Wall clock time and date at job start Sun Mar 29 2020 22:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 C 1.30998 * 119.99872 * 124.99896 * 3 2 1 5 5 C 1.50697 * 120.00194 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47240 * 125.00045 * 5 4 3 7 7 N 1.46902 * 109.47478 * 180.02562 * 6 5 4 8 8 C 1.46847 * 110.99673 * 66.04264 * 7 6 5 9 9 C 1.53038 * 109.51951 * 174.16406 * 8 7 6 10 10 C 1.53122 * 109.28178 * 59.18292 * 9 8 7 11 11 C 1.53126 * 109.15512 * 302.34385 * 10 9 8 12 12 H 1.08996 * 109.50539 * 297.71223 * 11 10 9 13 13 C 1.50703 * 109.49666 * 177.59257 * 11 10 9 14 14 H 1.07998 * 119.99863 * 239.99501 * 13 11 10 15 15 C 1.37876 * 120.00075 * 60.00420 * 13 11 10 16 16 N 1.31516 * 119.99896 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 119.99803 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47102 * 90.00444 * 17 15 13 19 19 H 1.48509 * 109.47003 * 210.00070 * 17 15 13 20 20 H 1.48501 * 109.47409 * 329.99766 * 17 15 13 21 21 C 1.46842 * 110.99725 * 301.83925 * 7 6 5 22 22 H 1.08998 * 109.47533 * 59.99628 * 1 2 3 23 23 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47153 * 299.99998 * 1 2 3 25 25 H 1.09002 * 109.47153 * 240.00002 * 2 1 3 26 26 H 1.09001 * 109.46832 * 120.00193 * 2 1 3 27 27 H 1.07995 * 119.99948 * 305.00103 * 3 2 1 28 28 H 1.08005 * 120.00182 * 0.02562 * 4 3 2 29 29 H 1.09000 * 109.47641 * 245.00134 * 5 4 3 30 30 H 1.09004 * 109.46780 * 5.00415 * 5 4 3 31 31 H 1.09004 * 109.47344 * 300.00514 * 6 5 4 32 32 H 1.09003 * 109.46902 * 59.99909 * 6 5 4 33 33 H 1.08995 * 109.46483 * 294.17675 * 8 7 6 34 34 H 1.09001 * 109.46224 * 54.15060 * 8 7 6 35 35 H 1.09002 * 109.50517 * 179.12309 * 9 8 7 36 36 H 1.09005 * 109.50536 * 299.20013 * 9 8 7 37 37 H 1.09001 * 109.52040 * 62.24747 * 10 9 8 38 38 H 1.08996 * 109.52182 * 182.37809 * 10 9 8 39 39 H 0.96997 * 119.99551 * 179.97438 * 16 15 13 40 40 H 1.09001 * 109.46258 * 305.85485 * 21 7 6 41 41 H 1.08996 * 109.46916 * 65.81813 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8641 1.8214 0.9293 5 6 3.3670 3.2420 0.9291 6 6 3.0719 3.8878 2.2844 7 7 3.5615 5.2728 2.2840 8 6 2.8064 6.0975 1.3321 9 6 3.2429 7.5585 1.4628 10 6 4.7440 7.6649 1.1801 11 6 5.5040 6.7594 2.1534 12 1 5.3337 7.0991 3.1750 13 6 6.9779 6.8128 1.8435 14 1 7.5051 5.9108 1.5699 15 6 7.6532 8.0130 1.9096 16 7 7.0110 9.1114 2.2424 17 14 9.4802 8.0789 1.5262 18 1 9.6728 8.3347 0.0761 19 1 10.1113 9.1714 2.3096 20 1 10.1091 6.7833 1.8882 21 6 5.0019 5.3216 2.0027 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3635 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.7066 2.1087 -0.7661 28 1 3.1903 1.1333 1.6953 29 1 4.4423 3.2469 0.7508 30 1 2.8655 3.8047 0.1416 31 1 1.9965 3.8829 2.4627 32 1 3.5732 3.3250 3.0718 33 1 2.9998 5.7501 0.3173 34 1 1.7408 6.0163 1.5468 35 1 2.6935 8.1681 0.7454 36 1 3.0364 7.9111 2.4734 37 1 4.9451 7.3493 0.1563 38 1 5.0675 8.6972 1.3134 39 1 7.4863 9.9556 2.2892 40 1 5.5310 4.6767 2.7043 41 1 5.1851 4.9778 0.9847 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595621405.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:17 Heat of formation + Delta-G solvation = -25.446273 kcal Electronic energy + Delta-G solvation = -17009.580269 eV Core-core repulsion = 14501.826062 eV Total energy + Delta-G solvation = -2507.754207 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.11832 -37.28300 -35.71512 -34.07317 -32.26442 -31.67976 -28.73840 -26.93490 -25.63520 -23.50665 -23.11995 -22.16273 -20.58876 -19.92718 -18.42455 -16.86291 -16.24291 -15.99362 -15.91346 -15.52025 -15.03205 -14.75984 -14.61224 -14.40003 -13.78218 -13.74750 -13.39886 -13.11867 -12.85779 -12.84367 -12.73685 -12.61260 -12.47741 -11.94271 -11.84767 -11.72222 -11.66671 -11.52275 -11.35630 -10.84453 -10.65717 -10.37355 -9.98689 -8.97649 -8.07682 -6.22058 1.35622 1.41105 1.41561 1.52068 2.42991 3.18080 3.19175 3.83319 4.06707 4.19366 4.22413 4.25411 4.34614 4.45988 4.48060 4.53431 4.59255 4.65466 4.69553 4.77981 4.88528 4.91298 4.96174 5.08224 5.09646 5.11644 5.19669 5.20883 5.27747 5.38748 5.40864 5.53143 5.63781 5.80965 5.96238 5.99275 6.13864 6.22372 6.40370 6.47250 6.90899 7.45823 8.96987 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.036742 B = 0.004669 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.895007 B = 5995.093719 C = 6488.197701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.163 4.163 4 C -0.156 4.156 5 C -0.124 4.124 6 C 0.064 3.936 7 N -0.550 5.550 8 C 0.065 3.935 9 C -0.113 4.113 10 C -0.103 4.103 11 C 0.051 3.949 12 H -0.005 1.005 13 C -0.537 4.537 14 H 0.051 0.949 15 C 0.013 3.987 16 N -0.916 5.916 17 Si 0.955 3.045 18 H -0.276 1.276 19 H -0.283 1.283 20 H -0.268 1.268 21 C 0.082 3.918 22 H 0.055 0.945 23 H 0.066 0.934 24 H 0.051 0.949 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.104 0.896 28 H 0.115 0.885 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.029 0.971 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.049 0.951 37 H 0.021 0.979 38 H 0.057 0.943 39 H 0.260 0.740 40 H 0.053 0.947 41 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.611 -14.036 -4.092 18.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.132 4.132 3 C -0.181 4.181 4 C -0.174 4.174 5 C -0.163 4.163 6 C -0.064 4.064 7 N -0.273 5.273 8 C -0.062 4.062 9 C -0.150 4.150 10 C -0.142 4.142 11 C 0.032 3.968 12 H 0.013 0.987 13 C -0.575 4.575 14 H 0.069 0.931 15 C -0.186 4.186 16 N -0.555 5.555 17 Si 0.780 3.220 18 H -0.201 1.201 19 H -0.209 1.209 20 H -0.193 1.193 21 C -0.046 4.046 22 H 0.074 0.926 23 H 0.085 0.915 24 H 0.070 0.930 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.122 0.878 28 H 0.133 0.867 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.047 0.953 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.040 0.960 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -11.665 -13.643 -3.576 18.303 hybrid contribution 1.404 0.214 -0.908 1.686 sum -10.261 -13.429 -4.484 17.485 Atomic orbital electron populations 1.21705 0.94559 1.02207 1.01908 1.20657 0.96659 0.93263 1.02627 1.23012 0.98368 0.98077 0.98636 1.22766 0.98937 0.96039 0.99670 1.21300 1.00805 0.94704 0.99490 1.22196 1.00993 0.87267 0.95902 1.62163 1.03799 1.10333 1.50979 1.22026 0.97789 0.93001 0.93401 1.21610 0.96485 0.96061 1.00886 1.21455 0.93580 1.02014 0.97118 1.18610 0.93190 0.90872 0.94147 0.98719 1.21534 0.95266 0.94016 1.46720 0.93095 1.25735 1.02401 0.95429 0.94998 1.70041 1.37231 0.99251 1.49000 0.85611 0.80372 0.77834 0.78160 1.20129 1.20856 1.19268 1.21957 0.86953 0.98283 0.97373 0.92604 0.91540 0.92995 0.90672 0.91346 0.87807 0.86668 0.92410 0.92035 0.89754 0.90832 0.95318 0.89559 0.91265 0.93180 0.96000 0.92429 0.93070 0.92894 0.96125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.89 71.98 0.71 -1.29 16 2 C -0.09 -1.48 6.38 29.85 0.19 -1.29 16 3 C -0.16 -3.22 9.12 25.65 0.23 -2.99 16 4 C -0.16 -3.44 9.12 25.65 0.23 -3.20 16 5 C -0.12 -3.33 4.96 29.85 0.15 -3.19 16 6 C 0.06 1.84 5.34 86.30 0.46 2.30 16 7 N -0.55 -20.14 4.86 -896.36 -4.35 -24.49 16 8 C 0.07 2.23 5.05 86.33 0.44 2.67 16 9 C -0.11 -4.43 6.09 30.65 0.19 -4.25 16 10 C -0.10 -5.09 5.02 30.68 0.15 -4.94 16 11 C 0.05 2.65 2.27 -11.48 -0.03 2.62 16 12 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 13 C -0.54 -30.46 8.56 25.60 0.22 -30.24 16 14 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 15 C 0.01 0.74 5.30 84.65 0.45 1.19 16 16 N -0.92 -54.14 11.35 21.45 0.24 -53.90 16 17 Si 0.95 44.37 29.54 68.60 2.03 46.39 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 21 C 0.08 3.55 4.06 86.33 0.35 3.90 16 22 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 23 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.07 1.02 7.79 -2.39 -0.02 1.00 16 27 H 0.10 2.08 7.84 -2.91 -0.02 2.05 16 28 H 0.12 2.33 7.84 -2.91 -0.02 2.31 16 29 H 0.06 1.77 6.51 -2.39 -0.02 1.76 16 30 H 0.06 1.68 6.33 -2.38 -0.02 1.66 16 31 H 0.08 2.13 8.06 -2.38 -0.02 2.11 16 32 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.03 0.97 6.75 -2.39 -0.02 0.95 16 34 H 0.09 2.46 8.06 -2.39 -0.02 2.44 16 35 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 37 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.06 3.20 6.15 -2.39 -0.01 3.18 16 39 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 40 H 0.05 2.30 8.12 -2.39 -0.02 2.28 16 41 H 0.02 0.90 6.61 -2.39 -0.02 0.88 16 Total: -1.00 -60.99 317.64 2.62 -58.37 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.95 Total: 12.32 kcal Atomic # 6 Polarization: -42.44 SS G_CDS: 3.75 Total: -38.70 kcal Atomic # 7 Polarization: -74.28 SS G_CDS: -4.11 Total: -78.39 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -60.99 2.62 -58.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595621405.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.929 kcal (2) G-P(sol) polarization free energy of solvation -60.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds