Wall clock time and date at job start Sun Mar 29 2020 22:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 112.83895 * 2 1 4 4 C 1.53638 * 113.53234 * 130.98930 * 2 1 3 5 5 H 1.09004 * 113.51845 * 335.76518 * 4 2 1 6 6 N 1.46899 * 113.52213 * 205.21636 * 4 2 1 7 7 C 1.46904 * 110.99924 * 157.87936 * 6 4 2 8 8 C 1.52994 * 109.47353 * 179.97438 * 7 6 4 9 9 C 1.50699 * 109.47153 * 179.97438 * 8 7 6 10 10 H 1.07998 * 120.00242 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99970 * 179.97438 * 9 8 7 12 12 N 1.31509 * 119.99992 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 119.99895 * 0.02562 * 11 9 8 14 14 H 1.48505 * 109.47246 * 90.00015 * 13 11 9 15 15 H 1.48502 * 109.47135 * 209.99939 * 13 11 9 16 16 H 1.48500 * 109.47264 * 329.99884 * 13 11 9 17 17 C 1.53810 * 87.71131 * 90.48944 * 4 2 1 18 18 H 1.08993 * 115.63432 * 266.36416 * 17 4 2 19 19 C 1.53917 * 112.99031 * 130.61531 * 17 4 2 20 20 C 1.54234 * 106.66811 * 266.11610 * 19 17 4 21 21 C 1.55302 * 104.21976 * 23.64936 * 20 19 17 22 22 C 1.53515 * 113.53402 * 229.01571 * 2 1 3 23 23 H 1.09003 * 115.95595 * 27.69171 * 22 2 1 24 24 H 1.09004 * 109.46710 * 308.51987 * 1 2 3 25 25 H 1.08996 * 109.46653 * 68.51372 * 1 2 3 26 26 H 1.08994 * 109.47102 * 188.51740 * 1 2 3 27 27 H 1.08996 * 109.47154 * 185.45327 * 3 2 1 28 28 H 1.08997 * 109.47070 * 305.45531 * 3 2 1 29 29 H 1.09008 * 109.46490 * 65.45366 * 3 2 1 30 30 H 1.00905 * 111.00280 * 33.93049 * 6 4 2 31 31 H 1.08998 * 109.47091 * 59.99652 * 7 6 4 32 32 H 1.08999 * 109.46824 * 300.00351 * 7 6 4 33 33 H 1.09001 * 109.47091 * 300.00292 * 8 7 6 34 34 H 1.09003 * 109.46876 * 60.00192 * 8 7 6 35 35 H 0.97001 * 120.00103 * 179.97438 * 12 11 9 36 36 H 1.09007 * 110.01579 * 25.41907 * 19 17 4 37 37 H 1.08999 * 110.01769 * 146.76120 * 19 17 4 38 38 H 1.09002 * 110.48409 * 142.30859 * 20 19 17 39 39 H 1.09000 * 110.48539 * 264.82093 * 20 19 17 40 40 H 1.08996 * 110.83648 * 203.61177 * 21 20 19 41 41 H 1.09000 * 110.70319 * 80.23745 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1239 1.4101 0.0000 4 6 2.1434 -0.9239 1.0633 5 1 1.4815 -1.1145 1.9081 6 7 3.4948 -0.5242 1.4781 7 6 3.8218 -1.0697 2.8024 8 6 5.2336 -0.6336 3.1991 9 6 5.5688 -1.1927 4.5578 10 1 4.8473 -1.7988 5.0854 11 6 6.7972 -0.9313 5.1269 12 7 7.0899 -1.4196 6.3124 13 14 8.0455 0.1165 4.2141 14 1 7.8522 1.5439 4.5752 15 1 9.4178 -0.3079 4.5907 16 1 7.8589 -0.0536 2.7507 17 6 2.1310 -2.0436 0.0088 18 1 1.2529 -2.6893 0.0170 19 6 3.4804 -2.7746 -0.1079 20 6 4.2632 -2.0801 -1.2410 21 6 3.6457 -0.6570 -1.3146 22 6 2.1430 -0.9231 -1.0625 23 1 1.5379 -1.0934 -1.9530 24 1 -0.3633 0.6401 0.8041 25 1 -0.3632 0.3764 -0.9562 26 1 -0.3633 -1.0163 0.1522 27 1 3.2077 1.3479 -0.0977 28 1 1.7155 1.9763 -0.8371 29 1 1.8714 1.9106 0.9349 30 1 3.5947 0.4798 1.4660 31 1 3.7741 -2.1581 2.7689 32 1 3.1065 -0.6971 3.5355 33 1 5.9486 -1.0066 2.4658 34 1 5.2817 0.4548 3.2325 35 1 7.9542 -1.2360 6.7126 36 1 4.0307 -2.6940 0.8296 37 1 3.3165 -3.8234 -0.3550 38 1 5.3231 -2.0232 -0.9931 39 1 4.1206 -2.6093 -2.1831 40 1 3.8000 -0.2180 -2.3003 41 1 4.0603 -0.0164 -0.5363 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595031969.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:35 Heat of formation + Delta-G solvation = -6.061329 kcal Electronic energy + Delta-G solvation = -17928.016051 eV Core-core repulsion = 15421.102438 eV Total energy + Delta-G solvation = -2506.913613 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.07962 -36.61832 -35.11349 -34.50488 -31.55495 -30.53899 -28.82951 -27.76454 -26.18543 -23.88533 -22.26884 -22.08341 -20.60495 -18.98082 -18.34850 -17.26975 -16.69578 -16.33172 -16.11082 -15.18926 -15.10080 -14.73091 -14.44966 -13.91451 -13.79993 -13.65699 -13.27930 -13.04836 -12.92568 -12.89723 -12.40680 -12.16086 -12.03618 -11.92444 -11.82746 -11.77366 -11.46672 -11.42562 -11.18080 -10.92412 -10.78730 -10.75943 -10.51970 -9.15754 -8.30612 -6.35133 1.35504 1.38345 1.51364 2.36116 3.05127 3.21229 3.53574 3.60615 3.79909 3.94152 4.30317 4.40663 4.45700 4.47844 4.57907 4.61371 4.64462 4.78218 4.83479 4.84442 4.90454 4.95377 4.99138 5.06740 5.12562 5.17078 5.20500 5.27712 5.30812 5.33156 5.39134 5.45624 5.48965 5.62707 5.68513 5.79113 5.89335 6.22610 6.31788 6.57851 6.74193 7.29738 8.86299 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.030791 B = 0.006324 C = 0.006119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.142815 B = 4426.507671 C = 4574.585547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.076 4.076 3 C -0.147 4.147 4 C 0.066 3.934 5 H 0.038 0.962 6 N -0.660 5.660 7 C 0.090 3.910 8 C 0.000 4.000 9 C -0.533 4.533 10 H 0.028 0.972 11 C 0.005 3.995 12 N -0.952 5.952 13 Si 0.954 3.046 14 H -0.266 1.266 15 H -0.284 1.284 16 H -0.246 1.246 17 C -0.111 4.111 18 H 0.097 0.903 19 C -0.109 4.109 20 C -0.108 4.108 21 C -0.107 4.107 22 C -0.087 4.087 23 H 0.092 0.908 24 H 0.055 0.945 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.342 0.658 31 H 0.051 0.949 32 H 0.009 0.991 33 H 0.023 0.977 34 H 0.017 0.983 35 H 0.267 0.733 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.047 0.953 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.441 4.210 -18.685 22.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.077 4.077 3 C -0.204 4.204 4 C -0.045 4.045 5 H 0.056 0.944 6 N -0.293 5.293 7 C -0.039 4.039 8 C -0.038 4.038 9 C -0.572 4.572 10 H 0.047 0.953 11 C -0.191 4.191 12 N -0.592 5.592 13 Si 0.777 3.223 14 H -0.191 1.191 15 H -0.210 1.210 16 H -0.170 1.170 17 C -0.130 4.130 18 H 0.115 0.885 19 C -0.146 4.146 20 C -0.146 4.146 21 C -0.144 4.144 22 C -0.105 4.105 23 H 0.110 0.890 24 H 0.074 0.926 25 H 0.092 0.908 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.068 0.932 30 H 0.164 0.836 31 H 0.069 0.931 32 H 0.028 0.972 33 H 0.041 0.959 34 H 0.035 0.965 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.999 3.695 -18.883 22.163 hybrid contribution 0.189 0.455 1.240 1.334 sum -10.810 4.150 -17.643 21.104 Atomic orbital electron populations 1.21539 0.92020 1.02023 1.02511 1.21912 0.95965 0.94381 0.95430 1.21829 1.01570 0.95104 1.01897 1.22714 0.88651 0.97711 0.95400 0.94420 1.60560 1.25306 1.16477 1.26961 1.21642 0.95826 0.98594 0.87802 1.19393 0.94384 0.95891 0.94133 1.21414 1.00743 1.32126 1.02917 0.95317 1.26007 1.00513 0.97076 0.95550 1.70069 1.23713 1.47514 1.17943 0.85600 0.77381 0.78962 0.80342 1.19062 1.21017 1.16984 1.23425 0.97572 0.95195 0.96817 0.88518 1.21873 0.95854 0.97640 0.99280 1.22243 0.98588 0.96278 0.97488 1.22509 0.93666 0.96987 1.01286 1.23264 0.96266 0.95032 0.95957 0.88977 0.92577 0.90798 0.92415 0.91524 0.91008 0.93198 0.83625 0.93094 0.97235 0.95862 0.96464 0.92458 0.92914 0.93240 0.93397 0.91708 0.91671 0.89802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.12 9.08 71.98 0.65 -1.46 16 2 C -0.08 -1.59 1.30 -51.79 -0.07 -1.66 16 3 C -0.15 -2.90 7.76 71.98 0.56 -2.34 16 4 C 0.07 1.79 3.53 45.40 0.16 1.95 16 5 H 0.04 1.12 7.84 -2.38 -0.02 1.11 16 6 N -0.66 -21.05 3.09 -489.06 -1.51 -22.57 16 7 C 0.09 3.68 4.99 86.30 0.43 4.11 16 8 C 0.00 -0.01 4.30 29.85 0.13 0.12 16 9 C -0.53 -31.56 9.66 25.60 0.25 -31.31 16 10 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 11 C 0.01 0.31 5.47 84.66 0.46 0.78 16 12 N -0.95 -60.74 13.96 21.45 0.30 -60.45 16 13 Si 0.95 45.09 27.47 68.60 1.88 46.98 16 14 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 15 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 16 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 17 C -0.11 -2.75 4.51 -9.52 -0.04 -2.80 16 18 H 0.10 2.18 7.99 -2.39 -0.02 2.16 16 19 C -0.11 -3.06 6.05 31.32 0.19 -2.87 16 20 C -0.11 -2.74 6.84 31.80 0.22 -2.52 16 21 C -0.11 -2.46 5.45 31.96 0.17 -2.29 16 22 C -0.09 -1.82 4.37 -9.36 -0.04 -1.86 16 23 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 25 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.06 0.98 7.63 -2.39 -0.02 0.96 16 27 H 0.07 1.42 4.63 -2.39 -0.01 1.41 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.34 10.30 6.06 -89.69 -0.54 9.76 16 31 H 0.05 2.20 7.16 -2.39 -0.02 2.18 16 32 H 0.01 0.40 8.13 -2.39 -0.02 0.38 16 33 H 0.02 1.12 7.20 -2.39 -0.02 1.10 16 34 H 0.02 0.79 7.57 -2.39 -0.02 0.77 16 35 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 36 H 0.05 1.83 5.64 -2.38 -0.01 1.81 16 37 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.08 2.17 4.11 -2.39 -0.01 2.16 16 Total: -1.00 -64.60 302.11 4.13 -60.47 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.39 Total: 17.71 kcal Atomic # 6 Polarization: -45.22 SS G_CDS: 3.07 Total: -42.15 kcal Atomic # 7 Polarization: -81.80 SS G_CDS: -1.21 Total: -83.01 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.88 Total: 46.98 kcal Total: -64.60 4.13 -60.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595031969.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.407 kcal (2) G-P(sol) polarization free energy of solvation -64.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds