Wall clock time and date at job start Sun Mar 29 2020 22:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 C 1.30998 * 119.99872 * 124.99896 * 3 2 1 5 5 C 1.50697 * 120.00194 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47240 * 125.00045 * 5 4 3 7 7 N 1.46902 * 109.47478 * 180.02562 * 6 5 4 8 8 C 1.46847 * 110.99673 * 66.04264 * 7 6 5 9 9 C 1.53038 * 109.51951 * 174.16406 * 8 7 6 10 10 C 1.53122 * 109.28178 * 59.18292 * 9 8 7 11 11 C 1.53126 * 109.15512 * 302.34385 * 10 9 8 12 12 H 1.08996 * 109.50539 * 297.71223 * 11 10 9 13 13 C 1.50703 * 109.49666 * 177.59257 * 11 10 9 14 14 H 1.07998 * 119.99863 * 239.99501 * 13 11 10 15 15 C 1.37876 * 120.00075 * 60.00420 * 13 11 10 16 16 N 1.31516 * 119.99896 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 119.99803 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47102 * 90.00444 * 17 15 13 19 19 H 1.48509 * 109.47003 * 210.00070 * 17 15 13 20 20 H 1.48501 * 109.47409 * 329.99766 * 17 15 13 21 21 C 1.46842 * 110.99725 * 301.83925 * 7 6 5 22 22 H 1.08998 * 109.47533 * 59.99628 * 1 2 3 23 23 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47153 * 299.99998 * 1 2 3 25 25 H 1.09002 * 109.47153 * 240.00002 * 2 1 3 26 26 H 1.09001 * 109.46832 * 120.00193 * 2 1 3 27 27 H 1.07995 * 119.99948 * 305.00103 * 3 2 1 28 28 H 1.08005 * 120.00182 * 0.02562 * 4 3 2 29 29 H 1.09000 * 109.47641 * 245.00134 * 5 4 3 30 30 H 1.09004 * 109.46780 * 5.00415 * 5 4 3 31 31 H 1.09004 * 109.47344 * 300.00514 * 6 5 4 32 32 H 1.09003 * 109.46902 * 59.99909 * 6 5 4 33 33 H 1.08995 * 109.46483 * 294.17675 * 8 7 6 34 34 H 1.09001 * 109.46224 * 54.15060 * 8 7 6 35 35 H 1.09002 * 109.50517 * 179.12309 * 9 8 7 36 36 H 1.09005 * 109.50536 * 299.20013 * 9 8 7 37 37 H 1.09001 * 109.52040 * 62.24747 * 10 9 8 38 38 H 1.08996 * 109.52182 * 182.37809 * 10 9 8 39 39 H 0.96997 * 119.99551 * 179.97438 * 16 15 13 40 40 H 1.09001 * 109.46258 * 305.85485 * 21 7 6 41 41 H 1.08996 * 109.46916 * 65.81813 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8641 1.8214 0.9293 5 6 3.3670 3.2420 0.9291 6 6 3.0719 3.8878 2.2844 7 7 3.5615 5.2728 2.2840 8 6 2.8064 6.0975 1.3321 9 6 3.2429 7.5585 1.4628 10 6 4.7440 7.6649 1.1801 11 6 5.5040 6.7594 2.1534 12 1 5.3337 7.0991 3.1750 13 6 6.9779 6.8128 1.8435 14 1 7.5051 5.9108 1.5699 15 6 7.6532 8.0130 1.9096 16 7 7.0110 9.1114 2.2424 17 14 9.4802 8.0789 1.5262 18 1 9.6728 8.3347 0.0761 19 1 10.1113 9.1714 2.3096 20 1 10.1091 6.7833 1.8882 21 6 5.0019 5.3216 2.0027 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3635 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.7066 2.1087 -0.7661 28 1 3.1903 1.1333 1.6953 29 1 4.4423 3.2469 0.7508 30 1 2.8655 3.8047 0.1416 31 1 1.9965 3.8829 2.4627 32 1 3.5732 3.3250 3.0718 33 1 2.9998 5.7501 0.3173 34 1 1.7408 6.0163 1.5468 35 1 2.6935 8.1681 0.7454 36 1 3.0364 7.9111 2.4734 37 1 4.9451 7.3493 0.1563 38 1 5.0675 8.6972 1.3134 39 1 7.4863 9.9556 2.2892 40 1 5.5310 4.6767 2.7043 41 1 5.1851 4.9778 0.9847 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595621405.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:17 Heat of formation + Delta-G solvation = -10.609147 kcal Electronic energy + Delta-G solvation = -17008.936883 eV Core-core repulsion = 14501.826062 eV Total energy + Delta-G solvation = -2507.110821 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.58237 -36.23958 -34.12981 -32.46338 -31.01768 -29.82638 -27.60027 -24.91547 -24.34404 -22.42637 -21.44653 -20.69833 -19.66879 -18.25939 -16.36884 -15.16943 -14.99557 -14.90732 -14.33543 -14.14799 -13.87397 -13.52040 -12.98922 -12.85142 -12.37640 -12.36871 -12.06192 -11.93723 -11.66359 -11.46408 -11.16435 -10.97398 -10.88543 -10.73661 -10.62548 -10.38178 -10.01675 -9.78854 -9.43030 -9.05301 -8.98189 -8.66714 -8.27214 -7.52178 -5.94494 -4.00617 2.25342 3.32451 3.39214 3.42332 4.42838 4.60393 4.75585 4.92118 5.13448 5.20219 5.35378 5.35624 5.37787 5.55150 5.68529 5.71990 5.74356 5.82427 5.89067 5.95000 6.02612 6.04329 6.14592 6.33604 6.39066 6.47325 6.56718 6.69530 6.77173 6.80572 6.88524 7.02302 7.26109 7.44715 7.72167 7.78842 7.88455 8.12616 8.21363 8.51854 9.03617 9.63526 11.11469 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.036742 B = 0.004669 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.895007 B = 5995.093719 C = 6488.197701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.174 4.174 4 C -0.141 4.141 5 C -0.134 4.134 6 C 0.062 3.938 7 N -0.537 5.537 8 C 0.061 3.939 9 C -0.118 4.118 10 C -0.110 4.110 11 C 0.054 3.946 12 H 0.033 0.967 13 C -0.514 4.514 14 H 0.053 0.947 15 C 0.062 3.938 16 N -0.889 5.889 17 Si 0.890 3.110 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.275 1.275 21 C 0.065 3.935 22 H 0.053 0.947 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.025 0.975 34 H 0.055 0.945 35 H 0.045 0.955 36 H 0.060 0.940 37 H 0.029 0.971 38 H 0.090 0.910 39 H 0.259 0.741 40 H 0.057 0.943 41 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.648 -12.467 -3.373 16.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.131 4.131 3 C -0.192 4.192 4 C -0.160 4.160 5 C -0.173 4.173 6 C -0.067 4.067 7 N -0.260 5.260 8 C -0.067 4.067 9 C -0.156 4.156 10 C -0.148 4.148 11 C 0.035 3.965 12 H 0.051 0.949 13 C -0.553 4.553 14 H 0.071 0.929 15 C -0.139 4.139 16 N -0.527 5.527 17 Si 0.718 3.282 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.062 4.062 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.123 0.877 28 H 0.124 0.876 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.047 0.953 38 H 0.109 0.891 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -10.689 -12.056 -2.855 16.363 hybrid contribution 1.150 -0.264 -1.130 1.634 sum -9.539 -12.320 -3.985 16.083 Atomic orbital electron populations 1.21714 0.95412 1.01333 1.02035 1.20606 0.95957 0.94556 1.01966 1.22812 0.99682 0.97084 0.99648 1.22873 0.97703 0.97035 0.98367 1.21467 1.02038 0.93282 1.00482 1.22140 1.00086 0.89398 0.95059 1.62240 1.05438 1.07793 1.50496 1.22032 0.96426 0.94912 0.93295 1.21689 0.99355 0.93707 1.00877 1.21648 0.90627 1.04485 0.98068 1.18673 0.93558 0.88102 0.96178 0.94851 1.21160 0.93715 0.93897 1.46510 0.92885 1.24937 0.97967 0.95786 0.95185 1.69896 1.35609 0.98834 1.48406 0.86636 0.85711 0.77662 0.78209 1.20812 1.21260 1.19971 1.22326 0.84905 1.01270 0.97678 0.92740 0.92844 0.92596 0.91521 0.91805 0.87691 0.87559 0.90412 0.91689 0.91632 0.91140 0.95732 0.92607 0.93643 0.92139 0.95258 0.89148 0.93094 0.92406 0.95928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.89 37.16 0.37 -0.83 16 2 C -0.09 -0.85 6.38 -27.88 -0.18 -1.03 16 3 C -0.17 -1.92 9.12 -36.02 -0.33 -2.25 16 4 C -0.14 -1.70 9.12 -36.03 -0.33 -2.03 16 5 C -0.13 -1.90 4.96 -27.88 -0.14 -2.03 16 6 C 0.06 0.94 5.34 -3.82 -0.02 0.92 16 7 N -0.54 -10.10 4.86 -234.67 -1.14 -11.24 16 8 C 0.06 1.10 5.05 -3.83 -0.02 1.08 16 9 C -0.12 -2.37 6.09 -26.65 -0.16 -2.53 16 10 C -0.11 -2.65 5.02 -26.60 -0.13 -2.78 16 11 C 0.05 1.36 2.27 -91.69 -0.21 1.15 16 12 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 13 C -0.51 -14.23 8.56 -34.44 -0.29 -14.53 16 14 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 15 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 16 N -0.89 -25.58 11.35 55.43 0.63 -24.95 16 17 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 C 0.07 1.40 4.06 -3.84 -0.02 1.38 16 22 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.56 7.79 -51.93 -0.40 0.15 16 27 H 0.11 1.17 7.84 -52.49 -0.41 0.76 16 28 H 0.11 1.19 7.84 -52.48 -0.41 0.78 16 29 H 0.08 1.22 6.51 -51.93 -0.34 0.88 16 30 H 0.06 0.95 6.33 -51.93 -0.33 0.62 16 31 H 0.07 0.93 8.06 -51.93 -0.42 0.51 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.02 0.44 6.75 -51.93 -0.35 0.09 16 34 H 0.06 0.89 8.06 -51.93 -0.42 0.47 16 35 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 2.42 6.15 -51.93 -0.32 2.10 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.06 1.24 8.12 -51.93 -0.42 0.81 16 41 H 0.02 0.49 6.61 -51.93 -0.34 0.14 16 LS Contribution 317.64 15.07 4.79 4.79 Total: -1.00 -28.03 317.64 -9.81 -37.85 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -7.51 Total: -1.00 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: -1.55 Total: -21.83 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: -0.51 Total: -36.19 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.03 -9.81 -37.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595621405.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.238 kcal (2) G-P(sol) polarization free energy of solvation -28.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds