Wall clock time and date at job start Sun Mar 29 2020 22:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 109.47220 * 2 1 4 4 C 1.31001 * 120.00551 * 124.99376 * 3 2 1 5 5 C 1.50694 * 120.00064 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.46990 * 125.00442 * 5 4 3 7 7 N 1.46902 * 109.47263 * 179.97438 * 6 5 4 8 8 C 1.46856 * 110.99619 * 66.04595 * 7 6 5 9 9 C 1.53039 * 109.51787 * 185.84053 * 8 7 6 10 10 C 1.53123 * 109.31189 * 300.79882 * 9 8 7 11 11 C 1.53203 * 109.11533 * 57.63615 * 10 9 8 12 12 H 1.09005 * 109.49195 * 62.32110 * 11 10 9 13 13 C 1.50704 * 109.49061 * 182.41949 * 11 10 9 14 14 H 1.08001 * 119.99416 * 119.82791 * 13 11 10 15 15 C 1.37876 * 120.00304 * 299.82825 * 13 11 10 16 16 N 1.31514 * 119.99780 * 180.02562 * 15 13 11 17 17 Si 1.86799 * 120.00083 * 359.97438 * 15 13 11 18 18 H 1.48502 * 109.46902 * 89.99939 * 17 15 13 19 19 H 1.48492 * 109.47161 * 210.00038 * 17 15 13 20 20 H 1.48504 * 109.47099 * 330.00638 * 17 15 13 21 21 C 1.46846 * 111.00121 * 190.25478 * 7 6 5 22 22 H 1.09000 * 109.47101 * 60.00508 * 1 2 3 23 23 H 1.09007 * 109.47351 * 180.02562 * 1 2 3 24 24 H 1.08991 * 109.47715 * 300.00639 * 1 2 3 25 25 H 1.08999 * 109.47444 * 239.99118 * 2 1 3 26 26 H 1.09000 * 109.46592 * 119.99367 * 2 1 3 27 27 H 1.08007 * 119.99885 * 304.99324 * 3 2 1 28 28 H 1.07998 * 119.99737 * 0.02562 * 4 3 2 29 29 H 1.09000 * 109.47343 * 5.00470 * 5 4 3 30 30 H 1.09001 * 109.47309 * 245.00145 * 5 4 3 31 31 H 1.09000 * 109.47054 * 59.99851 * 6 5 4 32 32 H 1.08999 * 109.47309 * 299.99721 * 6 5 4 33 33 H 1.09000 * 109.46462 * 65.82793 * 8 7 6 34 34 H 1.09002 * 109.45930 * 305.85061 * 8 7 6 35 35 H 1.09002 * 109.50563 * 60.76214 * 9 8 7 36 36 H 1.09003 * 109.50107 * 180.84195 * 9 8 7 37 37 H 1.08994 * 109.52349 * 177.58253 * 10 9 8 38 38 H 1.08997 * 109.52263 * 297.77214 * 10 9 8 39 39 H 0.96997 * 120.00136 * 180.02562 * 16 15 13 40 40 H 1.09004 * 109.46012 * 294.17710 * 21 7 6 41 41 H 1.08997 * 109.46257 * 54.15030 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8641 1.8216 0.9293 5 6 3.3668 3.2422 0.9289 6 6 3.0716 3.8880 2.2841 7 7 3.5622 5.2727 2.2840 8 6 2.8079 6.0981 1.3319 9 6 3.4375 7.4906 1.2517 10 6 3.4189 8.1356 2.6403 11 6 4.1694 7.2316 3.6235 12 1 5.2105 7.1420 3.3131 13 6 4.1053 7.8292 5.0055 14 1 3.6463 7.2766 5.8119 15 6 4.6326 9.0813 5.2403 16 7 4.5771 9.6025 6.4465 17 14 5.4271 10.0368 3.8456 18 1 4.4006 10.8687 3.1678 19 1 6.4938 10.9140 4.3912 20 1 6.0184 9.0872 2.8689 21 6 3.5188 5.8465 3.6350 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8898 25 1 1.8933 -0.5140 -0.8899 26 1 1.8932 -0.5137 0.8901 27 1 1.7066 2.1087 -0.7663 28 1 3.1901 1.1336 1.6953 29 1 2.8654 3.8048 0.1414 30 1 4.4421 3.2470 0.7507 31 1 3.5730 3.3254 3.0716 32 1 1.9963 3.8832 2.4624 33 1 1.7742 6.1856 1.6665 34 1 2.8326 5.6310 0.3473 35 1 4.4670 7.4051 0.9039 36 1 2.8686 8.1077 0.5562 37 1 3.9052 9.1100 2.5959 38 1 2.3876 8.2569 2.9718 39 1 4.9477 10.4836 6.6116 40 1 2.4817 5.9352 3.9587 41 1 4.0597 5.1969 4.3230 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595621406.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:19 Heat of formation + Delta-G solvation = -21.650782 kcal Electronic energy + Delta-G solvation = -16908.990238 eV Core-core repulsion = 14401.400616 eV Total energy + Delta-G solvation = -2507.589622 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.07578 -37.36975 -35.72687 -34.24677 -32.61714 -32.01190 -29.11690 -26.85728 -25.55667 -23.57677 -23.15853 -21.73293 -20.52636 -20.42686 -18.82555 -17.25233 -16.29642 -16.16565 -15.81539 -15.42954 -15.20256 -14.93252 -14.79344 -14.44961 -14.09613 -13.94650 -13.57429 -13.15839 -12.97321 -12.86558 -12.72015 -12.61073 -12.28350 -11.98983 -11.84425 -11.79185 -11.64717 -11.54279 -11.41577 -11.01355 -10.75630 -10.61187 -9.82084 -9.19311 -8.30980 -6.34687 1.29948 1.36459 1.37640 1.47988 2.32865 3.03328 3.04882 3.86781 4.01414 4.04440 4.18313 4.20410 4.28825 4.41306 4.46299 4.48805 4.53313 4.58807 4.65391 4.73678 4.79351 4.81580 4.88973 4.93457 5.05555 5.09180 5.12606 5.14355 5.21729 5.26363 5.26548 5.38902 5.44126 5.63503 5.72644 5.84499 6.00367 6.16420 6.29130 6.35880 6.72699 7.31117 8.86027 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.051387 B = 0.004398 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.758031 B = 6365.457115 C = 6604.614881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 C -0.161 4.161 4 C -0.162 4.162 5 C -0.078 4.078 6 C 0.062 3.938 7 N -0.548 5.548 8 C 0.060 3.940 9 C -0.115 4.115 10 C -0.123 4.123 11 C 0.020 3.980 12 H 0.026 0.974 13 C -0.521 4.521 14 H 0.031 0.969 15 C 0.012 3.988 16 N -0.951 5.951 17 Si 0.953 3.047 18 H -0.266 1.266 19 H -0.299 1.299 20 H -0.247 1.247 21 C 0.088 3.912 22 H 0.057 0.943 23 H 0.064 0.936 24 H 0.047 0.953 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.028 0.972 33 H 0.026 0.974 34 H 0.097 0.903 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.036 0.964 38 H 0.046 0.954 39 H 0.266 0.734 40 H 0.014 0.986 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.526 -15.320 -16.777 23.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.134 4.134 3 C -0.179 4.179 4 C -0.181 4.181 5 C -0.115 4.115 6 C -0.066 4.066 7 N -0.272 5.272 8 C -0.067 4.067 9 C -0.153 4.153 10 C -0.160 4.160 11 C 0.001 3.999 12 H 0.044 0.956 13 C -0.559 4.559 14 H 0.050 0.950 15 C -0.185 4.185 16 N -0.592 5.592 17 Si 0.780 3.220 18 H -0.192 1.192 19 H -0.227 1.227 20 H -0.171 1.171 21 C -0.040 4.040 22 H 0.076 0.924 23 H 0.083 0.917 24 H 0.066 0.934 25 H 0.096 0.904 26 H 0.083 0.917 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.046 0.954 33 H 0.044 0.956 34 H 0.115 0.885 35 H 0.083 0.917 36 H 0.101 0.899 37 H 0.054 0.946 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.032 0.968 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.009 -15.199 -16.820 23.216 hybrid contribution -0.470 0.901 0.702 1.235 sum -5.479 -14.297 -16.119 22.231 Atomic orbital electron populations 1.21713 0.94865 1.02130 1.01815 1.20666 0.96402 0.93660 1.02641 1.23026 0.97908 0.97976 0.98957 1.22836 0.99135 0.96580 0.99525 1.20613 1.01844 0.92868 0.96210 1.22052 0.97429 0.88347 0.98772 1.61979 1.55493 1.02468 1.07276 1.22125 0.94286 0.93435 0.96898 1.21643 1.01695 0.95786 0.96128 1.21936 0.99930 0.98109 0.96052 1.19085 0.95585 0.92327 0.92905 0.95627 1.21351 1.37609 1.01924 0.95059 0.95033 1.25866 0.96067 0.98587 0.97964 1.70050 1.48060 1.17974 1.23088 0.85769 0.78033 0.78673 0.79532 1.19220 1.22676 1.17102 1.21780 0.97520 0.95822 0.88881 0.92361 0.91673 0.93431 0.90354 0.91654 0.87169 0.87169 0.91079 0.90632 0.91198 0.95413 0.95603 0.88516 0.91689 0.89886 0.94610 0.93471 0.92536 0.96811 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.89 71.98 0.71 -1.21 16 2 C -0.10 -1.35 6.38 29.85 0.19 -1.16 16 3 C -0.16 -2.72 9.12 25.65 0.23 -2.49 16 4 C -0.16 -3.10 9.12 25.64 0.23 -2.87 16 5 C -0.08 -1.70 5.59 29.85 0.17 -1.53 16 6 C 0.06 1.68 4.94 86.30 0.43 2.11 16 7 N -0.55 -18.34 4.66 -896.34 -4.17 -22.51 16 8 C 0.06 1.79 5.29 86.32 0.46 2.25 16 9 C -0.11 -3.75 6.09 30.65 0.19 -3.56 16 10 C -0.12 -5.22 4.74 30.70 0.15 -5.07 16 11 C 0.02 0.97 1.85 -11.46 -0.02 0.95 16 12 H 0.03 1.28 7.19 -2.38 -0.02 1.26 16 13 C -0.52 -30.55 9.14 25.60 0.23 -30.31 16 14 H 0.03 2.03 7.99 -2.91 -0.02 2.01 16 15 C 0.01 0.71 5.45 84.65 0.46 1.17 16 16 N -0.95 -60.72 13.96 21.45 0.30 -60.42 16 17 Si 0.95 46.23 24.36 68.60 1.67 47.90 16 18 H -0.27 -12.23 6.89 99.48 0.69 -11.54 16 19 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 20 H -0.25 -11.25 6.53 99.48 0.65 -10.60 16 21 C 0.09 3.65 4.68 86.32 0.40 4.05 16 22 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 23 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 24 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.06 0.91 7.79 -2.39 -0.02 0.89 16 27 H 0.11 1.77 7.84 -2.91 -0.02 1.75 16 28 H 0.11 2.02 7.84 -2.91 -0.02 2.00 16 29 H 0.07 1.45 6.09 -2.39 -0.01 1.44 16 30 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.07 1.92 7.98 -2.39 -0.02 1.90 16 32 H 0.03 0.76 8.12 -2.39 -0.02 0.74 16 33 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.10 2.31 6.22 -2.39 -0.01 2.30 16 35 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.08 2.24 8.14 -2.39 -0.02 2.23 16 37 H 0.04 1.58 3.37 -2.39 -0.01 1.58 16 38 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 40 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 41 H 0.06 2.46 8.01 -2.39 -0.02 2.44 16 Total: -1.00 -65.30 313.99 2.51 -62.79 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 0.88 Total: 9.93 kcal Atomic # 6 Polarization: -41.51 SS G_CDS: 3.83 Total: -37.68 kcal Atomic # 7 Polarization: -79.06 SS G_CDS: -3.87 Total: -82.93 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.67 Total: 47.90 kcal Total: -65.30 2.51 -62.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595621406.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.144 kcal (2) G-P(sol) polarization free energy of solvation -65.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds