Wall clock time and date at job start Sun Mar 29 2020 21:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 119.99860 * 2 1 4 4 H 1.48499 * 109.47066 * 270.00246 * 3 2 1 5 5 H 1.48504 * 109.46874 * 30.00146 * 3 2 1 6 6 H 1.48499 * 109.46929 * 150.00009 * 3 2 1 7 7 C 1.37867 * 119.99949 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99934 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00247 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47326 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.46988 * 179.97438 * 10 9 7 12 12 N 1.46900 * 109.47016 * 180.02562 * 11 10 9 13 13 C 1.47448 * 111.00041 * 69.15688 * 12 11 10 14 14 C 1.54321 * 107.23159 * 123.26094 * 13 12 11 15 15 C 1.55422 * 103.04810 * 22.28093 * 14 13 12 16 16 H 1.08998 * 111.00401 * 82.38939 * 15 14 13 17 17 C 1.53002 * 111.10766 * 206.29505 * 15 14 13 18 18 C 1.53777 * 113.61610 * 271.31317 * 17 15 14 19 19 C 1.53952 * 87.01807 * 220.04411 * 18 17 15 20 20 C 1.53773 * 87.11143 * 25.36246 * 19 18 17 21 21 C 1.47846 * 111.00020 * 189.99819 * 12 11 10 22 22 H 0.97005 * 120.00101 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47333 * 59.99285 * 9 7 2 24 24 H 1.09001 * 109.46990 * 299.99404 * 9 7 2 25 25 H 1.08999 * 109.46844 * 60.00021 * 10 9 7 26 26 H 1.09001 * 109.46944 * 299.99854 * 10 9 7 27 27 H 1.09001 * 109.47391 * 59.99878 * 11 10 9 28 28 H 1.09001 * 109.47271 * 299.99790 * 11 10 9 29 29 H 1.08999 * 109.88737 * 242.66366 * 13 12 11 30 30 H 1.08997 * 109.88833 * 3.69001 * 13 12 11 31 31 H 1.09004 * 110.70290 * 140.66846 * 14 13 12 32 32 H 1.09005 * 110.69934 * 263.71964 * 14 13 12 33 33 H 1.09009 * 112.84559 * 42.50763 * 17 15 14 34 34 H 1.09000 * 113.61328 * 334.56503 * 18 17 15 35 35 H 1.09007 * 113.61441 * 105.46853 * 18 17 15 36 36 H 1.08998 * 113.53810 * 270.80955 * 19 18 17 37 37 H 1.08998 * 113.74299 * 139.94576 * 19 18 17 38 38 H 1.09010 * 113.61623 * 220.09128 * 20 19 18 39 39 H 1.09000 * 113.61577 * 89.19001 * 20 19 18 40 40 H 1.09002 * 110.37464 * 332.46590 * 21 12 11 41 41 H 1.08999 * 110.37318 * 94.69366 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9870 0.0012 12 7 2.4349 -6.1036 0.0018 13 6 3.1505 -6.1863 1.2883 14 6 2.9090 -7.6009 1.8557 15 6 2.5425 -8.4280 0.5919 16 1 3.4389 -8.7472 0.0604 17 6 1.6660 -9.6287 0.9542 18 6 2.4679 -10.8911 1.3120 19 6 1.4093 -11.6881 0.5283 20 6 1.1422 -10.4003 -0.2685 21 6 1.7461 -7.3897 -0.2372 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5570 -0.8896 24 1 0.6241 -2.5567 0.8904 25 1 2.8720 -3.6043 0.8905 26 1 2.8720 -3.6043 -0.8895 27 1 0.8533 -5.0450 -0.8886 28 1 0.8540 -5.0445 0.8914 29 1 4.2172 -6.0274 1.1302 30 1 2.7622 -5.4364 1.9775 31 1 3.8149 -7.9894 2.3210 32 1 2.0838 -7.5947 2.5680 33 1 0.8911 -9.3831 1.6804 34 1 3.4596 -10.9210 0.8605 35 1 2.4807 -11.1123 2.3793 36 1 0.5644 -12.0069 1.1388 37 1 1.8250 -12.4959 -0.0739 38 1 0.0863 -10.2258 -0.4754 39 1 1.7707 -10.2958 -1.1529 40 1 0.7141 -7.3378 0.1100 41 1 1.7768 -7.6456 -1.2963 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591062013.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:32 Heat of formation + Delta-G solvation = -20.691777 kcal Electronic energy + Delta-G solvation = -16739.895387 eV Core-core repulsion = 14232.347350 eV Total energy + Delta-G solvation = -2507.548037 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.70463 -38.81035 -36.05660 -34.18212 -31.76148 -30.11129 -28.22160 -26.43391 -25.55584 -24.46538 -22.48225 -21.58244 -20.89243 -20.27937 -18.49122 -17.15635 -16.85618 -16.47137 -16.13879 -15.67550 -14.93801 -14.81359 -14.39947 -14.16821 -13.76549 -13.49617 -13.33330 -13.21961 -13.14085 -12.86614 -12.63731 -12.50155 -12.26595 -12.12541 -11.87706 -11.57340 -11.48643 -11.41722 -11.33734 -11.14758 -10.89348 -10.81122 -10.56458 -9.24398 -8.21225 -6.32646 1.39125 1.41082 1.52316 2.40280 3.04872 3.11590 3.45973 3.71717 3.80874 3.91354 3.99055 4.13104 4.24304 4.27415 4.39391 4.43310 4.53088 4.67981 4.71275 4.75636 4.85938 4.93084 4.94308 4.96497 5.00586 5.03075 5.05999 5.13008 5.14853 5.18911 5.24292 5.34736 5.49342 5.50655 5.68798 5.72057 5.83895 6.10952 6.12207 6.27219 6.83774 7.36620 8.90855 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.067717 B = 0.003642 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.383370 B = 7687.163063 C = 7896.323816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.544 4.544 8 H 0.058 0.942 9 C 0.026 3.974 10 C -0.087 4.087 11 C 0.065 3.935 12 N -0.542 5.542 13 C 0.036 3.964 14 C -0.128 4.128 15 C -0.075 4.075 16 H 0.086 0.914 17 C -0.101 4.101 18 C -0.131 4.131 19 C -0.140 4.140 20 C -0.139 4.139 21 C 0.046 3.954 22 H 0.264 0.736 23 H -0.009 1.009 24 H -0.011 1.011 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.023 0.977 29 H 0.075 0.925 30 H 0.042 0.958 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.082 0.918 40 H 0.039 0.961 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.753 -22.610 2.629 23.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.582 4.582 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.125 4.125 11 C -0.063 4.063 12 N -0.266 5.266 13 C -0.092 4.092 14 C -0.166 4.166 15 C -0.094 4.094 16 H 0.105 0.895 17 C -0.120 4.120 18 C -0.168 4.168 19 C -0.177 4.177 20 C -0.176 4.176 21 C -0.081 4.081 22 H 0.073 0.927 23 H 0.010 0.990 24 H 0.008 0.992 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.042 0.958 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.058 0.942 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.959 -22.399 2.229 23.049 hybrid contribution -0.651 1.174 0.572 1.459 sum 4.308 -21.225 2.801 21.838 Atomic orbital electron populations 1.70104 1.07823 1.27824 1.51686 1.26012 0.95820 1.03453 0.94635 0.85417 0.78638 0.78230 0.78585 1.19658 1.20542 1.18748 1.21683 0.93502 0.92403 1.50596 0.92345 1.18972 0.94374 0.93140 0.94659 1.21373 0.97908 0.92798 1.00470 1.22154 0.93548 0.90971 0.99632 1.63572 1.27137 1.03357 1.32515 1.22888 0.99581 0.97391 0.89337 1.22842 1.02475 0.93784 0.97527 1.22298 0.98198 0.93775 0.95108 0.89527 1.22489 0.97974 0.92972 0.98519 1.22963 0.98269 0.95004 1.00610 1.22840 0.99306 0.96643 0.98960 1.22938 1.01149 0.96352 0.97200 1.23084 0.96143 0.88083 1.00793 0.92711 0.99023 0.99217 0.93453 0.93125 0.91777 0.95834 0.90663 0.93911 0.89273 0.91649 0.89832 0.89722 0.91218 0.90017 0.90882 0.91861 0.89944 0.94237 0.90343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.21 13.29 21.44 0.28 -57.93 16 2 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 3 Si 0.97 45.30 29.54 68.60 2.03 47.32 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 6 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.54 -32.23 9.11 25.60 0.23 -32.00 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.45 4.97 29.85 0.15 1.60 16 10 C -0.09 -3.89 5.17 30.59 0.16 -3.74 16 11 C 0.07 2.44 4.53 86.30 0.39 2.83 16 12 N -0.54 -17.04 5.16 -885.53 -4.57 -21.62 16 13 C 0.04 1.00 6.20 86.65 0.54 1.54 16 14 C -0.13 -2.69 6.42 31.88 0.20 -2.48 16 15 C -0.07 -1.48 2.82 -9.31 -0.03 -1.50 16 16 H 0.09 1.66 7.97 -2.39 -0.02 1.64 16 17 C -0.10 -1.64 3.20 -10.27 -0.03 -1.68 16 18 C -0.13 -1.75 7.65 31.18 0.24 -1.52 16 19 C -0.14 -1.78 8.09 31.18 0.25 -1.53 16 20 C -0.14 -2.10 7.24 31.12 0.23 -1.87 16 21 C 0.05 1.17 5.75 86.77 0.50 1.67 16 22 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 23 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 24 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 25 H 0.05 2.07 7.09 -2.39 -0.02 2.05 16 26 H 0.05 2.27 8.14 -2.39 -0.02 2.26 16 27 H 0.06 2.41 8.08 -2.39 -0.02 2.40 16 28 H 0.02 0.89 7.98 -2.39 -0.02 0.87 16 29 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.04 1.32 6.87 -2.39 -0.02 1.31 16 31 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.06 1.38 7.97 -2.38 -0.02 1.36 16 33 H 0.08 1.45 8.03 -2.38 -0.02 1.43 16 34 H 0.08 1.08 7.98 -2.39 -0.02 1.06 16 35 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 37 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.08 1.24 8.10 -2.39 -0.02 1.22 16 40 H 0.04 1.03 7.70 -2.39 -0.02 1.01 16 41 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -64.75 321.17 1.98 -62.78 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: 0.95 Total: 7.77 kcal Atomic # 6 Polarization: -41.61 SS G_CDS: 3.29 Total: -38.32 kcal Atomic # 7 Polarization: -75.26 SS G_CDS: -4.29 Total: -79.54 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -64.75 1.98 -62.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591062013.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.084 kcal (2) G-P(sol) polarization free energy of solvation -64.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds