Wall clock time and date at job start Sun Mar 29 2020 22:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50703 * 119.99954 * 2 1 4 4 C 1.31002 * 120.00296 * 180.02562 * 2 1 3 5 5 C 1.50704 * 119.99953 * 352.74272 * 4 2 1 6 6 C 1.53000 * 109.46981 * 232.42312 * 5 4 2 7 7 N 1.46898 * 109.47117 * 179.97438 * 6 5 4 8 8 C 1.46839 * 111.00083 * 45.78577 * 7 6 5 9 9 C 1.53037 * 109.52598 * 185.83848 * 8 7 6 10 10 C 1.53113 * 109.28041 * 300.82658 * 9 8 7 11 11 C 1.53100 * 109.15561 * 57.64888 * 10 9 8 12 12 H 1.08995 * 109.50527 * 62.29138 * 11 10 9 13 13 C 1.50701 * 109.48707 * 182.40077 * 11 10 9 14 14 H 1.08000 * 120.00058 * 119.81435 * 13 11 10 15 15 C 1.37878 * 120.00477 * 299.80867 * 13 11 10 16 16 N 1.31518 * 119.99440 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 120.00292 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47061 * 59.99963 * 17 15 13 19 19 H 1.48505 * 109.47047 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46948 * 299.99906 * 17 15 13 21 21 C 1.46845 * 110.99833 * 170.00290 * 7 6 5 22 22 H 1.09005 * 109.46578 * 174.41091 * 1 2 3 23 23 H 1.09003 * 109.46830 * 294.40785 * 1 2 3 24 24 H 1.08993 * 109.47024 * 54.41377 * 1 2 3 25 25 H 1.09004 * 109.47247 * 270.00080 * 3 2 1 26 26 H 1.09004 * 109.47057 * 30.00279 * 3 2 1 27 27 H 1.09001 * 109.47195 * 149.99880 * 3 2 1 28 28 H 1.07997 * 120.00054 * 172.74102 * 4 2 1 29 29 H 1.08996 * 109.47387 * 112.42325 * 5 4 2 30 30 H 1.09007 * 109.46642 * 352.41650 * 5 4 2 31 31 H 1.09004 * 109.47305 * 59.99720 * 6 5 4 32 32 H 1.08998 * 109.46985 * 299.99995 * 6 5 4 33 33 H 1.08997 * 109.46592 * 305.85624 * 8 7 6 34 34 H 1.09007 * 109.46147 * 65.82403 * 8 7 6 35 35 H 1.09004 * 109.50133 * 60.76370 * 9 8 7 36 36 H 1.08994 * 109.50655 * 180.84262 * 9 8 7 37 37 H 1.08998 * 109.52799 * 177.55879 * 10 9 8 38 38 H 1.09007 * 109.52524 * 297.68428 * 10 9 8 39 39 H 0.97006 * 119.99707 * 179.97438 * 16 15 13 40 40 H 1.08998 * 109.46129 * 294.17055 * 21 7 6 41 41 H 1.09000 * 109.46500 * 54.15502 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1621 -1.1345 -0.0005 5 6 1.4177 -2.4345 0.1638 6 6 2.0496 -3.2442 1.2977 7 7 1.3237 -4.5112 1.4583 8 6 1.0836 -5.1487 0.1575 9 6 0.2029 -6.3855 0.3488 10 6 0.9036 -7.3635 1.2959 11 6 1.1854 -6.6598 2.6261 12 1 0.2434 -6.3665 3.0894 13 6 1.9276 -7.5973 3.5433 14 1 2.9094 -7.3322 3.9070 15 6 1.3534 -8.7933 3.9184 16 7 0.1581 -9.1164 3.4752 17 14 2.2732 -9.9550 5.0559 18 1 2.5499 -9.2703 6.3442 19 1 1.4453 -11.1623 5.3054 20 1 3.5555 -10.3555 4.4229 21 6 2.0377 -5.4151 2.3690 22 1 -0.3633 -1.0229 -0.1001 23 1 -0.3633 0.4247 0.9359 24 1 -0.3633 0.5980 -0.8357 25 1 2.4422 1.6198 -1.0277 26 1 1.6714 2.0648 0.5139 27 1 3.2129 1.1748 0.5139 28 1 3.2356 -1.1381 -0.1187 29 1 1.4724 -3.0043 -0.7638 30 1 0.3743 -2.2280 0.4025 31 1 1.9950 -2.6745 2.2254 32 1 3.0929 -3.4506 1.0591 33 1 0.5811 -4.4440 -0.5051 34 1 2.0357 -5.4453 -0.2828 35 1 -0.7546 -6.0879 0.7762 36 1 0.0373 -6.8669 -0.6150 37 1 0.2608 -8.2265 1.4693 38 1 1.8426 -7.6923 0.8506 39 1 -0.2458 -9.9580 3.7388 40 1 2.9852 -5.7105 1.9184 41 1 2.2280 -4.9039 3.3128 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595613845.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:23 Heat of formation + Delta-G solvation = -0.836188 kcal Electronic energy + Delta-G solvation = -17068.249011 eV Core-core repulsion = 14561.561977 eV Total energy + Delta-G solvation = -2506.687034 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.51739 -36.81806 -33.98007 -32.05059 -30.36640 -29.51041 -27.89047 -25.84434 -24.96461 -23.06179 -21.71307 -20.29357 -18.57657 -17.86268 -16.33409 -15.39485 -15.23584 -14.65549 -14.22867 -14.04874 -13.85184 -13.56640 -13.14727 -12.51888 -12.48348 -12.43256 -12.32778 -11.99604 -11.57121 -11.53921 -11.22444 -11.00892 -10.90546 -10.63431 -10.55002 -10.42920 -10.01735 -9.77196 -9.41255 -9.03468 -8.68013 -8.57594 -8.25732 -7.57596 -5.93754 -3.99875 2.14424 3.34570 3.39062 3.41622 4.41786 4.57099 4.86147 4.93271 5.24788 5.34358 5.36008 5.38861 5.41426 5.56906 5.67828 5.72487 5.76144 5.80521 5.88619 5.92068 6.00934 6.13076 6.22242 6.30847 6.34619 6.48323 6.57063 6.70994 6.77671 6.80817 6.93465 7.02948 7.27095 7.45484 7.73911 7.79491 7.89861 8.13390 8.21918 8.52639 9.04038 9.64073 11.12216 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.047403 B = 0.004495 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.541099 B = 6227.490368 C = 6538.713504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.142 4.142 3 C -0.115 4.115 4 C -0.156 4.156 5 C -0.102 4.102 6 C 0.062 3.938 7 N -0.539 5.539 8 C 0.057 3.943 9 C -0.118 4.118 10 C -0.110 4.110 11 C 0.055 3.945 12 H 0.034 0.966 13 C -0.515 4.515 14 H 0.052 0.948 15 C 0.063 3.937 16 N -0.889 5.889 17 Si 0.890 3.110 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.278 1.278 21 C 0.068 3.932 22 H 0.075 0.925 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.105 0.895 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.024 0.976 33 H 0.063 0.937 34 H 0.020 0.980 35 H 0.060 0.940 36 H 0.045 0.955 37 H 0.090 0.910 38 H 0.029 0.971 39 H 0.260 0.740 40 H 0.018 0.982 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.624 14.795 -7.912 16.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.142 4.142 3 C -0.171 4.171 4 C -0.174 4.174 5 C -0.139 4.139 6 C -0.066 4.066 7 N -0.264 5.264 8 C -0.071 4.071 9 C -0.156 4.156 10 C -0.148 4.148 11 C 0.036 3.964 12 H 0.052 0.948 13 C -0.554 4.554 14 H 0.071 0.929 15 C -0.138 4.138 16 N -0.528 5.528 17 Si 0.719 3.281 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.204 1.204 21 C -0.059 4.059 22 H 0.093 0.907 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.123 0.877 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.043 0.957 33 H 0.082 0.918 34 H 0.039 0.961 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.108 0.892 38 H 0.047 0.953 39 H 0.070 0.930 40 H 0.036 0.964 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.033 14.747 -7.680 16.659 hybrid contribution 1.440 -0.843 0.237 1.685 sum 2.473 13.904 -7.443 15.964 Atomic orbital electron populations 1.21014 0.92475 1.03218 1.01649 1.21560 0.95887 0.94885 1.01914 1.20775 0.99584 0.95172 1.01615 1.22665 0.99403 0.93981 1.01384 1.21027 1.00356 0.93620 0.98902 1.21999 0.95022 0.91442 0.98121 1.62076 1.48237 1.04266 1.11802 1.22140 0.98130 0.96260 0.90569 1.21683 0.99263 0.95510 0.99125 1.21643 0.98831 0.99177 0.95190 1.18656 0.95344 0.89444 0.92964 0.94774 1.21127 1.02874 1.03065 1.28324 0.92940 1.24935 0.94884 0.97875 0.96150 1.69890 1.14858 1.23349 1.44658 0.86688 0.79728 0.80347 0.81386 1.20311 1.21323 1.20405 1.22302 0.95210 0.94386 0.93994 0.90662 0.91896 0.92031 0.92026 0.92011 0.92074 0.87697 0.91082 0.89768 0.91245 0.95737 0.91840 0.96133 0.92142 0.93656 0.89173 0.95256 0.93039 0.96401 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 9.79 36.01 0.35 -0.91 16 2 C -0.14 -1.52 6.05 -101.07 -0.61 -2.13 16 3 C -0.11 -1.00 10.03 36.01 0.36 -0.64 16 4 C -0.16 -1.82 9.09 -36.02 -0.33 -2.15 16 5 C -0.10 -1.35 4.56 -27.88 -0.13 -1.47 16 6 C 0.06 0.98 5.25 -3.82 -0.02 0.96 16 7 N -0.54 -10.30 4.80 -234.68 -1.13 -11.43 16 8 C 0.06 1.03 4.85 -3.84 -0.02 1.01 16 9 C -0.12 -2.36 6.09 -26.65 -0.16 -2.52 16 10 C -0.11 -2.67 5.02 -26.62 -0.13 -2.80 16 11 C 0.05 1.40 2.26 -91.70 -0.21 1.19 16 12 H 0.03 0.97 8.14 -51.93 -0.42 0.55 16 13 C -0.52 -14.37 8.56 -34.44 -0.29 -14.67 16 14 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 15 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 16 N -0.89 -25.65 11.36 55.43 0.63 -25.02 16 17 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C 0.07 1.50 4.65 -3.83 -0.02 1.48 16 22 H 0.07 0.79 5.24 -51.93 -0.27 0.52 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 27 H 0.06 0.51 8.06 -51.93 -0.42 0.10 16 28 H 0.11 1.17 8.05 -52.49 -0.42 0.74 16 29 H 0.07 0.93 6.21 -51.93 -0.32 0.61 16 30 H 0.08 1.12 5.28 -51.93 -0.27 0.85 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.02 0.39 8.08 -51.93 -0.42 -0.03 16 33 H 0.06 0.99 5.81 -51.93 -0.30 0.69 16 34 H 0.02 0.38 8.14 -51.92 -0.42 -0.05 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.09 2.42 6.16 -51.93 -0.32 2.10 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 1.27 8.12 -51.93 -0.42 0.85 16 LS Contribution 315.16 15.07 4.75 4.75 Total: -1.00 -28.40 315.16 -9.43 -37.84 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -7.36 Total: -1.61 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -1.30 Total: -20.99 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: -0.50 Total: -36.45 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.40 -9.43 -37.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595613845.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.002 kcal (2) G-P(sol) polarization free energy of solvation -28.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds