Wall clock time and date at job start Sun Mar 29 2020 22:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50703 * 119.99954 * 2 1 4 4 C 1.31002 * 120.00296 * 180.02562 * 2 1 3 5 5 C 1.50704 * 119.99953 * 352.74272 * 4 2 1 6 6 C 1.53000 * 109.46981 * 232.42312 * 5 4 2 7 7 N 1.46898 * 109.47117 * 179.97438 * 6 5 4 8 8 C 1.46839 * 111.00083 * 45.78577 * 7 6 5 9 9 C 1.53037 * 109.52598 * 185.83848 * 8 7 6 10 10 C 1.53113 * 109.28041 * 300.82658 * 9 8 7 11 11 C 1.53100 * 109.15561 * 57.64888 * 10 9 8 12 12 H 1.08995 * 109.50527 * 62.29138 * 11 10 9 13 13 C 1.50701 * 109.48707 * 182.40077 * 11 10 9 14 14 H 1.08000 * 120.00058 * 119.81435 * 13 11 10 15 15 C 1.37878 * 120.00477 * 299.80867 * 13 11 10 16 16 N 1.31518 * 119.99440 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 120.00292 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47061 * 59.99963 * 17 15 13 19 19 H 1.48505 * 109.47047 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46948 * 299.99906 * 17 15 13 21 21 C 1.46845 * 110.99833 * 170.00290 * 7 6 5 22 22 H 1.09005 * 109.46578 * 174.41091 * 1 2 3 23 23 H 1.09003 * 109.46830 * 294.40785 * 1 2 3 24 24 H 1.08993 * 109.47024 * 54.41377 * 1 2 3 25 25 H 1.09004 * 109.47247 * 270.00080 * 3 2 1 26 26 H 1.09004 * 109.47057 * 30.00279 * 3 2 1 27 27 H 1.09001 * 109.47195 * 149.99880 * 3 2 1 28 28 H 1.07997 * 120.00054 * 172.74102 * 4 2 1 29 29 H 1.08996 * 109.47387 * 112.42325 * 5 4 2 30 30 H 1.09007 * 109.46642 * 352.41650 * 5 4 2 31 31 H 1.09004 * 109.47305 * 59.99720 * 6 5 4 32 32 H 1.08998 * 109.46985 * 299.99995 * 6 5 4 33 33 H 1.08997 * 109.46592 * 305.85624 * 8 7 6 34 34 H 1.09007 * 109.46147 * 65.82403 * 8 7 6 35 35 H 1.09004 * 109.50133 * 60.76370 * 9 8 7 36 36 H 1.08994 * 109.50655 * 180.84262 * 9 8 7 37 37 H 1.08998 * 109.52799 * 177.55879 * 10 9 8 38 38 H 1.09007 * 109.52524 * 297.68428 * 10 9 8 39 39 H 0.97006 * 119.99707 * 179.97438 * 16 15 13 40 40 H 1.08998 * 109.46129 * 294.17055 * 21 7 6 41 41 H 1.09000 * 109.46500 * 54.15502 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1621 -1.1345 -0.0005 5 6 1.4177 -2.4345 0.1638 6 6 2.0496 -3.2442 1.2977 7 7 1.3237 -4.5112 1.4583 8 6 1.0836 -5.1487 0.1575 9 6 0.2029 -6.3855 0.3488 10 6 0.9036 -7.3635 1.2959 11 6 1.1854 -6.6598 2.6261 12 1 0.2434 -6.3665 3.0894 13 6 1.9276 -7.5973 3.5433 14 1 2.9094 -7.3322 3.9070 15 6 1.3534 -8.7933 3.9184 16 7 0.1581 -9.1164 3.4752 17 14 2.2732 -9.9550 5.0559 18 1 2.5499 -9.2703 6.3442 19 1 1.4453 -11.1623 5.3054 20 1 3.5555 -10.3555 4.4229 21 6 2.0377 -5.4151 2.3690 22 1 -0.3633 -1.0229 -0.1001 23 1 -0.3633 0.4247 0.9359 24 1 -0.3633 0.5980 -0.8357 25 1 2.4422 1.6198 -1.0277 26 1 1.6714 2.0648 0.5139 27 1 3.2129 1.1748 0.5139 28 1 3.2356 -1.1381 -0.1187 29 1 1.4724 -3.0043 -0.7638 30 1 0.3743 -2.2280 0.4025 31 1 1.9950 -2.6745 2.2254 32 1 3.0929 -3.4506 1.0591 33 1 0.5811 -4.4440 -0.5051 34 1 2.0357 -5.4453 -0.2828 35 1 -0.7546 -6.0879 0.7762 36 1 0.0373 -6.8669 -0.6150 37 1 0.2608 -8.2265 1.4693 38 1 1.8426 -7.6923 0.8506 39 1 -0.2458 -9.9580 3.7388 40 1 2.9852 -5.7105 1.9184 41 1 2.2280 -4.9039 3.3128 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595613845.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:22 Heat of formation + Delta-G solvation = -16.134467 kcal Electronic energy + Delta-G solvation = -17068.912394 eV Core-core repulsion = 14561.561977 eV Total energy + Delta-G solvation = -2507.350417 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.04053 -37.85680 -35.69994 -33.80169 -31.91978 -31.05016 -28.63935 -27.06765 -26.87097 -24.48091 -23.42992 -21.76901 -20.35170 -18.77296 -18.37379 -16.86783 -16.40998 -16.39074 -15.61298 -15.31632 -14.91442 -14.82938 -14.71058 -14.25498 -14.08416 -13.75085 -13.23973 -13.14308 -12.92104 -12.84161 -12.77646 -12.60271 -12.34719 -12.24769 -12.09583 -11.73439 -11.57840 -11.46925 -11.30966 -10.86453 -10.66027 -10.37270 -9.48113 -9.11261 -8.07765 -6.22346 1.29421 1.41497 1.43099 1.50759 2.43034 3.12836 3.18818 3.93145 4.12630 4.14437 4.19402 4.26487 4.32305 4.45285 4.51414 4.62234 4.68740 4.73722 4.75538 4.86358 4.89018 4.92743 4.97087 4.99123 5.05813 5.12610 5.17345 5.19221 5.20958 5.31331 5.40301 5.52397 5.63234 5.86547 5.96986 6.08495 6.13803 6.21714 6.38362 6.46429 6.89904 7.45362 8.96747 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.047403 B = 0.004495 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.541099 B = 6227.490368 C = 6538.713504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.135 4.135 3 C -0.116 4.116 4 C -0.175 4.175 5 C -0.092 4.092 6 C 0.064 3.936 7 N -0.549 5.549 8 C 0.061 3.939 9 C -0.112 4.112 10 C -0.104 4.104 11 C 0.052 3.948 12 H -0.003 1.003 13 C -0.540 4.540 14 H 0.050 0.950 15 C 0.014 3.986 16 N -0.915 5.915 17 Si 0.956 3.044 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.272 1.272 21 C 0.081 3.919 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.109 0.891 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.026 0.974 33 H 0.096 0.904 34 H 0.022 0.978 35 H 0.051 0.949 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.021 0.979 39 H 0.261 0.739 40 H 0.013 0.987 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.191 16.164 -8.749 18.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.136 4.136 3 C -0.173 4.173 4 C -0.194 4.194 5 C -0.129 4.129 6 C -0.063 4.063 7 N -0.274 5.274 8 C -0.067 4.067 9 C -0.150 4.150 10 C -0.142 4.142 11 C 0.033 3.967 12 H 0.015 0.985 13 C -0.578 4.578 14 H 0.069 0.931 15 C -0.185 4.185 16 N -0.554 5.554 17 Si 0.781 3.219 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.197 1.197 21 C -0.046 4.046 22 H 0.086 0.914 23 H 0.085 0.915 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.127 0.873 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.044 0.956 33 H 0.114 0.886 34 H 0.041 0.959 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.040 0.960 39 H 0.070 0.930 40 H 0.031 0.969 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.605 16.134 -8.525 18.318 hybrid contribution 1.221 -1.211 0.498 1.790 sum 2.826 14.923 -8.027 17.179 Atomic orbital electron populations 1.21067 0.92046 1.03099 1.02518 1.21870 0.96448 0.95451 0.99786 1.20825 0.99574 0.94326 1.02541 1.22581 0.99637 0.93536 1.03612 1.20898 1.00250 0.94043 0.97674 1.22044 0.94995 0.89939 0.99341 1.62006 1.48466 1.04838 1.12100 1.22159 0.98057 0.95961 0.90480 1.21608 0.98658 0.95639 0.99068 1.21456 0.98113 0.99050 0.95589 1.18584 0.93964 0.90951 0.93159 0.98508 1.21504 1.03105 1.04015 1.29202 0.93146 1.25735 0.95707 0.99442 0.97602 1.70035 1.16125 1.23734 1.45540 0.85656 0.78595 0.78210 0.79449 1.19649 1.20802 1.19681 1.21976 0.94358 0.93530 0.94774 0.91412 0.91465 0.90551 0.90876 0.91025 0.91893 0.87265 0.90832 0.89823 0.91430 0.95606 0.88587 0.95931 0.93041 0.91145 0.92344 0.96045 0.93019 0.96858 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 9.79 71.24 0.70 -1.58 16 2 C -0.14 -2.57 6.05 -16.49 -0.10 -2.67 16 3 C -0.12 -1.71 10.03 71.24 0.71 -0.99 16 4 C -0.18 -3.74 9.09 25.65 0.23 -3.50 16 5 C -0.09 -2.24 4.56 29.85 0.14 -2.10 16 6 C 0.06 1.95 5.25 86.30 0.45 2.40 16 7 N -0.55 -20.59 4.80 -896.38 -4.31 -24.90 16 8 C 0.06 2.10 4.85 86.33 0.42 2.51 16 9 C -0.11 -4.41 6.09 30.64 0.19 -4.22 16 10 C -0.10 -5.13 5.02 30.67 0.15 -4.98 16 11 C 0.05 2.76 2.26 -11.49 -0.03 2.73 16 12 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 13 C -0.54 -30.83 8.56 25.60 0.22 -30.61 16 14 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 15 C 0.01 0.79 5.30 84.65 0.45 1.24 16 16 N -0.92 -54.12 11.36 21.45 0.24 -53.87 16 17 Si 0.96 44.43 29.54 68.60 2.03 46.46 16 18 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 19 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 21 C 0.08 3.62 4.65 86.33 0.40 4.02 16 22 H 0.07 1.28 5.24 -2.38 -0.01 1.27 16 23 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 25 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 26 H 0.07 0.92 8.12 -2.38 -0.02 0.90 16 27 H 0.06 0.91 8.06 -2.39 -0.02 0.89 16 28 H 0.11 2.22 8.05 -2.91 -0.02 2.19 16 29 H 0.07 1.74 6.21 -2.39 -0.01 1.72 16 30 H 0.08 2.06 5.28 -2.38 -0.01 2.05 16 31 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 32 H 0.03 0.78 8.08 -2.39 -0.02 0.76 16 33 H 0.10 2.72 5.81 -2.39 -0.01 2.71 16 34 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.06 3.25 6.16 -2.39 -0.01 3.23 16 38 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.26 14.65 8.31 -92.70 -0.77 13.88 16 40 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.05 2.40 8.12 -2.39 -0.02 2.38 16 Total: -1.00 -61.62 315.16 2.87 -58.75 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 0.96 Total: 11.31 kcal Atomic # 6 Polarization: -41.68 SS G_CDS: 3.94 Total: -37.75 kcal Atomic # 7 Polarization: -74.71 SS G_CDS: -4.06 Total: -78.77 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -61.62 2.87 -58.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595613845.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.618 kcal (2) G-P(sol) polarization free energy of solvation -61.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds