Wall clock time and date at job start Sun Mar 29 2020 22:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.50699 * 119.99562 * 2 1 4 4 C 1.30990 * 120.00018 * 179.97438 * 2 1 3 5 5 C 1.50699 * 120.00419 * 0.02562 * 4 2 1 6 6 C 1.53003 * 109.47584 * 124.99777 * 5 4 2 7 7 N 1.46892 * 109.47501 * 180.02562 * 6 5 4 8 8 C 1.46897 * 111.00054 * 190.00025 * 7 6 5 9 9 C 1.50700 * 109.46969 * 71.31029 * 8 7 6 10 10 H 1.08001 * 120.00056 * 355.26561 * 9 8 7 11 11 C 1.37884 * 120.00140 * 175.27240 * 9 8 7 12 12 N 1.31514 * 119.99705 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00003 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47328 * 59.99779 * 13 11 9 15 15 H 1.48502 * 109.46989 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47200 * 299.99590 * 13 11 9 17 17 C 1.46901 * 110.99804 * 66.04945 * 7 6 5 18 18 C 1.52998 * 109.47148 * 191.44869 * 17 7 6 19 19 C 1.52999 * 117.49869 * 243.12878 * 18 17 7 20 20 C 1.52995 * 60.00091 * 252.50524 * 19 18 17 21 21 H 1.08999 * 109.47028 * 239.99970 * 1 2 3 22 22 H 1.08992 * 109.47205 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46569 * 120.00257 * 1 2 3 24 24 H 1.08999 * 109.46913 * 269.99606 * 3 2 1 25 25 H 1.09002 * 109.47532 * 30.00033 * 3 2 1 26 26 H 1.08995 * 109.47024 * 149.99864 * 3 2 1 27 27 H 1.07998 * 119.99899 * 179.97438 * 4 2 1 28 28 H 1.09010 * 109.46922 * 4.99969 * 5 4 2 29 29 H 1.09003 * 109.47301 * 245.00289 * 5 4 2 30 30 H 1.09007 * 109.46341 * 60.00055 * 6 5 4 31 31 H 1.09001 * 109.46709 * 300.00614 * 6 5 4 32 32 H 1.09003 * 109.47214 * 191.30468 * 8 7 6 33 33 H 1.08995 * 109.47432 * 311.30557 * 8 7 6 34 34 H 0.97002 * 120.00312 * 180.02562 * 12 11 9 35 35 H 1.09003 * 109.46991 * 311.44235 * 17 7 6 36 36 H 1.09000 * 109.47455 * 71.44923 * 17 7 6 37 37 H 1.09005 * 115.55359 * 28.83861 * 18 17 7 38 38 H 1.09000 * 117.50155 * 0.02562 * 19 18 17 39 39 H 1.09007 * 117.49525 * 145.01713 * 19 18 17 40 40 H 1.08996 * 117.50380 * 252.50578 * 20 19 18 41 41 H 1.09000 * 117.49449 * 107.48959 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1344 0.0005 5 6 1.4086 -2.4396 0.0005 6 6 1.8706 -3.2952 -1.1808 7 7 1.1358 -4.5672 -1.1811 8 6 1.7127 -5.5082 -2.1504 9 6 3.0460 -5.9956 -1.6448 10 1 3.4622 -5.5849 -0.7367 11 6 3.7348 -6.9658 -2.3416 12 7 3.2279 -7.4661 -3.4472 13 14 5.3878 -7.5694 -1.7153 14 1 5.2209 -8.1518 -0.3596 15 1 5.9184 -8.6053 -2.6377 16 1 6.3388 -6.4306 -1.6512 17 6 -0.2929 -4.3496 -1.4448 18 6 -1.0664 -5.6382 -1.1583 19 6 -1.7881 -6.3046 -2.3314 20 6 -2.5926 -5.5813 -1.2495 21 1 -0.3633 -0.5138 0.8900 22 1 -0.3633 1.0276 -0.0005 23 1 -0.3632 -0.5139 -0.8900 24 1 2.4422 1.6197 -1.0277 25 1 1.6714 2.0648 0.5138 26 1 3.2128 1.1749 0.5138 27 1 3.2420 -1.1344 0.0001 28 1 0.3403 -2.2424 -0.0895 29 1 1.6027 -2.9712 0.9321 30 1 2.9389 -3.4923 -1.0907 31 1 1.6765 -2.7636 -2.1123 32 1 1.0402 -6.3565 -2.2777 33 1 1.8488 -5.0056 -3.1080 34 1 3.7122 -8.1489 -3.9373 35 1 -0.6640 -3.5524 -0.8007 36 1 -0.4309 -4.0675 -2.4886 37 1 -0.6315 -6.2888 -0.3994 38 1 -1.7115 -5.8252 -3.3073 39 1 -1.8279 -7.3939 -2.3445 40 1 -3.1618 -6.1946 -0.5510 41 1 -3.0457 -4.6258 -1.5136 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595335060.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:48 Heat of formation + Delta-G solvation = 8.827168 kcal Electronic energy + Delta-G solvation = -16981.179495 eV Core-core repulsion = 14474.911495 eV Total energy + Delta-G solvation = -2506.267999 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.55458 -37.90937 -36.68908 -34.67418 -32.06158 -29.53888 -28.65353 -27.61815 -25.95751 -23.69384 -23.15204 -22.07622 -20.97939 -18.77495 -18.50695 -16.98052 -16.54780 -16.32922 -15.90217 -15.39161 -15.20716 -14.76507 -14.55579 -14.25667 -13.90597 -13.83304 -13.28087 -13.22633 -12.89217 -12.69317 -12.65683 -12.50644 -12.40375 -12.34907 -12.24675 -11.95306 -11.57424 -11.55879 -11.38304 -11.05603 -10.65575 -10.54324 -9.52810 -9.00221 -8.18310 -6.27907 1.31501 1.39599 1.42914 1.50769 2.40588 2.93822 3.12771 3.29604 3.90677 3.99360 4.04130 4.15963 4.20573 4.24935 4.47560 4.51675 4.58130 4.66124 4.73311 4.73761 4.78844 4.82758 4.87991 4.94698 4.98422 5.04091 5.12782 5.13720 5.15956 5.26103 5.28363 5.34140 5.40551 5.42597 5.67458 5.84225 6.08752 6.10297 6.41330 6.68649 6.87804 7.40971 8.92285 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.014917 B = 0.007250 C = 0.005094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.571016 B = 3860.905406 C = 5495.713396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.137 4.137 3 C -0.115 4.115 4 C -0.177 4.177 5 C -0.077 4.077 6 C 0.074 3.926 7 N -0.540 5.540 8 C 0.211 3.789 9 C -0.522 4.522 10 H 0.059 0.941 11 C 0.002 3.998 12 N -0.934 5.934 13 Si 0.966 3.034 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.269 1.269 17 C 0.088 3.912 18 C -0.157 4.157 19 C -0.194 4.194 20 C -0.146 4.146 21 H 0.069 0.931 22 H 0.075 0.925 23 H 0.059 0.941 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.062 0.938 27 H 0.103 0.897 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.010 0.990 32 H 0.017 0.983 33 H -0.051 1.051 34 H 0.263 0.737 35 H 0.091 0.909 36 H 0.012 0.988 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.110 0.890 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.957 12.956 6.690 16.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.137 4.137 3 C -0.171 4.171 4 C -0.195 4.195 5 C -0.114 4.114 6 C -0.054 4.054 7 N -0.264 5.264 8 C 0.085 3.915 9 C -0.561 4.561 10 H 0.077 0.923 11 C -0.196 4.196 12 N -0.574 5.574 13 Si 0.791 3.209 14 H -0.193 1.193 15 H -0.207 1.207 16 H -0.194 1.194 17 C -0.040 4.040 18 C -0.176 4.176 19 C -0.232 4.232 20 C -0.184 4.184 21 H 0.088 0.912 22 H 0.094 0.906 23 H 0.078 0.922 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.081 0.919 27 H 0.121 0.879 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.028 0.972 32 H 0.036 0.964 33 H -0.033 1.033 34 H 0.072 0.928 35 H 0.109 0.891 36 H 0.030 0.970 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.128 0.872 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.879 12.625 7.014 16.452 hybrid contribution 1.084 -0.515 -1.109 1.634 sum -6.794 12.111 5.906 15.090 Atomic orbital electron populations 1.20866 0.91590 1.02971 1.01967 1.21896 0.96672 0.95192 0.99938 1.20864 0.99710 0.94223 1.02344 1.22615 0.99463 0.93771 1.03694 1.20649 0.99958 0.93112 0.97658 1.21857 0.98436 0.88784 0.96359 1.62077 1.01877 1.11101 1.51367 1.19345 0.94349 0.90409 0.87389 1.21459 1.04207 1.21251 1.09154 0.92277 1.25881 1.02063 0.96526 0.95091 1.70084 1.40436 1.29319 1.17601 0.85488 0.79093 0.78066 0.78286 1.19329 1.20736 1.19405 1.21692 0.88327 0.96302 0.97668 1.22178 0.94467 0.99388 1.01526 1.22993 1.06194 0.99707 0.94259 1.23030 0.91884 1.02582 1.00871 0.91187 0.90623 0.92197 0.91308 0.90462 0.91914 0.87930 0.90242 0.91323 0.92604 0.97199 0.96440 1.03301 0.92783 0.89056 0.97011 0.89152 0.89940 0.89437 0.87192 0.87376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.28 8.53 71.24 0.61 -1.68 16 2 C -0.14 -3.13 6.05 -16.48 -0.10 -3.23 16 3 C -0.11 -2.07 9.97 71.24 0.71 -1.36 16 4 C -0.18 -4.87 9.11 25.66 0.23 -4.64 16 5 C -0.08 -2.39 5.41 29.85 0.16 -2.23 16 6 C 0.07 2.97 4.78 86.31 0.41 3.39 16 7 N -0.54 -24.17 4.45 -900.81 -4.00 -28.18 16 8 C 0.21 11.68 4.60 85.56 0.39 12.07 16 9 C -0.52 -30.61 8.52 25.60 0.22 -30.39 16 10 H 0.06 3.41 7.37 -2.91 -0.02 3.39 16 11 C 0.00 0.13 5.46 84.66 0.46 0.59 16 12 N -0.93 -57.51 13.29 21.45 0.28 -57.23 16 13 Si 0.97 45.41 29.54 68.60 2.03 47.43 16 14 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 15 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 16 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 17 C 0.09 3.25 5.11 86.30 0.44 3.69 16 18 C -0.16 -5.52 4.73 -10.79 -0.05 -5.57 16 19 C -0.19 -6.39 10.05 30.59 0.31 -6.08 16 20 C -0.15 -3.79 10.25 30.59 0.31 -3.47 16 21 H 0.07 1.31 7.85 -2.39 -0.02 1.29 16 22 H 0.07 1.16 7.94 -2.39 -0.02 1.14 16 23 H 0.06 1.25 7.66 -2.38 -0.02 1.23 16 24 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.08 1.11 8.05 -2.39 -0.02 1.09 16 26 H 0.06 1.11 8.06 -2.39 -0.02 1.09 16 27 H 0.10 2.86 8.04 -2.91 -0.02 2.84 16 28 H 0.08 2.23 4.00 -2.38 -0.01 2.22 16 29 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.06 2.51 6.96 -2.38 -0.02 2.49 16 31 H 0.01 0.40 8.12 -2.39 -0.02 0.38 16 32 H 0.02 1.03 6.87 -2.39 -0.02 1.02 16 33 H -0.05 -3.07 8.06 -2.39 -0.02 -3.09 16 34 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 35 H 0.09 2.84 6.04 -2.39 -0.01 2.83 16 36 H 0.01 0.45 7.84 -2.39 -0.02 0.44 16 37 H 0.09 3.56 8.14 -2.38 -0.02 3.54 16 38 H 0.08 2.78 8.03 -2.39 -0.02 2.76 16 39 H 0.09 2.87 8.14 -2.38 -0.02 2.85 16 40 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -65.25 329.20 3.38 -61.88 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 0.96 Total: 15.00 kcal Atomic # 6 Polarization: -43.01 SS G_CDS: 4.11 Total: -38.90 kcal Atomic # 7 Polarization: -81.69 SS G_CDS: -3.72 Total: -85.41 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -65.25 3.38 -61.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595335060.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.704 kcal (2) G-P(sol) polarization free energy of solvation -65.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds