Wall clock time and date at job start Sun Mar 29 2020 22:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.50699 * 119.99562 * 2 1 4 4 C 1.30990 * 120.00018 * 179.97438 * 2 1 3 5 5 C 1.50699 * 120.00419 * 0.02562 * 4 2 1 6 6 C 1.53003 * 109.47584 * 124.99777 * 5 4 2 7 7 N 1.46892 * 109.47501 * 180.02562 * 6 5 4 8 8 C 1.46897 * 111.00054 * 190.00025 * 7 6 5 9 9 C 1.50700 * 109.46969 * 71.31029 * 8 7 6 10 10 H 1.08001 * 120.00056 * 355.26561 * 9 8 7 11 11 C 1.37884 * 120.00140 * 175.27240 * 9 8 7 12 12 N 1.31514 * 119.99705 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00003 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47328 * 59.99779 * 13 11 9 15 15 H 1.48502 * 109.46989 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47200 * 299.99590 * 13 11 9 17 17 C 1.46901 * 110.99804 * 66.04945 * 7 6 5 18 18 C 1.52998 * 109.47148 * 191.44869 * 17 7 6 19 19 C 1.52999 * 117.49869 * 243.12878 * 18 17 7 20 20 C 1.52995 * 60.00091 * 252.50524 * 19 18 17 21 21 H 1.08999 * 109.47028 * 239.99970 * 1 2 3 22 22 H 1.08992 * 109.47205 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46569 * 120.00257 * 1 2 3 24 24 H 1.08999 * 109.46913 * 269.99606 * 3 2 1 25 25 H 1.09002 * 109.47532 * 30.00033 * 3 2 1 26 26 H 1.08995 * 109.47024 * 149.99864 * 3 2 1 27 27 H 1.07998 * 119.99899 * 179.97438 * 4 2 1 28 28 H 1.09010 * 109.46922 * 4.99969 * 5 4 2 29 29 H 1.09003 * 109.47301 * 245.00289 * 5 4 2 30 30 H 1.09007 * 109.46341 * 60.00055 * 6 5 4 31 31 H 1.09001 * 109.46709 * 300.00614 * 6 5 4 32 32 H 1.09003 * 109.47214 * 191.30468 * 8 7 6 33 33 H 1.08995 * 109.47432 * 311.30557 * 8 7 6 34 34 H 0.97002 * 120.00312 * 180.02562 * 12 11 9 35 35 H 1.09003 * 109.46991 * 311.44235 * 17 7 6 36 36 H 1.09000 * 109.47455 * 71.44923 * 17 7 6 37 37 H 1.09005 * 115.55359 * 28.83861 * 18 17 7 38 38 H 1.09000 * 117.50155 * 0.02562 * 19 18 17 39 39 H 1.09007 * 117.49525 * 145.01713 * 19 18 17 40 40 H 1.08996 * 117.50380 * 252.50578 * 20 19 18 41 41 H 1.09000 * 117.49449 * 107.48959 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1344 0.0005 5 6 1.4086 -2.4396 0.0005 6 6 1.8706 -3.2952 -1.1808 7 7 1.1358 -4.5672 -1.1811 8 6 1.7127 -5.5082 -2.1504 9 6 3.0460 -5.9956 -1.6448 10 1 3.4622 -5.5849 -0.7367 11 6 3.7348 -6.9658 -2.3416 12 7 3.2279 -7.4661 -3.4472 13 14 5.3878 -7.5694 -1.7153 14 1 5.2209 -8.1518 -0.3596 15 1 5.9184 -8.6053 -2.6377 16 1 6.3388 -6.4306 -1.6512 17 6 -0.2929 -4.3496 -1.4448 18 6 -1.0664 -5.6382 -1.1583 19 6 -1.7881 -6.3046 -2.3314 20 6 -2.5926 -5.5813 -1.2495 21 1 -0.3633 -0.5138 0.8900 22 1 -0.3633 1.0276 -0.0005 23 1 -0.3632 -0.5139 -0.8900 24 1 2.4422 1.6197 -1.0277 25 1 1.6714 2.0648 0.5138 26 1 3.2128 1.1749 0.5138 27 1 3.2420 -1.1344 0.0001 28 1 0.3403 -2.2424 -0.0895 29 1 1.6027 -2.9712 0.9321 30 1 2.9389 -3.4923 -1.0907 31 1 1.6765 -2.7636 -2.1123 32 1 1.0402 -6.3565 -2.2777 33 1 1.8488 -5.0056 -3.1080 34 1 3.7122 -8.1489 -3.9373 35 1 -0.6640 -3.5524 -0.8007 36 1 -0.4309 -4.0675 -2.4886 37 1 -0.6315 -6.2888 -0.3994 38 1 -1.7115 -5.8252 -3.3073 39 1 -1.8279 -7.3939 -2.3445 40 1 -3.1618 -6.1946 -0.5510 41 1 -3.0457 -4.6258 -1.5136 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595335060.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:48 Heat of formation + Delta-G solvation = 24.622521 kcal Electronic energy + Delta-G solvation = -16980.494557 eV Core-core repulsion = 14474.911495 eV Total energy + Delta-G solvation = -2505.583061 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.04599 -36.76732 -35.21354 -32.56344 -30.68924 -27.79819 -27.58288 -26.28272 -24.24742 -22.11762 -21.77392 -20.57731 -19.40327 -17.69640 -16.35668 -15.45367 -15.08269 -14.76927 -14.32715 -14.06822 -13.92083 -13.56523 -13.19226 -12.65226 -12.47593 -12.32866 -11.97013 -11.81289 -11.63616 -11.43293 -11.17194 -11.09011 -10.78399 -10.68600 -10.65012 -10.44239 -10.16697 -9.86327 -9.82292 -9.27003 -9.08493 -8.48170 -8.34811 -7.18574 -5.96880 -3.97522 2.36987 3.36273 3.40136 3.43284 4.24709 4.46736 4.80274 5.01804 5.06399 5.30014 5.36117 5.38649 5.47111 5.53780 5.55592 5.61919 5.73634 5.79734 5.92267 5.93875 5.97487 5.99498 6.04547 6.09015 6.15030 6.27385 6.29808 6.36518 6.49608 6.60675 6.78738 6.82621 6.91268 7.13881 7.38889 7.43921 7.86858 8.18934 8.30116 8.62581 9.09851 9.65887 11.13806 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.014917 B = 0.007250 C = 0.005094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.571016 B = 3860.905406 C = 5495.713396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.155 4.155 3 C -0.112 4.112 4 C -0.145 4.145 5 C -0.094 4.094 6 C 0.070 3.930 7 N -0.534 5.534 8 C 0.193 3.807 9 C -0.504 4.504 10 H 0.061 0.939 11 C 0.055 3.945 12 N -0.899 5.899 13 Si 0.896 3.104 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.278 1.278 17 C 0.084 3.916 18 C -0.129 4.129 19 C -0.179 4.179 20 C -0.190 4.190 21 H 0.063 0.937 22 H 0.054 0.946 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.107 0.893 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.017 0.983 32 H 0.041 0.959 33 H -0.016 1.016 34 H 0.260 0.740 35 H 0.064 0.936 36 H 0.021 0.979 37 H 0.112 0.888 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.193 11.487 5.353 14.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.155 4.155 3 C -0.169 4.169 4 C -0.164 4.164 5 C -0.132 4.132 6 C -0.058 4.058 7 N -0.259 5.259 8 C 0.068 3.932 9 C -0.543 4.543 10 H 0.079 0.921 11 C -0.146 4.146 12 N -0.539 5.539 13 Si 0.724 3.276 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.204 1.204 17 C -0.044 4.044 18 C -0.147 4.147 19 C -0.216 4.216 20 C -0.227 4.227 21 H 0.082 0.918 22 H 0.073 0.927 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.125 0.875 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.035 0.965 32 H 0.059 0.941 33 H 0.002 0.998 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.039 0.961 37 H 0.130 0.870 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.103 11.137 5.662 14.372 hybrid contribution 0.907 -0.127 -0.670 1.134 sum -6.197 11.010 4.993 13.585 Atomic orbital electron populations 1.20780 0.92709 1.01473 1.01945 1.21513 0.95644 0.94891 1.03498 1.20787 0.99465 0.95015 1.01607 1.22759 0.99577 0.94008 1.00020 1.20857 0.99105 0.93057 1.00162 1.21870 0.99973 0.89240 0.94701 1.62123 0.99941 1.10580 1.53222 1.19742 0.95095 0.90433 0.87948 1.21152 1.03154 1.20890 1.09115 0.92067 1.24971 0.98084 0.96494 0.95040 1.69952 1.38740 1.28807 1.16400 0.86603 0.83987 0.78411 0.78638 1.20214 1.21426 1.20376 1.21625 0.90350 0.94807 0.97633 1.22261 0.91697 0.99724 1.01060 1.22959 1.04786 0.99599 0.94232 1.22932 0.94678 1.02019 1.03114 0.91774 0.92734 0.91781 0.91953 0.92401 0.92198 0.87519 0.91621 0.90508 0.89961 0.96527 0.94135 0.99820 0.92994 0.91765 0.96136 0.87042 0.89311 0.89160 0.89369 0.89551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 8.53 36.01 0.31 -0.95 16 2 C -0.16 -1.94 6.05 -101.06 -0.61 -2.55 16 3 C -0.11 -1.16 9.97 36.01 0.36 -0.80 16 4 C -0.15 -2.05 9.11 -36.02 -0.33 -2.38 16 5 C -0.09 -1.49 5.41 -27.88 -0.15 -1.64 16 6 C 0.07 1.38 4.78 -3.83 -0.02 1.36 16 7 N -0.53 -11.57 4.45 -236.07 -1.05 -12.62 16 8 C 0.19 5.06 4.60 -4.98 -0.02 5.04 16 9 C -0.50 -14.29 8.52 -34.44 -0.29 -14.58 16 10 H 0.06 1.72 7.37 -52.49 -0.39 1.33 16 11 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 12 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 13 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 C 0.08 1.56 5.11 -3.82 -0.02 1.54 16 18 C -0.13 -2.27 4.73 -90.62 -0.43 -2.70 16 19 C -0.18 -2.94 10.05 -26.73 -0.27 -3.20 16 20 C -0.19 -2.69 10.25 -26.73 -0.27 -2.96 16 21 H 0.06 0.70 7.85 -51.93 -0.41 0.29 16 22 H 0.05 0.52 7.94 -51.93 -0.41 0.11 16 23 H 0.06 0.75 7.66 -51.93 -0.40 0.35 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.52 8.05 -51.93 -0.42 0.10 16 26 H 0.06 0.59 8.06 -51.93 -0.42 0.17 16 27 H 0.11 1.48 8.04 -52.49 -0.42 1.06 16 28 H 0.07 0.97 4.00 -51.92 -0.21 0.77 16 29 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.08 1.76 6.96 -51.93 -0.36 1.40 16 31 H 0.02 0.33 8.12 -51.93 -0.42 -0.09 16 32 H 0.04 1.13 6.87 -51.93 -0.36 0.78 16 33 H -0.02 -0.45 8.06 -51.93 -0.42 -0.87 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.06 1.05 6.04 -51.93 -0.31 0.74 16 36 H 0.02 0.39 7.84 -51.93 -0.41 -0.01 16 37 H 0.11 2.14 8.14 -51.93 -0.42 1.72 16 38 H 0.09 1.47 8.03 -51.93 -0.42 1.05 16 39 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 40 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 329.20 15.07 4.96 4.96 Total: -1.00 -29.44 329.20 -9.66 -39.09 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -7.44 Total: 0.28 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: -1.85 Total: -22.35 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: -0.31 Total: -38.84 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.44 -9.66 -39.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595335060.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.717 kcal (2) G-P(sol) polarization free energy of solvation -29.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds