Wall clock time and date at job start Sun Mar 29 2020 22:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.50692 * 120.00221 * 2 1 4 4 C 1.31001 * 119.99537 * 180.02562 * 2 1 3 5 5 C 1.50702 * 119.99843 * 356.61554 * 4 2 1 6 6 C 1.52998 * 109.46909 * 119.44492 * 5 4 2 7 7 N 1.46499 * 109.47249 * 179.97438 * 6 5 4 8 8 C 1.36933 * 120.00159 * 270.00149 * 7 6 5 9 9 H 1.08001 * 120.00320 * 145.26119 * 8 7 6 10 10 C 1.38821 * 119.99979 * 325.25659 * 8 7 6 11 11 N 1.31622 * 119.99595 * 339.83667 * 10 8 7 12 12 Si 1.86792 * 120.00185 * 159.83351 * 10 8 7 13 13 H 1.48504 * 109.47288 * 89.99874 * 12 10 8 14 14 H 1.48500 * 109.47197 * 210.00270 * 12 10 8 15 15 H 1.48508 * 109.47110 * 330.00215 * 12 10 8 16 16 C 1.46498 * 119.99958 * 89.99673 * 7 6 5 17 17 C 1.54271 * 110.03313 * 241.40858 * 16 7 6 18 18 C 1.54969 * 104.16132 * 217.13619 * 17 16 7 19 19 C 1.54897 * 102.77584 * 37.88672 * 18 17 16 20 20 C 1.53876 * 110.03446 * 124.19290 * 16 7 6 21 21 H 1.09002 * 109.46938 * 264.43805 * 1 2 3 22 22 H 1.09006 * 109.46893 * 24.43522 * 1 2 3 23 23 H 1.08998 * 109.47401 * 144.43528 * 1 2 3 24 24 H 1.08998 * 109.47202 * 270.00180 * 3 2 1 25 25 H 1.09002 * 109.47037 * 30.00144 * 3 2 1 26 26 H 1.09000 * 109.47097 * 150.00170 * 3 2 1 27 27 H 1.07997 * 119.99765 * 176.61399 * 4 2 1 28 28 H 1.08993 * 109.47600 * 359.44102 * 5 4 2 29 29 H 1.08998 * 109.46624 * 239.43846 * 5 4 2 30 30 H 1.09002 * 109.47540 * 59.99458 * 6 5 4 31 31 H 1.08997 * 109.47373 * 299.99478 * 6 5 4 32 32 H 0.96999 * 119.99624 * 175.03671 * 11 10 8 33 33 H 1.09001 * 110.01793 * 2.79784 * 16 7 6 34 34 H 1.08998 * 110.48435 * 335.78430 * 17 16 7 35 35 H 1.08998 * 110.48383 * 98.42884 * 17 16 7 36 36 H 1.09001 * 110.72141 * 279.57790 * 18 17 16 37 37 H 1.08994 * 110.92207 * 156.29440 * 18 17 16 38 38 H 1.09000 * 110.48797 * 203.40538 * 19 18 17 39 39 H 1.08998 * 110.59446 * 80.81791 * 19 18 17 40 40 H 1.09000 * 110.03523 * 238.57322 * 20 16 7 41 41 H 1.09006 * 110.03045 * 359.97438 * 20 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1620 -1.1346 -0.0005 5 6 1.4103 -2.4385 0.0760 6 6 1.7053 -3.2711 -1.1732 7 7 0.9751 -4.5390 -1.0987 8 6 1.5574 -5.6311 -0.5128 9 1 0.9530 -6.3314 0.0447 10 6 2.9246 -5.8382 -0.6355 11 7 3.5947 -5.2513 -1.6045 12 14 3.8131 -6.9496 0.5747 13 1 3.8074 -8.3436 0.0628 14 1 5.2151 -6.4867 0.7344 15 1 3.1233 -6.9020 1.8889 16 6 -0.3782 -4.6384 -1.6509 17 6 -1.3801 -4.9951 -0.5334 18 6 -2.3889 -5.9508 -1.2194 19 6 -1.4837 -6.7895 -2.1557 20 6 -0.4443 -5.7786 -2.6822 21 1 -0.3633 -0.0996 1.0229 22 1 -0.3633 0.9357 -0.4251 23 1 -0.3634 -0.8359 -0.5977 24 1 2.4422 1.6197 -1.0276 25 1 1.6715 2.0647 0.5139 26 1 3.2130 1.1746 0.5138 27 1 3.2405 -1.1354 -0.0557 28 1 0.3405 -2.2383 0.1350 29 1 1.7265 -2.9886 0.9622 30 1 2.7751 -3.4713 -1.2323 31 1 1.3892 -2.7211 -2.0596 32 1 4.5598 -5.3376 -1.6480 33 1 -0.6607 -3.6952 -2.1185 34 1 -0.8720 -5.5019 0.2870 35 1 -1.8861 -4.0989 -0.1745 36 1 -3.1234 -5.3877 -1.7950 37 1 -2.8817 -6.5885 -0.4856 38 1 -2.0657 -7.2024 -2.9796 39 1 -0.9920 -7.5877 -1.5996 40 1 -0.7595 -5.3888 -3.6501 41 1 0.5307 -6.2576 -2.7721 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595328668.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:12 Heat of formation + Delta-G solvation = -2.630358 kcal Electronic energy + Delta-G solvation = -17647.512598 eV Core-core repulsion = 15140.747763 eV Total energy + Delta-G solvation = -2506.764835 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.45118 -37.84474 -35.96032 -33.20834 -31.51604 -29.31980 -28.62817 -28.19748 -27.28305 -24.78646 -22.39926 -21.32078 -20.73199 -18.68420 -18.06370 -17.09352 -16.48253 -16.18786 -15.75516 -15.29274 -14.94261 -14.64263 -14.47724 -14.05365 -13.59798 -13.49444 -13.17995 -13.01200 -12.79678 -12.68251 -12.52109 -12.41986 -12.12570 -12.04291 -11.81425 -11.76124 -11.72096 -11.55593 -11.23712 -11.17604 -11.11199 -10.42617 -9.50056 -8.50338 -7.68287 -5.35271 1.37247 1.44485 1.46828 1.55060 2.54610 3.30582 3.64965 3.99604 4.03838 4.07399 4.20998 4.33911 4.48533 4.61203 4.69388 4.73293 4.77312 4.82894 4.88892 4.93159 4.95748 4.97151 4.99701 5.11391 5.12656 5.17545 5.22970 5.25414 5.27923 5.34693 5.44503 5.59813 5.62988 5.68503 5.78821 5.88617 6.00808 6.17652 6.54667 7.25185 7.98251 8.47372 9.20669 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.015796 B = 0.009365 C = 0.006498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.199525 B = 2989.160167 C = 4308.001592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.146 4.146 3 C -0.110 4.110 4 C -0.169 4.169 5 C -0.094 4.094 6 C 0.149 3.851 7 N -0.592 5.592 8 C -0.233 4.233 9 H 0.056 0.944 10 C -0.045 4.045 11 N -0.918 5.918 12 Si 0.945 3.055 13 H -0.287 1.287 14 H -0.294 1.294 15 H -0.275 1.275 16 C 0.160 3.840 17 C -0.129 4.129 18 C -0.111 4.111 19 C -0.113 4.113 20 C -0.130 4.130 21 H 0.068 0.932 22 H 0.076 0.924 23 H 0.054 0.946 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.058 0.942 27 H 0.093 0.907 28 H 0.064 0.936 29 H 0.039 0.961 30 H 0.070 0.930 31 H 0.015 0.985 32 H 0.246 0.754 33 H 0.052 0.948 34 H 0.047 0.953 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.045 0.955 40 H 0.054 0.946 41 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.844 7.541 1.789 11.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.146 4.146 3 C -0.167 4.167 4 C -0.188 4.188 5 C -0.133 4.133 6 C 0.023 3.977 7 N -0.312 5.312 8 C -0.364 4.364 9 H 0.073 0.927 10 C -0.241 4.241 11 N -0.564 5.564 12 Si 0.774 3.226 13 H -0.214 1.214 14 H -0.220 1.220 15 H -0.200 1.200 16 C 0.053 3.947 17 C -0.168 4.168 18 C -0.149 4.149 19 C -0.151 4.151 20 C -0.170 4.170 21 H 0.087 0.913 22 H 0.095 0.905 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.097 0.903 26 H 0.077 0.923 27 H 0.111 0.889 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.033 0.967 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -8.687 7.479 1.695 11.588 hybrid contribution 1.213 -0.795 0.451 1.519 sum -7.474 6.684 2.146 10.254 Atomic orbital electron populations 1.20833 0.91677 1.02413 1.02064 1.21865 0.96630 0.95097 1.00997 1.20804 0.99435 0.94111 1.02340 1.22655 0.99007 0.94339 1.02809 1.21124 0.99091 0.93561 0.99503 1.20849 0.99778 0.84332 0.92753 1.44202 1.13214 1.06976 1.66788 1.19068 0.91226 1.02556 1.23522 0.92673 1.25655 0.99212 1.00713 0.98488 1.70136 1.06551 1.48923 1.30813 0.85633 0.77816 0.79047 0.80109 1.21404 1.22050 1.19991 1.21289 0.85331 0.95764 0.92279 1.22736 0.96533 0.98975 0.98563 1.22408 0.96772 0.97465 0.98217 1.22218 0.96560 0.97282 0.99033 1.22488 0.98604 0.97654 0.98230 0.91336 0.90471 0.92691 0.91218 0.90326 0.92272 0.88916 0.91724 0.94257 0.91281 0.96692 0.94444 0.92929 0.93375 0.91956 0.90268 0.91096 0.90775 0.93619 0.92730 0.94397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.89 9.04 71.24 0.64 -2.25 16 2 C -0.15 -4.25 6.05 -16.49 -0.10 -4.35 16 3 C -0.11 -2.51 10.00 71.23 0.71 -1.79 16 4 C -0.17 -6.07 9.10 25.65 0.23 -5.84 16 5 C -0.09 -3.86 5.69 29.85 0.17 -3.69 16 6 C 0.15 7.21 5.26 86.38 0.45 7.67 16 7 N -0.59 -29.32 2.40 -674.01 -1.62 -30.94 16 8 C -0.23 -12.65 7.84 84.04 0.66 -11.99 16 9 H 0.06 3.01 6.89 -2.91 -0.02 2.99 16 10 C -0.04 -2.51 5.02 84.86 0.43 -2.08 16 11 N -0.92 -54.28 11.18 21.65 0.24 -54.03 16 12 Si 0.94 45.50 29.60 68.60 2.03 47.53 16 13 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 14 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 15 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 16 C 0.16 6.65 3.42 45.72 0.16 6.81 16 17 C -0.13 -4.60 6.42 31.70 0.20 -4.40 16 18 C -0.11 -3.22 6.91 31.92 0.22 -3.00 16 19 C -0.11 -3.74 6.83 31.67 0.22 -3.53 16 20 C -0.13 -5.27 6.25 31.32 0.20 -5.07 16 21 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 22 H 0.08 1.59 8.09 -2.38 -0.02 1.57 16 23 H 0.05 1.57 6.46 -2.39 -0.02 1.55 16 24 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.08 1.45 8.12 -2.39 -0.02 1.43 16 26 H 0.06 1.33 8.06 -2.39 -0.02 1.31 16 27 H 0.09 3.43 8.05 -2.91 -0.02 3.40 16 28 H 0.06 2.47 5.52 -2.39 -0.01 2.46 16 29 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.07 3.87 5.25 -2.39 -0.01 3.86 16 31 H 0.01 0.70 7.91 -2.39 -0.02 0.68 16 32 H 0.25 14.19 8.32 -92.71 -0.77 13.42 16 33 H 0.05 2.09 7.81 -2.39 -0.02 2.07 16 34 H 0.05 1.96 6.58 -2.39 -0.02 1.95 16 35 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.04 1.87 7.21 -2.38 -0.02 1.85 16 Total: -1.00 -60.60 319.90 5.80 -54.79 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 0.96 Total: 16.17 kcal Atomic # 6 Polarization: -37.71 SS G_CDS: 4.19 Total: -33.52 kcal Atomic # 7 Polarization: -83.60 SS G_CDS: -1.38 Total: -84.98 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -60.60 5.80 -54.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595328668.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.161 kcal (2) G-P(sol) polarization free energy of solvation -60.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds