.8911 1.3120 19 6 1.4093 -11.6881 0.5283 20 6 1.1422 -10.4003 -0.2685 21 6 1.7461 -7.3897 -0.2372 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5570 -0.8896 24 1 0.6241 -2.5567 0.8904 25 1 2.8720 -3.6043 0.8905 26 1 2.8720 -3.6043 -0.8895 27 1 0.8533 -5.0450 -0.8886 28 1 0.8540 -5.0445 0.8914 29 1 4.2172 -6.0274 1.1302 30 1 2.7622 -5.4364 1.9775 31 1 3.8149 -7.9894 2.3210 32 1 2.0838 -7.5947 2.5680 33 1 0.8911 -9.3831 1.6804 34 1 3.4596 -10.9210 0.8605 35 1 2.4807 -11.1123 2.3793 36 1 0.5644 -12.0069 1.1388 37 1 1.8250 -12.4959 -0.0739 38 1 0.0863 -10.2258 -0.4754 39 1 1.7707 -10.2958 -1.1529 40 1 0.7141 -7.3378 0.1100 41 1 1.7768 -7.6456 -1.2963 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591062013.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:32 Heat of formation + Delta-G solvation = -3.901685 kcal Electronic energy + Delta-G solvation = -16739.167314 eV Core-core repulsion = 14232.347350 eV Total energy + Delta-G solvation = -2506.819964 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.79927 -37.82537 -34.19559 -32.36746 -30.17493 -29.08657 -26.49308 -25.71747 -24.44150 -22.89706 -20.88803 -20.56852 -19.62514 -19.41736 -16.33483 -16.10563 -15.72188 -15.30829 -14.48053 -14.30229 -13.69571 -13.47050 -13.26753 -12.66483 -12.57827 -12.51716 -12.14678 -12.06981 -11.74427 -11.35670 -11.08315 -11.03801 -10.80486 -10.65490 -10.60310 -10.48826 -10.42002 -10.20327 -10.10870 -9.59209 -9.26121 -9.00308 -8.30198 -7.96618 -5.95617 -3.97433 3.35072 3.40810 3.44760 4.22363 4.27096 4.45744 4.50170 4.59376 4.64318 4.83092 5.03772 5.14728 5.33906 5.40087 5.43917 5.54030 5.54930 5.55763 5.66747 5.74073 5.74813 5.79733 5.83360 5.88415 5.97463 6.05709 6.13424 6.20373 6.30835 6.39293 6.41299 6.77400 6.85521 7.18176 7.36276 7.50334 7.73778 7.89122 8.05378 8.49157 9.09892 9.66327 11.15909 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.067717 B = 0.003642 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.383370 B = 7687.163063 C = 7896.323816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.103 4.103 11 C 0.052 3.948 12 N -0.532 5.532 13 C 0.041 3.959 14 C -0.136 4.136 15 C -0.086 4.086 16 H 0.082 0.918 17 C -0.100 4.100 18 C -0.136 4.136 19 C -0.144 4.144 20 C -0.137 4.137 21 C 0.049 3.951 22 H 0.260 0.740 23 H 0.015 0.985 24 H 0.013 0.987 25 H 0.045 0.955 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.028 0.972 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.043 0.957 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.504 -21.660 2.370 22.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.141 4.141 11 C -0.075 4.075 12 N -0.256 5.256 13 C -0.087 4.087 14 C -0.174 4.174 15 C -0.105 4.105 16 H 0.100 0.900 17 C -0.118 4.118 18 C -0.173 4.173 19 C -0.182 4.182 20 C -0.174 4.174 21 C -0.079 4.079 22 H 0.069 0.931 23 H 0.033 0.967 24 H 0.031 0.969 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.046 0.954 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.061 0.939 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.701 -21.426 1.969 21.833 hybrid contribution -0.235 0.894 0.666 1.139 sum 3.466 -20.532 2.635 20.989 Atomic orbital electron populations 1.69973 1.06055 1.26496 1.51179 1.25032 0.94848 0.99242 0.95443 0.86598 0.79846 0.83493 0.78096 1.20665 1.21277 1.19881 1.21266 0.93064 0.91070 1.50140 0.92684 1.19080 0.94057 0.91469 0.97015 1.21630 0.99063 0.92710 1.00747 1.22449 0.93687 0.91406 0.99989 1.63629 1.27588 1.02955 1.31383 1.22823 0.99858 0.95780 0.90211 1.22881 1.01488 0.95718 0.97319 1.22351 0.98186 0.93959 0.96016 0.90009 1.22501 0.97987 0.93255 0.98087 1.22973 0.98153 0.96058 1.00124 1.22848 0.99270 0.96898 0.99165 1.22917 1.01308 0.95815 0.97354 1.23005 0.96129 0.88774 0.99993 0.93080 0.96656 0.96893 0.93588 0.92681 0.91458 0.95350 0.90928 0.92288 0.91210 0.91734 0.89459 0.90138 0.91768 0.90463 0.91676 0.91594 0.89977 0.93883 0.90758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.55 13.29 55.43 0.74 -26.81 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 8 H 0.05 1.57 7.74 -52.48 -0.41 1.16 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.10 -2.26 5.17 -26.73 -0.14 -2.40 16 11 C 0.05 0.96 4.53 -3.83 -0.02 0.95 16 12 N -0.53 -8.49 5.16 -231.25 -1.19 -9.69 16 13 C 0.04 0.59 6.20 -2.83 -0.02 0.57 16 14 C -0.14 -1.55 6.42 -24.75 -0.16 -1.71 16 15 C -0.09 -0.93 2.82 -88.33 -0.25 -1.18 16 16 H 0.08 0.89 7.97 -51.93 -0.41 0.47 16 17 C -0.10 -0.91 3.20 -89.81 -0.29 -1.20 16 18 C -0.14 -1.08 7.65 -25.83 -0.20 -1.28 16 19 C -0.14 -1.09 8.09 -25.83 -0.21 -1.29 16 20 C -0.14 -1.15 7.24 -25.93 -0.19 -1.34 16 21 C 0.05 0.64 5.75 -2.30 -0.01 0.63 16 22 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.99 7.09 -51.93 -0.37 0.62 16 26 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.07 1.24 8.08 -51.93 -0.42 0.82 16 28 H 0.03 0.53 7.98 -51.93 -0.41 0.11 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.06 0.92 6.87 -51.93 -0.36 0.56 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.73 7.97 -51.93 -0.41 0.32 16 33 H 0.09 0.83 8.03 -51.92 -0.42 0.42 16 34 H 0.08 0.63 7.98 -51.93 -0.41 0.22 16 35 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 39 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 40 H 0.04 0.58 7.70 -51.93 -0.40 0.18 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 321.17 15.07 4.84 4.84 Total: -1.00 -30.30 321.17 -10.47 -40.77 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -7.81 Total: -4.50 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -2.03 Total: -21.71 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: -0.46 Total: -36.50 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.30 -10.47 -40.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591062013.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.872 kcal (2) G-P(sol) polarization free energy of solvation -30.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds