Wall clock time and date at job start Sun Mar 29 2020 21:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47105 * 2 1 4 4 C 1.46504 * 119.99904 * 269.99556 * 3 2 1 5 5 C 1.52998 * 109.46981 * 270.00338 * 4 3 2 6 6 C 1.53000 * 109.47048 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.47288 * 179.97438 * 6 5 4 8 8 H 1.08003 * 119.99851 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00135 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00064 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99904 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47299 * 60.00171 * 11 9 7 13 13 H 1.48507 * 109.46860 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.46853 * 299.99588 * 11 9 7 15 15 C 1.40800 * 120.00317 * 89.99986 * 3 2 1 16 16 C 1.40221 * 126.06682 * 179.97438 * 15 3 2 17 17 N 1.30858 * 108.36219 * 180.02562 * 16 15 3 18 18 N 1.40082 * 108.35908 * 359.74254 * 17 16 15 19 19 C 1.46506 * 126.06772 * 180.26967 * 18 17 16 20 20 C 1.35706 * 126.06435 * 359.97438 * 15 3 2 21 21 H 1.08997 * 109.47297 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47360 * 300.00792 * 1 2 3 23 23 H 1.09004 * 109.46780 * 60.00539 * 1 2 3 24 24 H 1.08999 * 109.47360 * 239.99208 * 2 1 3 25 25 H 1.09004 * 109.46780 * 119.99461 * 2 1 3 26 26 H 1.09005 * 109.47140 * 30.00092 * 4 3 2 27 27 H 1.08993 * 109.47110 * 150.00276 * 4 3 2 28 28 H 1.08997 * 109.47272 * 299.99710 * 5 4 3 29 29 H 1.09006 * 109.47410 * 59.99750 * 5 4 3 30 30 H 1.09005 * 109.47358 * 299.99929 * 6 5 4 31 31 H 1.09002 * 109.47051 * 60.00273 * 6 5 4 32 32 H 0.96994 * 120.00323 * 180.02562 * 10 9 7 33 33 H 1.07997 * 125.82117 * 0.05261 * 16 15 3 34 34 H 1.08996 * 109.46952 * 270.17805 * 19 18 17 35 35 H 1.09001 * 109.47057 * 30.18252 * 19 18 17 36 36 H 1.09005 * 109.46490 * 150.18267 * 19 18 17 37 37 H 1.08002 * 126.22316 * 359.97438 * 20 15 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.7076 1.8313 -1.7103 6 6 3.9625 2.5519 -3.0357 7 6 5.3860 2.3156 -3.4704 8 1 6.0430 1.7114 -2.8623 9 6 5.8493 2.8698 -4.6448 10 7 5.0491 3.6051 -5.3855 11 14 7.6135 2.5762 -5.1839 12 1 7.8413 1.1194 -5.3603 13 1 7.8609 3.2758 -6.4703 14 1 8.5409 3.1006 -4.1495 15 6 2.2530 2.0450 1.2193 16 6 2.7183 3.3595 1.3674 17 7 2.8115 3.6221 2.6460 18 7 2.4040 2.4881 3.3603 19 6 2.3511 2.3603 4.8188 20 6 2.0690 1.5262 2.4597 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.5818 1.6876 -2.0285 27 1 2.0957 3.1409 -1.1385 28 1 4.3884 2.2154 -0.9507 29 1 3.8746 0.7620 -1.8406 30 1 3.2817 2.1674 -3.7952 31 1 3.7955 3.6212 -2.9058 32 1 5.3748 3.9946 -6.2119 33 1 2.9583 4.0394 0.5634 34 1 3.3071 1.9869 5.1857 35 1 2.1476 3.3353 5.2618 36 1 1.5591 1.6637 5.0939 37 1 1.7165 0.5315 2.6896 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594037112.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:13 Heat of formation + Delta-G solvation = 72.330714 kcal Electronic energy + Delta-G solvation = -16587.214534 eV Core-core repulsion = 13980.159912 eV Total energy + Delta-G solvation = -2607.054622 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.81902 -36.98141 -33.78841 -32.89616 -31.79380 -30.29482 -28.85642 -26.54135 -25.62955 -23.43349 -22.19531 -20.62313 -20.22391 -19.26889 -17.27606 -16.17539 -15.39407 -15.19546 -14.77767 -14.36581 -14.29499 -13.68027 -13.38381 -13.32215 -12.83183 -12.50517 -12.38278 -12.10950 -11.99393 -11.65341 -11.18625 -10.91594 -10.76872 -10.72131 -10.50671 -10.45013 -9.69448 -9.59689 -9.24589 -9.12728 -8.98970 -8.30084 -6.62763 -5.95261 -3.97347 2.09523 2.67110 3.24526 3.36604 3.40611 3.43558 3.69387 4.50391 4.68272 4.99176 5.11473 5.16846 5.29830 5.34019 5.40242 5.42153 5.54905 5.71509 5.77960 5.86672 5.94222 6.06178 6.10110 6.32037 6.32497 6.61150 6.74496 6.90210 7.18672 7.18894 7.69219 7.72697 7.86190 7.97260 8.04060 8.04964 8.49121 9.09444 9.66455 11.15746 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.028313 B = 0.005044 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.718479 B = 5550.287395 C = 6128.115221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.133 3.867 3 N -0.622 5.622 4 C 0.135 3.865 5 C -0.126 4.126 6 C 0.023 3.977 7 C -0.518 4.518 8 H 0.053 0.947 9 C 0.057 3.943 10 N -0.897 5.897 11 Si 0.891 3.109 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.082 3.918 16 C 0.017 3.983 17 N -0.281 5.281 18 N -0.385 5.385 19 C 0.115 3.885 20 C -0.047 4.047 21 H 0.056 0.944 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.071 0.929 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.048 0.952 29 H 0.046 0.954 30 H 0.015 0.985 31 H 0.016 0.984 32 H 0.260 0.740 33 H 0.183 0.817 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.198 -5.977 16.267 19.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.008 3.992 3 N -0.339 5.339 4 C 0.012 3.988 5 C -0.165 4.165 6 C -0.015 4.015 7 C -0.556 4.556 8 H 0.071 0.929 9 C -0.144 4.144 10 N -0.536 5.536 11 Si 0.718 3.282 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.203 1.203 15 C -0.024 4.024 16 C -0.172 4.172 17 N -0.104 5.104 18 N -0.174 5.174 19 C -0.027 4.027 20 C -0.193 4.193 21 H 0.075 0.925 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.090 0.910 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.033 0.967 31 H 0.034 0.966 32 H 0.070 0.930 33 H 0.200 0.800 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -8.933 -5.092 16.992 19.861 hybrid contribution 0.800 -0.831 -1.019 1.539 sum -8.133 -5.923 15.973 18.878 Atomic orbital electron populations 1.22251 0.97443 1.01071 1.02183 1.21144 0.93062 0.83137 1.01828 1.46049 1.74017 1.12287 1.01561 1.21503 0.97654 0.96310 0.83316 1.22057 0.94175 1.00476 0.99750 1.19052 0.96523 0.95415 0.90507 1.21217 0.97102 1.31173 1.06150 0.92892 1.25009 0.97458 0.95262 0.96670 1.69948 1.35520 1.33923 1.14219 0.86684 0.85334 0.78308 0.77827 1.20311 1.21304 1.20275 1.17776 1.05427 0.92767 0.86479 1.23671 1.03403 0.95884 0.94193 1.77170 1.20898 1.07674 1.04621 1.47975 1.54056 1.09692 1.05672 1.21639 1.02407 1.03484 0.75180 1.21540 1.13136 0.96266 0.88359 0.92538 0.92919 0.92504 0.91044 0.92153 0.91715 0.91849 0.93276 0.93557 0.96680 0.96587 0.93006 0.80026 0.91518 0.89868 0.90133 0.81900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 10.24 37.16 0.38 -1.45 16 2 C 0.13 1.64 6.15 -4.04 -0.02 1.62 16 3 N -0.62 -9.46 2.64 -171.94 -0.45 -9.91 16 4 C 0.13 2.31 5.44 -4.04 -0.02 2.29 16 5 C -0.13 -2.62 5.48 -26.73 -0.15 -2.76 16 6 C 0.02 0.58 4.97 -27.88 -0.14 0.45 16 7 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 10 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 11 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 C 0.08 1.28 6.70 -83.90 -0.56 0.72 16 16 C 0.02 0.28 11.14 -17.22 -0.19 0.09 16 17 N -0.28 -4.58 12.57 30.70 0.39 -4.19 16 18 N -0.38 -5.18 4.04 -67.79 -0.27 -5.45 16 19 C 0.11 0.96 11.48 59.85 0.69 1.65 16 20 C -0.05 -0.63 10.67 -16.63 -0.18 -0.80 16 21 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 25 H 0.06 0.67 6.88 -51.93 -0.36 0.31 16 26 H 0.06 1.07 8.07 -51.93 -0.42 0.65 16 27 H 0.06 1.08 6.91 -51.93 -0.36 0.72 16 28 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.18 2.88 7.32 -52.49 -0.38 2.50 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.16 1.71 7.26 -52.49 -0.38 1.32 16 LS Contribution 312.22 15.07 4.71 4.71 Total: -1.00 -32.63 312.22 -6.62 -39.24 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -6.09 Total: -3.10 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -0.61 Total: -11.86 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: 0.39 Total: -45.96 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.63 -6.62 -39.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594037112.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.572 kcal (2) G-P(sol) polarization free energy of solvation -32.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds