Wall clock time and date at job start Sun Mar 29 2020 22:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 109.47220 * 2 1 4 4 C 1.31001 * 120.00551 * 124.99376 * 3 2 1 5 5 C 1.50694 * 120.00064 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.46990 * 125.00442 * 5 4 3 7 7 N 1.46902 * 109.47263 * 179.97438 * 6 5 4 8 8 C 1.46856 * 110.99619 * 66.04595 * 7 6 5 9 9 C 1.53039 * 109.51787 * 185.84053 * 8 7 6 10 10 C 1.53123 * 109.31189 * 300.79882 * 9 8 7 11 11 C 1.53203 * 109.11533 * 57.63615 * 10 9 8 12 12 H 1.09005 * 109.49195 * 62.32110 * 11 10 9 13 13 C 1.50704 * 109.49061 * 182.41949 * 11 10 9 14 14 H 1.08001 * 119.99416 * 119.82791 * 13 11 10 15 15 C 1.37876 * 120.00304 * 299.82825 * 13 11 10 16 16 N 1.31514 * 119.99780 * 180.02562 * 15 13 11 17 17 Si 1.86799 * 120.00083 * 359.97438 * 15 13 11 18 18 H 1.48502 * 109.46902 * 89.99939 * 17 15 13 19 19 H 1.48492 * 109.47161 * 210.00038 * 17 15 13 20 20 H 1.48504 * 109.47099 * 330.00638 * 17 15 13 21 21 C 1.46846 * 111.00121 * 190.25478 * 7 6 5 22 22 H 1.09000 * 109.47101 * 60.00508 * 1 2 3 23 23 H 1.09007 * 109.47351 * 180.02562 * 1 2 3 24 24 H 1.08991 * 109.47715 * 300.00639 * 1 2 3 25 25 H 1.08999 * 109.47444 * 239.99118 * 2 1 3 26 26 H 1.09000 * 109.46592 * 119.99367 * 2 1 3 27 27 H 1.08007 * 119.99885 * 304.99324 * 3 2 1 28 28 H 1.07998 * 119.99737 * 0.02562 * 4 3 2 29 29 H 1.09000 * 109.47343 * 5.00470 * 5 4 3 30 30 H 1.09001 * 109.47309 * 245.00145 * 5 4 3 31 31 H 1.09000 * 109.47054 * 59.99851 * 6 5 4 32 32 H 1.08999 * 109.47309 * 299.99721 * 6 5 4 33 33 H 1.09000 * 109.46462 * 65.82793 * 8 7 6 34 34 H 1.09002 * 109.45930 * 305.85061 * 8 7 6 35 35 H 1.09002 * 109.50563 * 60.76214 * 9 8 7 36 36 H 1.09003 * 109.50107 * 180.84195 * 9 8 7 37 37 H 1.08994 * 109.52349 * 177.58253 * 10 9 8 38 38 H 1.08997 * 109.52263 * 297.77214 * 10 9 8 39 39 H 0.96997 * 120.00136 * 180.02562 * 16 15 13 40 40 H 1.09004 * 109.46012 * 294.17710 * 21 7 6 41 41 H 1.08997 * 109.46257 * 54.15030 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8641 1.8216 0.9293 5 6 3.3668 3.2422 0.9289 6 6 3.0716 3.8880 2.2841 7 7 3.5622 5.2727 2.2840 8 6 2.8079 6.0981 1.3319 9 6 3.4375 7.4906 1.2517 10 6 3.4189 8.1356 2.6403 11 6 4.1694 7.2316 3.6235 12 1 5.2105 7.1420 3.3131 13 6 4.1053 7.8292 5.0055 14 1 3.6463 7.2766 5.8119 15 6 4.6326 9.0813 5.2403 16 7 4.5771 9.6025 6.4465 17 14 5.4271 10.0368 3.8456 18 1 4.4006 10.8687 3.1678 19 1 6.4938 10.9140 4.3912 20 1 6.0184 9.0872 2.8689 21 6 3.5188 5.8465 3.6350 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8898 25 1 1.8933 -0.5140 -0.8899 26 1 1.8932 -0.5137 0.8901 27 1 1.7066 2.1087 -0.7663 28 1 3.1901 1.1336 1.6953 29 1 2.8654 3.8048 0.1414 30 1 4.4421 3.2470 0.7507 31 1 3.5730 3.3254 3.0716 32 1 1.9963 3.8832 2.4624 33 1 1.7742 6.1856 1.6665 34 1 2.8326 5.6310 0.3473 35 1 4.4670 7.4051 0.9039 36 1 2.8686 8.1077 0.5562 37 1 3.9052 9.1100 2.5959 38 1 2.3876 8.2569 2.9718 39 1 4.9477 10.4836 6.6116 40 1 2.4817 5.9352 3.9587 41 1 4.0597 5.1969 4.3230 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595621406.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:19 Heat of formation + Delta-G solvation = -3.867074 kcal Electronic energy + Delta-G solvation = -16908.219079 eV Core-core repulsion = 14401.400616 eV Total energy + Delta-G solvation = -2506.818463 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.60478 -36.44217 -34.27348 -32.51160 -31.44256 -30.26316 -28.07961 -24.92982 -24.34782 -22.46420 -21.70288 -20.45291 -19.65774 -18.82856 -16.68996 -15.69977 -15.16490 -15.00486 -14.43862 -14.20579 -13.74697 -13.65100 -13.21760 -13.01337 -12.87505 -12.45764 -12.28798 -12.08838 -11.89778 -11.71057 -11.22008 -11.07481 -11.02453 -10.90362 -10.62689 -10.41495 -10.02959 -9.91192 -9.65184 -9.13760 -8.96465 -8.88466 -8.48567 -7.77908 -6.04272 -4.03175 2.16189 3.30828 3.41903 3.45792 4.33553 4.45312 4.70556 4.86310 5.05264 5.13302 5.26200 5.27703 5.35916 5.41559 5.54413 5.60142 5.63395 5.68240 5.75071 5.84131 5.88239 5.97267 6.04260 6.08866 6.21181 6.23435 6.32379 6.36823 6.52263 6.61660 6.65441 6.79461 6.85140 6.87780 7.23708 7.45539 7.66338 7.69053 7.90631 8.55374 8.98995 9.58764 11.09074 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.051387 B = 0.004398 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.758031 B = 6365.457115 C = 6604.614881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.170 4.170 4 C -0.147 4.147 5 C -0.089 4.089 6 C 0.061 3.939 7 N -0.543 5.543 8 C 0.061 3.939 9 C -0.120 4.120 10 C -0.122 4.122 11 C 0.020 3.980 12 H 0.035 0.965 13 C -0.514 4.514 14 H 0.072 0.928 15 C 0.070 3.930 16 N -0.903 5.903 17 Si 0.888 3.112 18 H -0.280 1.280 19 H -0.299 1.299 20 H -0.263 1.263 21 C 0.077 3.923 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.027 0.973 33 H 0.026 0.974 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.046 0.954 38 H 0.055 0.945 39 H 0.263 0.737 40 H 0.025 0.975 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.274 -14.458 -13.601 20.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.132 4.132 3 C -0.188 4.188 4 C -0.165 4.165 5 C -0.127 4.127 6 C -0.067 4.067 7 N -0.268 5.268 8 C -0.067 4.067 9 C -0.158 4.158 10 C -0.160 4.160 11 C 0.001 3.999 12 H 0.053 0.947 13 C -0.552 4.552 14 H 0.090 0.910 15 C -0.132 4.132 16 N -0.542 5.542 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.226 1.226 20 H -0.188 1.188 21 C -0.050 4.050 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.124 0.876 28 H 0.125 0.875 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.046 0.954 33 H 0.044 0.956 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.043 0.957 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.744 -14.310 -13.624 20.320 hybrid contribution -0.488 0.727 -0.355 0.944 sum -5.232 -13.583 -13.979 20.181 Atomic orbital electron populations 1.21716 0.95353 1.01421 1.02072 1.20614 0.96017 0.94513 1.02024 1.22830 0.99176 0.97162 0.99653 1.22911 0.97930 0.97206 0.98496 1.20743 1.01927 0.92118 0.97899 1.21982 0.97599 0.90115 0.97031 1.62008 1.54509 1.00997 1.09254 1.22031 0.94776 0.94104 0.95793 1.21660 1.00765 0.94837 0.98524 1.22035 1.01141 0.98870 0.93941 1.19176 0.95455 0.90246 0.95055 0.94665 1.21019 1.38581 1.02017 0.93586 0.90994 1.24988 0.95348 0.97420 0.95400 1.69902 1.46364 1.17248 1.20661 0.86816 0.78805 0.79927 0.82554 1.20745 1.22648 1.18785 1.22077 0.98789 0.97387 0.86707 0.92717 0.92779 0.92575 0.91464 0.91749 0.87605 0.87487 0.91714 0.90238 0.90970 0.95427 0.95555 0.91752 0.91852 0.92904 0.93574 0.92621 0.92718 0.95658 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.89 37.16 0.37 -0.76 16 2 C -0.09 -0.78 6.38 -27.89 -0.18 -0.96 16 3 C -0.17 -1.67 9.12 -36.03 -0.33 -1.99 16 4 C -0.15 -1.57 9.12 -36.03 -0.33 -1.90 16 5 C -0.09 -1.09 5.59 -27.89 -0.16 -1.24 16 6 C 0.06 0.88 4.94 -3.82 -0.02 0.86 16 7 N -0.54 -9.56 4.66 -234.66 -1.09 -10.66 16 8 C 0.06 1.00 5.29 -3.83 -0.02 0.98 16 9 C -0.12 -2.16 6.09 -26.65 -0.16 -2.32 16 10 C -0.12 -2.69 4.74 -26.56 -0.13 -2.82 16 11 C 0.02 0.48 1.85 -91.65 -0.17 0.31 16 12 H 0.04 0.89 7.19 -51.93 -0.37 0.52 16 13 C -0.51 -14.57 9.14 -34.44 -0.31 -14.89 16 14 H 0.07 2.19 7.99 -52.49 -0.42 1.78 16 15 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 16 N -0.90 -27.96 13.96 55.43 0.77 -27.18 16 17 Si 0.89 22.38 24.36 -169.99 -4.14 18.24 16 18 H -0.28 -6.88 6.89 56.52 0.39 -6.49 16 19 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 20 H -0.26 -6.40 6.53 56.52 0.37 -6.03 16 21 C 0.08 1.60 4.68 -3.84 -0.02 1.58 16 22 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.52 7.79 -51.93 -0.40 0.11 16 27 H 0.11 1.02 7.84 -52.48 -0.41 0.60 16 28 H 0.11 1.07 7.84 -52.49 -0.41 0.66 16 29 H 0.06 0.78 6.09 -51.93 -0.32 0.46 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.07 1.02 7.98 -51.93 -0.41 0.61 16 32 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16 33 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.92 6.22 -51.93 -0.32 0.59 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.05 1.07 3.37 -51.93 -0.18 0.90 16 38 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 40 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 1.37 8.01 -51.93 -0.42 0.96 16 LS Contribution 313.99 15.07 4.73 4.73 Total: -1.00 -29.80 313.99 -8.77 -38.57 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -7.49 Total: -2.50 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -1.55 Total: -21.21 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: -0.32 Total: -37.84 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.14 Total: 18.24 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.80 -8.77 -38.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595621406.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.707 kcal (2) G-P(sol) polarization free energy of solvation -29.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds