Wall clock time and date at job start Sun Mar 29 2020 21:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47105 * 2 1 4 4 C 1.46504 * 119.99904 * 269.99556 * 3 2 1 5 5 C 1.52998 * 109.46981 * 270.00338 * 4 3 2 6 6 C 1.53000 * 109.47048 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.47288 * 179.97438 * 6 5 4 8 8 H 1.08003 * 119.99851 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00135 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00064 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99904 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47299 * 60.00171 * 11 9 7 13 13 H 1.48507 * 109.46860 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.46853 * 299.99588 * 11 9 7 15 15 C 1.40800 * 120.00317 * 89.99986 * 3 2 1 16 16 C 1.40221 * 126.06682 * 179.97438 * 15 3 2 17 17 N 1.30858 * 108.36219 * 180.02562 * 16 15 3 18 18 N 1.40082 * 108.35908 * 359.74254 * 17 16 15 19 19 C 1.46506 * 126.06772 * 180.26967 * 18 17 16 20 20 C 1.35706 * 126.06435 * 359.97438 * 15 3 2 21 21 H 1.08997 * 109.47297 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47360 * 300.00792 * 1 2 3 23 23 H 1.09004 * 109.46780 * 60.00539 * 1 2 3 24 24 H 1.08999 * 109.47360 * 239.99208 * 2 1 3 25 25 H 1.09004 * 109.46780 * 119.99461 * 2 1 3 26 26 H 1.09005 * 109.47140 * 30.00092 * 4 3 2 27 27 H 1.08993 * 109.47110 * 150.00276 * 4 3 2 28 28 H 1.08997 * 109.47272 * 299.99710 * 5 4 3 29 29 H 1.09006 * 109.47410 * 59.99750 * 5 4 3 30 30 H 1.09005 * 109.47358 * 299.99929 * 6 5 4 31 31 H 1.09002 * 109.47051 * 60.00273 * 6 5 4 32 32 H 0.96994 * 120.00323 * 180.02562 * 10 9 7 33 33 H 1.07997 * 125.82117 * 0.05261 * 16 15 3 34 34 H 1.08996 * 109.46952 * 270.17805 * 19 18 17 35 35 H 1.09001 * 109.47057 * 30.18252 * 19 18 17 36 36 H 1.09005 * 109.46490 * 150.18267 * 19 18 17 37 37 H 1.08002 * 126.22316 * 359.97438 * 20 15 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.7076 1.8313 -1.7103 6 6 3.9625 2.5519 -3.0357 7 6 5.3860 2.3156 -3.4704 8 1 6.0430 1.7114 -2.8623 9 6 5.8493 2.8698 -4.6448 10 7 5.0491 3.6051 -5.3855 11 14 7.6135 2.5762 -5.1839 12 1 7.8413 1.1194 -5.3603 13 1 7.8609 3.2758 -6.4703 14 1 8.5409 3.1006 -4.1495 15 6 2.2530 2.0450 1.2193 16 6 2.7183 3.3595 1.3674 17 7 2.8115 3.6221 2.6460 18 7 2.4040 2.4881 3.3603 19 6 2.3511 2.3603 4.8188 20 6 2.0690 1.5262 2.4597 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.5818 1.6876 -2.0285 27 1 2.0957 3.1409 -1.1385 28 1 4.3884 2.2154 -0.9507 29 1 3.8746 0.7620 -1.8406 30 1 3.2817 2.1674 -3.7952 31 1 3.7955 3.6212 -2.9058 32 1 5.3748 3.9946 -6.2119 33 1 2.9583 4.0394 0.5634 34 1 3.3071 1.9869 5.1857 35 1 2.1476 3.3353 5.2618 36 1 1.5591 1.6637 5.0939 37 1 1.7165 0.5315 2.6896 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594037112.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:12 Heat of formation + Delta-G solvation = 52.777831 kcal Electronic energy + Delta-G solvation = -16588.062411 eV Core-core repulsion = 13980.159912 eV Total energy + Delta-G solvation = -2607.902499 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.91969 -38.20949 -35.71099 -33.85028 -33.61386 -31.39898 -30.23475 -27.95793 -26.83983 -25.01961 -23.40510 -22.11370 -21.57573 -20.45345 -18.59944 -18.13528 -16.63812 -16.39641 -16.20260 -15.81369 -15.49357 -14.97385 -14.71394 -14.47805 -14.17621 -13.64083 -13.58901 -13.34143 -13.19295 -13.05234 -12.71925 -12.54612 -12.48185 -12.39602 -11.86834 -11.59427 -11.41472 -11.35964 -11.27448 -10.55058 -10.52360 -10.18801 -8.19283 -7.76343 -6.28860 1.00107 1.39634 1.42649 1.50570 1.74036 2.06776 2.41311 2.56430 3.14549 3.82957 4.00775 4.19254 4.28797 4.42052 4.42306 4.52978 4.63573 4.68356 4.71176 4.76163 4.77348 4.90012 4.92485 5.05490 5.10744 5.18181 5.26867 5.45343 5.50087 5.55052 5.77956 5.88688 6.23529 6.27161 6.54468 6.80233 6.87512 6.92421 7.39890 8.93119 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.028313 B = 0.005044 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.718479 B = 5550.287395 C = 6128.115221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.128 3.872 3 N -0.626 5.626 4 C 0.148 3.852 5 C -0.105 4.105 6 C 0.027 3.973 7 C -0.544 4.544 8 H 0.053 0.947 9 C 0.002 3.998 10 N -0.931 5.931 11 Si 0.961 3.039 12 H -0.267 1.267 13 H -0.281 1.281 14 H -0.270 1.270 15 C 0.055 3.945 16 C -0.008 4.008 17 N -0.311 5.311 18 N -0.379 5.379 19 C 0.102 3.898 20 C -0.026 4.026 21 H 0.079 0.921 22 H 0.052 0.948 23 H 0.042 0.958 24 H 0.065 0.935 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.036 0.964 29 H 0.045 0.955 30 H -0.003 1.003 31 H -0.007 1.007 32 H 0.264 0.736 33 H 0.171 0.829 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.114 0.886 37 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.231 -7.797 17.924 21.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.005 3.995 3 N -0.344 5.344 4 C 0.024 3.976 5 C -0.145 4.145 6 C -0.011 4.011 7 C -0.582 4.582 8 H 0.071 0.929 9 C -0.196 4.196 10 N -0.572 5.572 11 Si 0.786 3.214 12 H -0.191 1.191 13 H -0.206 1.206 14 H -0.195 1.195 15 C -0.051 4.051 16 C -0.195 4.195 17 N -0.136 5.136 18 N -0.168 5.168 19 C -0.038 4.038 20 C -0.173 4.173 21 H 0.098 0.902 22 H 0.071 0.929 23 H 0.061 0.939 24 H 0.084 0.916 25 H 0.098 0.902 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.015 0.985 31 H 0.011 0.989 32 H 0.073 0.927 33 H 0.188 0.812 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.133 0.867 37 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -8.974 -6.918 18.692 21.859 hybrid contribution 0.782 -0.282 -1.420 1.646 sum -8.192 -7.200 17.272 20.427 Atomic orbital electron populations 1.22157 0.96003 1.02336 1.01502 1.21348 0.94169 0.81509 1.02507 1.45970 1.74573 1.13244 1.00565 1.21139 0.95069 0.96510 0.84837 1.21799 0.96652 0.99361 0.96663 1.18944 0.95109 0.94431 0.92570 1.21649 0.98453 1.31406 1.06647 0.92865 1.25926 1.02174 0.94798 0.96672 1.70075 1.37694 1.34721 1.14675 0.85562 0.79589 0.78722 0.77548 1.19146 1.20584 1.19542 1.17973 1.07067 0.92718 0.87369 1.23641 1.04757 0.96751 0.94361 1.77105 1.22289 1.09430 1.04777 1.48492 1.52112 1.08754 1.07445 1.22087 1.04487 1.04920 0.72259 1.22070 1.10681 0.97158 0.87426 0.90228 0.92893 0.93871 0.91607 0.90224 0.91143 0.92400 0.94513 0.93604 0.98502 0.98888 0.92750 0.81199 0.90167 0.89373 0.86734 0.78357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 10.24 71.98 0.74 -2.33 16 2 C 0.13 2.90 6.15 86.38 0.53 3.43 16 3 N -0.63 -18.54 2.64 -697.89 -1.84 -20.38 16 4 C 0.15 5.18 5.44 86.38 0.47 5.65 16 5 C -0.11 -4.51 5.48 30.59 0.17 -4.34 16 6 C 0.03 1.46 4.97 29.85 0.15 1.60 16 7 C -0.54 -31.85 9.11 25.60 0.23 -31.62 16 8 H 0.05 3.04 7.74 -2.91 -0.02 3.01 16 9 C 0.00 0.12 5.46 84.65 0.46 0.59 16 10 N -0.93 -57.41 13.29 21.45 0.28 -57.12 16 11 Si 0.96 45.21 29.54 68.60 2.03 47.24 16 12 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 13 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 14 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 15 C 0.06 1.66 6.70 37.59 0.25 1.91 16 16 C -0.01 -0.28 11.14 85.32 0.95 0.67 16 17 N -0.31 -10.10 12.57 -56.78 -0.71 -10.81 16 18 N -0.38 -9.38 4.04 -368.37 -1.49 -10.87 16 19 C 0.10 1.38 11.48 127.77 1.47 2.85 16 20 C -0.03 -0.61 10.67 83.47 0.89 0.28 16 21 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 22 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.07 1.57 8.07 -2.39 -0.02 1.55 16 25 H 0.08 1.49 6.88 -2.39 -0.02 1.48 16 26 H 0.07 2.36 8.07 -2.38 -0.02 2.34 16 27 H 0.06 2.07 6.91 -2.39 -0.02 2.05 16 28 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 30 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 16 31 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 32 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 33 H 0.17 5.82 7.32 -2.91 -0.02 5.80 16 34 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.20 3.21 7.26 -2.91 -0.02 3.19 16 Total: -1.00 -71.24 312.22 5.60 -65.64 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 1.02 Total: 7.61 kcal Atomic # 6 Polarization: -27.62 SS G_CDS: 6.31 Total: -21.31 kcal Atomic # 7 Polarization: -95.42 SS G_CDS: -3.76 Total: -99.18 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -71.24 5.60 -65.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594037112.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.418 kcal (2) G-P(sol) polarization free energy of solvation -71.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds