Wall clock time and date at job start Sun Mar 29 2020 22:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 112.83895 * 2 1 4 4 C 1.53638 * 113.53234 * 130.98930 * 2 1 3 5 5 H 1.09004 * 113.51845 * 335.76518 * 4 2 1 6 6 N 1.46899 * 113.52213 * 205.21636 * 4 2 1 7 7 C 1.46904 * 110.99924 * 157.87936 * 6 4 2 8 8 C 1.52994 * 109.47353 * 179.97438 * 7 6 4 9 9 C 1.50699 * 109.47153 * 179.97438 * 8 7 6 10 10 H 1.07998 * 120.00242 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99970 * 179.97438 * 9 8 7 12 12 N 1.31509 * 119.99992 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 119.99895 * 0.02562 * 11 9 8 14 14 H 1.48505 * 109.47246 * 90.00015 * 13 11 9 15 15 H 1.48502 * 109.47135 * 209.99939 * 13 11 9 16 16 H 1.48500 * 109.47264 * 329.99884 * 13 11 9 17 17 C 1.53810 * 87.71131 * 90.48944 * 4 2 1 18 18 H 1.08993 * 115.63432 * 266.36416 * 17 4 2 19 19 C 1.53917 * 112.99031 * 130.61531 * 17 4 2 20 20 C 1.54234 * 106.66811 * 266.11610 * 19 17 4 21 21 C 1.55302 * 104.21976 * 23.64936 * 20 19 17 22 22 C 1.53515 * 113.53402 * 229.01571 * 2 1 3 23 23 H 1.09003 * 115.95595 * 27.69171 * 22 2 1 24 24 H 1.09004 * 109.46710 * 308.51987 * 1 2 3 25 25 H 1.08996 * 109.46653 * 68.51372 * 1 2 3 26 26 H 1.08994 * 109.47102 * 188.51740 * 1 2 3 27 27 H 1.08996 * 109.47154 * 185.45327 * 3 2 1 28 28 H 1.08997 * 109.47070 * 305.45531 * 3 2 1 29 29 H 1.09008 * 109.46490 * 65.45366 * 3 2 1 30 30 H 1.00905 * 111.00280 * 33.93049 * 6 4 2 31 31 H 1.08998 * 109.47091 * 59.99652 * 7 6 4 32 32 H 1.08999 * 109.46824 * 300.00351 * 7 6 4 33 33 H 1.09001 * 109.47091 * 300.00292 * 8 7 6 34 34 H 1.09003 * 109.46876 * 60.00192 * 8 7 6 35 35 H 0.97001 * 120.00103 * 179.97438 * 12 11 9 36 36 H 1.09007 * 110.01579 * 25.41907 * 19 17 4 37 37 H 1.08999 * 110.01769 * 146.76120 * 19 17 4 38 38 H 1.09002 * 110.48409 * 142.30859 * 20 19 17 39 39 H 1.09000 * 110.48539 * 264.82093 * 20 19 17 40 40 H 1.08996 * 110.83648 * 203.61177 * 21 20 19 41 41 H 1.09000 * 110.70319 * 80.23745 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1239 1.4101 0.0000 4 6 2.1434 -0.9239 1.0633 5 1 1.4815 -1.1145 1.9081 6 7 3.4948 -0.5242 1.4781 7 6 3.8218 -1.0697 2.8024 8 6 5.2336 -0.6336 3.1991 9 6 5.5688 -1.1927 4.5578 10 1 4.8473 -1.7988 5.0854 11 6 6.7972 -0.9313 5.1269 12 7 7.0899 -1.4196 6.3124 13 14 8.0455 0.1165 4.2141 14 1 7.8522 1.5439 4.5752 15 1 9.4178 -0.3079 4.5907 16 1 7.8589 -0.0536 2.7507 17 6 2.1310 -2.0436 0.0088 18 1 1.2529 -2.6893 0.0170 19 6 3.4804 -2.7746 -0.1079 20 6 4.2632 -2.0801 -1.2410 21 6 3.6457 -0.6570 -1.3146 22 6 2.1430 -0.9231 -1.0625 23 1 1.5379 -1.0934 -1.9530 24 1 -0.3633 0.6401 0.8041 25 1 -0.3632 0.3764 -0.9562 26 1 -0.3633 -1.0163 0.1522 27 1 3.2077 1.3479 -0.0977 28 1 1.7155 1.9763 -0.8371 29 1 1.8714 1.9106 0.9349 30 1 3.5947 0.4798 1.4660 31 1 3.7741 -2.1581 2.7689 32 1 3.1065 -0.6971 3.5355 33 1 5.9486 -1.0066 2.4658 34 1 5.2817 0.4548 3.2325 35 1 7.9542 -1.2360 6.7126 36 1 4.0307 -2.6940 0.8296 37 1 3.3165 -3.8234 -0.3550 38 1 5.3231 -2.0232 -0.9931 39 1 4.1206 -2.6093 -2.1831 40 1 3.8000 -0.2180 -2.3003 41 1 4.0603 -0.0164 -0.5363 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595031969.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:35 Heat of formation + Delta-G solvation = 10.093778 kcal Electronic energy + Delta-G solvation = -17927.315513 eV Core-core repulsion = 15421.102438 eV Total energy + Delta-G solvation = -2506.213075 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.03222 -34.98636 -34.02744 -32.50302 -30.00228 -29.26420 -27.83375 -26.76081 -24.47452 -22.55807 -21.11791 -20.39619 -19.53182 -17.30787 -16.72568 -16.14285 -15.46164 -15.13902 -14.28977 -13.88219 -13.64581 -13.29682 -12.84944 -12.73223 -12.65101 -12.32433 -12.16771 -12.00830 -11.51401 -11.43459 -11.10713 -11.03312 -10.74983 -10.59129 -10.36652 -10.15369 -10.00132 -9.80049 -9.79796 -9.67390 -9.36552 -9.20442 -8.52386 -7.80570 -6.03081 -4.01202 3.32546 3.40222 3.45830 4.39772 4.47261 4.54235 4.62331 4.84422 5.02241 5.20641 5.31590 5.41606 5.49710 5.61180 5.63734 5.66175 5.76158 5.79057 5.84083 5.88876 5.99873 6.03972 6.11731 6.15631 6.23204 6.25014 6.30215 6.38764 6.39532 6.47649 6.67845 6.80156 6.84592 6.96051 7.21919 7.40647 7.68342 7.80637 7.94473 8.55024 9.01476 9.59464 11.10366 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.030791 B = 0.006324 C = 0.006119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.142815 B = 4426.507671 C = 4574.585547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.087 4.087 3 C -0.147 4.147 4 C 0.079 3.921 5 H 0.050 0.950 6 N -0.670 5.670 7 C 0.073 3.927 8 C -0.009 4.009 9 C -0.520 4.520 10 H 0.070 0.930 11 C 0.067 3.933 12 N -0.904 5.904 13 Si 0.881 3.119 14 H -0.279 1.279 15 H -0.289 1.289 16 H -0.263 1.263 17 C -0.109 4.109 18 H 0.085 0.915 19 C -0.106 4.106 20 C -0.109 4.109 21 C -0.107 4.107 22 C -0.098 4.098 23 H 0.073 0.927 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.337 0.663 31 H 0.065 0.935 32 H 0.020 0.980 33 H 0.025 0.975 34 H 0.007 0.993 35 H 0.263 0.737 36 H 0.085 0.915 37 H 0.043 0.957 38 H 0.062 0.938 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.895 2.738 -15.908 19.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.088 4.088 3 C -0.204 4.204 4 C -0.032 4.032 5 H 0.068 0.932 6 N -0.302 5.302 7 C -0.055 4.055 8 C -0.047 4.047 9 C -0.559 4.559 10 H 0.088 0.912 11 C -0.134 4.134 12 N -0.544 5.544 13 Si 0.708 3.292 14 H -0.205 1.205 15 H -0.215 1.215 16 H -0.187 1.187 17 C -0.128 4.128 18 H 0.103 0.897 19 C -0.143 4.143 20 C -0.146 4.146 21 C -0.144 4.144 22 C -0.116 4.116 23 H 0.092 0.908 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.158 0.842 31 H 0.083 0.917 32 H 0.038 0.962 33 H 0.043 0.957 34 H 0.025 0.975 35 H 0.072 0.928 36 H 0.103 0.897 37 H 0.062 0.938 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.430 2.220 -16.089 19.302 hybrid contribution 0.079 1.001 0.314 1.051 sum -10.350 3.221 -15.776 19.141 Atomic orbital electron populations 1.21533 0.93560 1.01720 1.01465 1.21922 0.94901 0.94569 0.97369 1.21830 1.01950 0.95353 1.01251 1.22572 0.89983 0.95701 0.94930 0.93201 1.60641 1.23469 1.16227 1.29896 1.22024 0.98121 0.99383 0.85952 1.19534 0.92304 0.95787 0.97029 1.21077 1.01285 1.32552 1.00938 0.91178 1.25005 0.98117 0.95594 0.94702 1.69916 1.22778 1.45696 1.15963 0.86758 0.80631 0.80694 0.81102 1.20466 1.21478 1.18730 1.23365 0.97861 0.95002 0.96562 0.89684 1.21891 0.95272 0.96759 1.00393 1.22243 0.99584 0.95522 0.97287 1.22524 0.93283 0.97804 1.00801 1.23301 0.96525 0.96126 0.95676 0.90818 0.92643 0.92565 0.92525 0.90848 0.92765 0.92937 0.84215 0.91701 0.96176 0.95679 0.97462 0.92764 0.89653 0.93824 0.91964 0.93362 0.93335 0.88461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.27 9.08 37.16 0.34 -0.93 16 2 C -0.09 -1.02 1.30 -153.91 -0.20 -1.22 16 3 C -0.15 -1.65 7.76 37.16 0.29 -1.36 16 4 C 0.08 1.11 3.53 -66.96 -0.24 0.88 16 5 H 0.05 0.75 7.84 -51.93 -0.41 0.34 16 6 N -0.67 -10.85 3.09 -105.93 -0.33 -11.18 16 7 C 0.07 1.46 4.99 -3.83 -0.02 1.44 16 8 C -0.01 -0.21 4.30 -27.89 -0.12 -0.33 16 9 C -0.52 -14.92 9.66 -34.44 -0.33 -15.25 16 10 H 0.07 2.16 7.99 -52.49 -0.42 1.75 16 11 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 12 N -0.90 -28.13 13.96 55.43 0.77 -27.36 16 13 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 15 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 16 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 17 C -0.11 -1.44 4.51 -88.65 -0.40 -1.84 16 18 H 0.08 1.04 7.99 -51.93 -0.41 0.63 16 19 C -0.11 -1.52 6.05 -25.61 -0.16 -1.68 16 20 C -0.11 -1.46 6.84 -24.86 -0.17 -1.63 16 21 C -0.11 -1.36 5.45 -24.63 -0.13 -1.50 16 22 C -0.10 -1.18 4.37 -88.40 -0.39 -1.56 16 23 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.56 7.63 -51.93 -0.40 0.16 16 27 H 0.07 0.87 4.63 -51.93 -0.24 0.63 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 30 H 0.34 5.26 6.06 -39.29 -0.24 5.03 16 31 H 0.06 1.34 7.16 -51.93 -0.37 0.97 16 32 H 0.02 0.41 8.13 -51.93 -0.42 -0.01 16 33 H 0.02 0.61 7.20 -51.93 -0.37 0.24 16 34 H 0.01 0.17 7.57 -51.93 -0.39 -0.23 16 35 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 36 H 0.08 1.46 5.64 -51.92 -0.29 1.16 16 37 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.10 1.36 4.11 -51.93 -0.21 1.15 16 LS Contribution 302.11 15.07 4.55 4.55 Total: -1.00 -29.51 302.11 -8.45 -37.96 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -7.15 Total: 1.86 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: -1.63 Total: -23.11 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.45 Total: -38.54 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.51 -8.45 -37.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595031969.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.053 kcal (2) G-P(sol) polarization free energy of solvation -29.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds