Wall clock time and date at job start Sun Mar 29 2020 22:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.50692 * 120.00221 * 2 1 4 4 C 1.31001 * 119.99537 * 180.02562 * 2 1 3 5 5 C 1.50702 * 119.99843 * 356.61554 * 4 2 1 6 6 C 1.52998 * 109.46909 * 119.44492 * 5 4 2 7 7 N 1.46499 * 109.47249 * 179.97438 * 6 5 4 8 8 C 1.36933 * 120.00159 * 270.00149 * 7 6 5 9 9 H 1.08001 * 120.00320 * 145.26119 * 8 7 6 10 10 C 1.38821 * 119.99979 * 325.25659 * 8 7 6 11 11 N 1.31622 * 119.99595 * 339.83667 * 10 8 7 12 12 Si 1.86792 * 120.00185 * 159.83351 * 10 8 7 13 13 H 1.48504 * 109.47288 * 89.99874 * 12 10 8 14 14 H 1.48500 * 109.47197 * 210.00270 * 12 10 8 15 15 H 1.48508 * 109.47110 * 330.00215 * 12 10 8 16 16 C 1.46498 * 119.99958 * 89.99673 * 7 6 5 17 17 C 1.54271 * 110.03313 * 241.40858 * 16 7 6 18 18 C 1.54969 * 104.16132 * 217.13619 * 17 16 7 19 19 C 1.54897 * 102.77584 * 37.88672 * 18 17 16 20 20 C 1.53876 * 110.03446 * 124.19290 * 16 7 6 21 21 H 1.09002 * 109.46938 * 264.43805 * 1 2 3 22 22 H 1.09006 * 109.46893 * 24.43522 * 1 2 3 23 23 H 1.08998 * 109.47401 * 144.43528 * 1 2 3 24 24 H 1.08998 * 109.47202 * 270.00180 * 3 2 1 25 25 H 1.09002 * 109.47037 * 30.00144 * 3 2 1 26 26 H 1.09000 * 109.47097 * 150.00170 * 3 2 1 27 27 H 1.07997 * 119.99765 * 176.61399 * 4 2 1 28 28 H 1.08993 * 109.47600 * 359.44102 * 5 4 2 29 29 H 1.08998 * 109.46624 * 239.43846 * 5 4 2 30 30 H 1.09002 * 109.47540 * 59.99458 * 6 5 4 31 31 H 1.08997 * 109.47373 * 299.99478 * 6 5 4 32 32 H 0.96999 * 119.99624 * 175.03671 * 11 10 8 33 33 H 1.09001 * 110.01793 * 2.79784 * 16 7 6 34 34 H 1.08998 * 110.48435 * 335.78430 * 17 16 7 35 35 H 1.08998 * 110.48383 * 98.42884 * 17 16 7 36 36 H 1.09001 * 110.72141 * 279.57790 * 18 17 16 37 37 H 1.08994 * 110.92207 * 156.29440 * 18 17 16 38 38 H 1.09000 * 110.48797 * 203.40538 * 19 18 17 39 39 H 1.08998 * 110.59446 * 80.81791 * 19 18 17 40 40 H 1.09000 * 110.03523 * 238.57322 * 20 16 7 41 41 H 1.09006 * 110.03045 * 359.97438 * 20 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1620 -1.1346 -0.0005 5 6 1.4103 -2.4385 0.0760 6 6 1.7053 -3.2711 -1.1732 7 7 0.9751 -4.5390 -1.0987 8 6 1.5574 -5.6311 -0.5128 9 1 0.9530 -6.3314 0.0447 10 6 2.9246 -5.8382 -0.6355 11 7 3.5947 -5.2513 -1.6045 12 14 3.8131 -6.9496 0.5747 13 1 3.8074 -8.3436 0.0628 14 1 5.2151 -6.4867 0.7344 15 1 3.1233 -6.9020 1.8889 16 6 -0.3782 -4.6384 -1.6509 17 6 -1.3801 -4.9951 -0.5334 18 6 -2.3889 -5.9508 -1.2194 19 6 -1.4837 -6.7895 -2.1557 20 6 -0.4443 -5.7786 -2.6822 21 1 -0.3633 -0.0996 1.0229 22 1 -0.3633 0.9357 -0.4251 23 1 -0.3634 -0.8359 -0.5977 24 1 2.4422 1.6197 -1.0276 25 1 1.6715 2.0647 0.5139 26 1 3.2130 1.1746 0.5138 27 1 3.2405 -1.1354 -0.0557 28 1 0.3405 -2.2383 0.1350 29 1 1.7265 -2.9886 0.9622 30 1 2.7751 -3.4713 -1.2323 31 1 1.3892 -2.7211 -2.0596 32 1 4.5598 -5.3376 -1.6480 33 1 -0.6607 -3.6952 -2.1185 34 1 -0.8720 -5.5019 0.2870 35 1 -1.8861 -4.0989 -0.1745 36 1 -3.1234 -5.3877 -1.7950 37 1 -2.8817 -6.5885 -0.4856 38 1 -2.0657 -7.2024 -2.9796 39 1 -0.9920 -7.5877 -1.5996 40 1 -0.7595 -5.3888 -3.6501 41 1 0.5307 -6.2576 -2.7721 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595328668.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:13 Heat of formation + Delta-G solvation = 9.290231 kcal Electronic energy + Delta-G solvation = -17646.995683 eV Core-core repulsion = 15140.747763 eV Total energy + Delta-G solvation = -2506.247919 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -37.80375 -36.47711 -34.24438 -31.30668 -29.94083 -27.79907 -27.50191 -26.57456 -25.57327 -23.10276 -20.65323 -19.89695 -18.98198 -17.32541 -16.18034 -15.34889 -14.83110 -14.56247 -14.18239 -13.82854 -13.66852 -13.13451 -12.83557 -12.52647 -12.21356 -11.91139 -11.81799 -11.56866 -11.25241 -11.07462 -10.79962 -10.65326 -10.46675 -10.46170 -10.36487 -10.19888 -10.10774 -10.04006 -9.60000 -9.45411 -9.35169 -8.41012 -8.13157 -6.51632 -5.65491 -3.28323 2.71679 3.38924 3.46918 3.49762 4.53847 5.22235 5.32559 5.34825 5.43928 5.47037 5.56016 5.74208 5.77237 5.83478 5.92728 6.02387 6.09779 6.19410 6.24258 6.27643 6.32221 6.35834 6.45383 6.52762 6.57198 6.62554 6.65832 6.79864 6.87274 6.91465 7.06033 7.12545 7.22375 7.27457 7.42830 7.56952 7.84623 7.93646 8.59078 9.28057 9.92241 10.47861 11.28224 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.015796 B = 0.009365 C = 0.006498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.199525 B = 2989.160167 C = 4308.001592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.174 4.174 3 C -0.108 4.108 4 C -0.129 4.129 5 C -0.115 4.115 6 C 0.146 3.854 7 N -0.579 5.579 8 C -0.240 4.240 9 H 0.061 0.939 10 C 0.005 3.995 11 N -0.888 5.888 12 Si 0.891 3.109 13 H -0.288 1.288 14 H -0.290 1.290 15 H -0.280 1.280 16 C 0.170 3.830 17 C -0.135 4.135 18 C -0.123 4.123 19 C -0.117 4.117 20 C -0.132 4.132 21 H 0.057 0.943 22 H 0.050 0.950 23 H 0.067 0.933 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.101 0.899 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.018 0.982 32 H 0.252 0.748 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.045 0.955 36 H 0.054 0.946 37 H 0.051 0.949 38 H 0.046 0.954 39 H 0.061 0.939 40 H 0.039 0.961 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.639 6.323 1.319 9.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.174 4.174 3 C -0.165 4.165 4 C -0.148 4.148 5 C -0.154 4.154 6 C 0.020 3.980 7 N -0.297 5.297 8 C -0.369 4.369 9 H 0.079 0.921 10 C -0.194 4.194 11 N -0.532 5.532 12 Si 0.720 3.280 13 H -0.215 1.215 14 H -0.217 1.217 15 H -0.205 1.205 16 C 0.063 3.937 17 C -0.174 4.174 18 C -0.161 4.161 19 C -0.155 4.155 20 C -0.172 4.172 21 H 0.075 0.925 22 H 0.069 0.931 23 H 0.086 0.914 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.119 0.881 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.120 0.880 31 H 0.037 0.963 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.058 0.942 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.457 6.260 1.215 9.075 hybrid contribution 0.603 -0.517 0.649 1.025 sum -5.855 5.743 1.864 8.410 Atomic orbital electron populations 1.20759 0.92931 1.01539 1.01391 1.21416 0.95519 0.94715 1.05744 1.20718 0.99256 0.95282 1.01222 1.22887 0.99369 0.94543 0.97987 1.21470 0.98289 0.93106 1.02568 1.20983 1.01741 0.84033 0.91268 1.44006 1.12081 1.07227 1.66434 1.18949 0.91115 1.02516 1.24362 0.92117 1.25051 0.98407 0.98968 0.96960 1.70001 1.06911 1.46989 1.29290 0.86499 0.79111 0.80663 0.81704 1.21459 1.21658 1.20543 1.21035 0.86411 0.95124 0.91170 1.22861 0.96608 0.97808 1.00173 1.22442 0.97375 0.98033 0.98247 1.22253 0.96990 0.98268 0.98020 1.22572 0.99960 0.97261 0.97367 0.92455 0.93091 0.91374 0.92358 0.92712 0.92512 0.88074 0.92809 0.91544 0.87997 0.96323 0.93824 0.93564 0.90832 0.93603 0.92746 0.92980 0.93480 0.92031 0.94172 0.89783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 9.04 36.01 0.33 -1.23 16 2 C -0.17 -2.70 6.05 -101.07 -0.61 -3.31 16 3 C -0.11 -1.38 10.00 36.00 0.36 -1.02 16 4 C -0.13 -2.30 9.10 -36.03 -0.33 -2.63 16 5 C -0.12 -2.32 5.69 -27.88 -0.16 -2.48 16 6 C 0.15 3.40 5.26 -4.04 -0.02 3.38 16 7 N -0.58 -13.93 2.40 -164.39 -0.40 -14.33 16 8 C -0.24 -6.30 7.84 -15.06 -0.12 -6.42 16 9 H 0.06 1.61 6.89 -52.49 -0.36 1.25 16 10 C 0.01 0.14 5.02 -17.43 -0.09 0.05 16 11 N -0.89 -25.11 11.18 55.49 0.62 -24.49 16 12 Si 0.89 21.47 29.60 -169.99 -5.03 16.43 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 16 C 0.17 3.56 3.42 -66.81 -0.23 3.33 16 17 C -0.13 -2.52 6.42 -25.03 -0.16 -2.68 16 18 C -0.12 -1.99 6.91 -24.69 -0.17 -2.16 16 19 C -0.12 -2.05 6.83 -25.07 -0.17 -2.22 16 20 C -0.13 -2.68 6.25 -25.61 -0.16 -2.84 16 21 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.05 0.62 8.09 -51.93 -0.42 0.20 16 23 H 0.07 1.04 6.46 -51.93 -0.34 0.71 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.61 8.12 -51.93 -0.42 0.19 16 26 H 0.06 0.70 8.06 -51.93 -0.42 0.28 16 27 H 0.10 1.80 8.05 -52.49 -0.42 1.38 16 28 H 0.05 1.04 5.52 -51.93 -0.29 0.75 16 29 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.10 2.70 5.25 -51.93 -0.27 2.43 16 31 H 0.02 0.42 7.91 -51.93 -0.41 0.01 16 32 H 0.25 6.93 8.32 -40.82 -0.34 6.59 16 33 H 0.05 0.94 7.81 -51.93 -0.41 0.53 16 34 H 0.07 1.52 6.58 -51.93 -0.34 1.18 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 2.02 7.21 -51.93 -0.37 1.64 16 LS Contribution 319.90 15.07 4.82 4.82 Total: -1.00 -27.12 319.90 -8.93 -36.05 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -7.41 Total: 1.74 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: -1.53 Total: -20.22 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.23 Total: -38.82 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.12 -8.93 -36.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595328668.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.335 kcal (2) G-P(sol) polarization free energy of solvation -27.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds